Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p40150 Brassica napus
A06p18160 Brassica napus
A06p18190 Brassica napus
A06p35480 Brassica napus
Aa31LG11G3910 Aethionema arabicum
Aa31LG4G18060 Aethionema arabicum
Actinidia18691 Actinidia chinensis
Actinidia34289 Actinidia chinensis
Ah.13g071060 Amaranthus hybridus
Ah.13g071070 Amaranthus hybridus
AL5G29410 Arabidopsis lyrata
AL5G29420 Arabidopsis lyrata
AL6G36260 Arabidopsis lyrata
AL6G36270 Arabidopsis lyrata
Aqoxy5G04393 Aquilegia oxysepala
AT3G49570 Arabidopsis thaliana
AT3G49580 Arabidopsis thaliana
AT5G24655 Arabidopsis thaliana
AT5G24660 Arabidopsis thaliana
ATR0579G061 Amborella trichopoda
Atru.chr12.2499 Acer truncatum
Atru.chr12.2523 Acer truncatum
AUR62005945 Chenopodium quinoa
AUR62005946 Chenopodium quinoa
AUR62028119 Chenopodium quinoa
BcaB01g00694 Brassica carinata
BcaB01g00695 Brassica carinata
BcaB01g00696 Brassica carinata
BcaC03g17951 Brassica carinata
BcaC07g39418 Brassica carinata
BcaC07g39419 Brassica carinata
BcaC07g39421 Brassica carinata
BcaC09g49963 Brassica carinata
BcaNung02004 Brassica carinata
BolC2t12066H Brassica oleracea
BolC7t44833H Brassica oleracea
BolC8t50073H Brassica oleracea
BolC8t50074H Brassica oleracea
BraA02t08981Z Brassica rapa
BraA06t24903Z Brassica rapa
BraA06t26471Z Brassica rapa
C02p60110 Brassica napus
C07p43060 Brassica napus
C08p24550 Brassica napus
CAN.G303.61 Capsicum annuum
CAN.G303.62 Capsicum annuum
CAN.G65.142 Capsicum annuum
CANSAT21G0934 Cannabis sativa
CANSAT21G1431 Cannabis sativa
CARHR158580 Cardamine hirsuta
CARHR158590 Cardamine hirsuta
CARHR188800 Cardamine hirsuta
Carub.0005s1590 Capsella rubella
Carub.0005s1591 Capsella rubella
Carub.0006s2251 Capsella rubella
Carub.0006s2252 Capsella rubella
Ca_16840_v3 Cicer arietinum L.
Cc02_g00580 Coffea canephora
CDE04G0378 Ceratophyllum demersum
CDE11G0526 Ceratophyllum demersum
Ciclev10022951m.g Citrus clementina
CiPaw.06G038100 Carya illinoinensis
ClCG01G000030 Citrullus lanatus
COL.COLO4_14401 Corchorus olitorius
COL.COLO4_14402 Corchorus olitorius
Cpa.g.sc3.189 Carica papaya
CsaV3_5G000160 Cucumis sativus L.
CSS0002942 Camellia sinensis var. sinensis
CSS0005275 Camellia sinensis var. sinensis
DCAR_010556 Daucus carota
Dinv17275 Davidia involucrata
Dinv29190 Davidia involucrata
Duzib068G1330 Durio zibethinus
Duzib084G1005 Durio zibethinus
Duzib205G0505 Durio zibethinus
ECA232G1694 Erigeron canadensis
ECA233G1855 Erigeron canadensis
EL10Ac3g05128 Beta vulgaris
EL10Ac3g05129 Beta vulgaris
Eucgr.K00481 Eucalyptus grandis
Eucgr.K00482 Eucalyptus grandis
Eucgr.K00529 Eucalyptus grandis
Eucgr.K00530 Eucalyptus grandis
FAN03G2343 Fragaria x ananassa
FAN10G2693 Fragaria x ananassa
FAN10G4285 Fragaria x ananassa
FvH4_7g33340 Fragaria vesca
Glyma.04G225500 Glycine max
Glyma.06G139300 Glycine max
Glyma.14G188300 Glycine max
Gohir.A08G106600 Gossypium hirsutum
Gohir.A08G106800 Gossypium hirsutum
Gohir.D08G117850 Gossypium hirsutum
Gohir.D08G117900 Gossypium hirsutum
Gorai.004G126400 Gossypium raimondii
Gorai.004G126500 Gossypium raimondii
HanXRQChr08g0225771 Helianthus annuus
HanXRQChr08g0225851 Helianthus annuus
HanXRQChr08g0225861 Helianthus annuus
HanXRQChr08g0225881 Helianthus annuus
HanXRQChr16g0499781 Helianthus annuus
Haze_00337 Corylus avellana
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla
HPP92_008910 Vanilla planifolia
Lalb_Chr04g0252571 Lupinus albus
Lalb_Chr08g0239391 Lupinus albus
Lalb_Chr10g0102971 Lupinus albus
Lalb_Chr11g0067571 Lupinus albus
Lj1g0021256 Lotus japonicus
LjContig00155g0019595 Lotus japonicus
Lsat_1_v5_gn_2_3421 Lactuca sativa
Lsat_1_v5_gn_8_4241 Lactuca sativa
Lsat_1_v5_gn_8_4301 Lactuca sativa
Manes.01G002300 Manihot esculenta
MBI04_g09823_MAGBIO Magnolia biondii
MBI04_g21753_MAGBIO Magnolia biondii
MBI12_g23072_MAGBIO Magnolia biondii
MBI12_g23073_MAGBIO Magnolia biondii
MBI12_g33141_MAGBIO Magnolia biondii
MD01G1231600 Malus domestica
MD07G1303600 Malus domestica
Medtr3g093400 Medicago truncatula
Migut.F00119 Erythranthe guttata
Migut.F00121 Erythranthe guttata
Migut.F00966 Erythranthe guttata
Migut.F00967 Erythranthe guttata
MSTRG.26951 Avicennia marina
Nitab4.5_0000115g0190 Nicotiana tabacum
Nitab4.5_0002691g0070 Nicotiana tabacum
Nitab4.5_0002691g0080 Nicotiana tabacum
Nitab4.5_0002867g0010 Nicotiana tabacum
Nitab4.5_0007121g0010 Nicotiana tabacum
Nn3g18090 Nelumbo nucifera
Oeu017357.1 Olea europaea
Oeu055427.1 Olea europaea
Oeu063749.1 Olea europaea
Os02g0129800 Oryza sativa ssp. japonica
Os10g0509401 Oryza sativa ssp. japonica
Os10g0509600 Oryza sativa ssp. japonica
Peaxi162Scf00007g00254 Petunia axillaris
Peaxi162Scf00542g00013 Petunia axillaris
Peaxi162Scf00685g10014 Petunia axillaris
Peaxi162Scf00815g00116 Petunia axillaris
Peaxi162Scf01650g00008 Petunia axillaris
PGR142G3642 Punica granatum
PGSC0003DMG400000545 Solanum tuberosum
PGSC0003DMG400000546 Solanum tuberosum
PGSC0003DMG400000547 Solanum tuberosum
PGSC0003DMG400027025 Solanum tuberosum
Phvul.008G187900 Phaseolus vulgaris
Phvul.009G040500 Phaseolus vulgaris
Potri.012G004500 Populus trichocarpa
Potri.015G000500 Populus trichocarpa
Prupe.2G322300 Prunus persica
Psat5g070520 Pisum sativum
Psat5g070560 Pisum sativum
PSO017G3293 Papaver somniferum
PSO541G0132 Papaver somniferum
PSO675G1709 Papaver somniferum
QL09p005975 Quercus lobata
QL11p009417 Quercus lobata
RcHm_v2.0_Chr1g0383321 Rosa chinensis
Sabra12G0000400 Salix brachista
Sabra15G0000300 Salix brachista
SalBow4G1643 Salvia bowleyana
SalBow4G2332 Salvia bowleyana
Sc14g0006700 Simmondsia chinensis
Sed0013785 Sechium edule
SEGI_09109 Sequoiadendron giganteum
SEGI_32370 Sequoiadendron giganteum
SEGI_32433 Sequoiadendron giganteum
SEGI_37007 Sequoiadendron giganteum
SGA_v2.0_scaffold351G49675 Striga asiatica
SGA_v2.0_scaffold44G16873 Striga asiatica
Solyc03g096760.1 Solanum lycopersicum
Solyc03g096770.1 Solanum lycopersicum
Solyc03g096780.1 Solanum lycopersicum
Solyc06g072990.1 Solanum lycopersicum
Sopen03g027490 Solanum pennellii
Sopen03g027500 Solanum pennellii
Sopen03g027520 Solanum pennellii
Sopen06g029340 Solanum pennellii
Sp2g22730 Schrenkiella parvula
Sp5g12530 Schrenkiella parvula
Sp5g12540 Schrenkiella parvula
SpUn0007_0020 Schrenkiella parvula
TAR374G1397 Trochodendron aralioides
TAR375G0964 Trochodendron aralioides
THA.LOC104798994 Tarenaya hassleriana
Thecc.03G212200 Theobroma cacao
Thecc.03G212300 Theobroma cacao
Thhalv10005368m.g Eutrema salsugineum
Thhalv10010815m.g Eutrema salsugineum
TPR.G35911 Trifolium pratense
TWI81G0192 Tripterygium wilfordii
TWI81G0266 Tripterygium wilfordii
unitig_60.g25635 Utricularia gibba
vmacro06476 Vaccinium macrocarpon
vmacro06477 Vaccinium macrocarpon
VMungo1309G1451 Vigna mungo
Zm00001eb043810 Zea mays
Zm00001eb220550 Zea mays
Zm00001eb231110 Zea mays

User provided reference genes

Program Settings