Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p41860 Brassica napus
A04p03060 Brassica napus
A07p23490 Brassica napus
A09p50410 Brassica napus
Aa31LG10G12380 Aethionema arabicum
Aa31LG1G23900 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3821 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3822 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2093 Anthoceros agrestis
Actinidia09347 Actinidia chinensis
Actinidia24527 Actinidia chinensis
Ah.04g151820 Amaranthus hybridus
Ah.13g076330 Amaranthus hybridus
AL4G40210 Arabidopsis lyrata
AL5G39130 Arabidopsis lyrata
Aqoxy2G00194 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.32WV4S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KV2TLG Arachis hypogaea
AT2G41880 Arabidopsis thaliana
AT3G57550 Arabidopsis thaliana
ATR0332G068 Amborella trichopoda
Atru.chr1.1055 Acer truncatum
AUR62024414 Chenopodium quinoa
AUR62026008 Chenopodium quinoa
BcaB02g07592 Brassica carinata
BcaB02g07594 Brassica carinata
BcaB02g08310 Brassica carinata
BcaC02g09948 Brassica carinata
BcaC07g40368 Brassica carinata
BcaC07g40388 Brassica carinata
BcaC08g44852 Brassica carinata
BolC4t25038H Brassica oleracea
BolC6t37610H Brassica oleracea
BolC6t37616H Brassica oleracea
BolC8t50910H Brassica oleracea
BraA03t13339Z Brassica rapa
BraA04t16029Z Brassica rapa
BraA07t30010Z Brassica rapa
BraA09t40493Z Brassica rapa
C04p34860 Brassica napus
C06p24610 Brassica napus
C08p33100 Brassica napus
CAN.G23.18 Capsicum annuum
CAN.G543.1 Capsicum annuum
CAN.G641.14 Capsicum annuum
CANSAT80G0219 Cannabis sativa
CARHR033340 Cardamine hirsuta
CARHR136970 Cardamine hirsuta
CARHR167780 Cardamine hirsuta
CARHR184420 Cardamine hirsuta
Carub.0004s2419 Capsella rubella
Carub.0005s2095 Capsella rubella
Carub.0005s2439 Capsella rubella
Ca_08473_v3 Cicer arietinum L.
Ca_22417_v3 Cicer arietinum L.
Cc06_g16920 Coffea canephora
CDE10G0037 Ceratophyllum demersum
CDE10G0230 Ceratophyllum demersum
Cfa016843 Carpinus fangiana
Cfa022053 Carpinus fangiana
Ciclev10005107m.g Citrus clementina
CiPaw.09G036300 Carya illinoinensis
CiPaw.10G031900 Carya illinoinensis
ClCG04G000230 Citrullus lanatus
COL.COLO4_28205 Corchorus olitorius
Cpa.g.sc92.27 Carica papaya
Cre08.g377350 Chlamydomonas reinhardtii
Cre09.g394102 Chlamydomonas reinhardtii
Cre12.g519950 Chlamydomonas reinhardtii
CsaV3_4G011640 Cucumis sativus L.
CSS0003950 Camellia sinensis var. sinensis
DCAR_013589 Daucus carota
DCAR_016985 Daucus carota
DCAR_016991 Daucus carota
Dinv01666 Davidia involucrata
Dinv18066 Davidia involucrata
Duzib093G1528 Durio zibethinus
Duzib128G1923 Durio zibethinus
ECA236G3208 Erigeron canadensis
ECA247G3367 Erigeron canadensis
EL10Ac3g07034 Beta vulgaris
Eucgr.A02380 Eucalyptus grandis
FAN02G0880 Fragaria x ananassa
FAN05G5049 Fragaria x ananassa
FAN09G3636 Fragaria x ananassa
FAN14G2172 Fragaria x ananassa
FvH4_6g23440 Fragaria vesca
Glyma.02G182400 Glycine max
Glyma.03G138200 Glycine max
Glyma.10G100800 Glycine max
Glyma.19G141200 Glycine max
Gohir.A02G111500 Gossypium hirsutum
Gohir.A09G123600 Gossypium hirsutum
Gohir.A11G311900 Gossypium hirsutum
Gohir.D03G067400 Gossypium hirsutum
Gohir.D09G120500 Gossypium hirsutum
Gohir.D11G328500 Gossypium hirsutum
Gorai.003G093200 Gossypium raimondii
Gorai.006G137900 Gossypium raimondii
Gorai.007G359800 Gossypium raimondii
GSVIVG01033311001 Vitis vinifera
HanXRQChr05g0132101 Helianthus annuus
HanXRQChr06g0172361 Helianthus annuus
HanXRQChr10g0300181 Helianthus annuus
Haze_19893 Corylus avellana
Haze_19894 Corylus avellana
Haze_26384 Corylus avellana
Hma1.2p1_0247F.1_g101850 Hydrangea macrophylla
Hma1.2p1_0465F.1_g158430 Hydrangea macrophylla
HPP92_014270 Vanilla planifolia
HPP92_024480 Vanilla planifolia
Hund19160 Selenicereus undatus
Hund24725 Selenicereus undatus
Lalb_Chr20g0110791 Lupinus albus
Lalb_Chr25g0287371 Lupinus albus
Lj1g0013486 Lotus japonicus
Lj2A380G69 Lonicera japonica
Lj5g0003249 Lotus japonicus
Lju124C36T15 Lonicera japonica
Lsat_1_v5_gn_8_79880 Lactuca sativa
Lsat_1_v5_gn_9_27260 Lactuca sativa
Lsat_1_v5_gn_9_27300 Lactuca sativa
Manes.08G049000 Manihot esculenta
Manes.09G025300 Manihot esculenta
Mapoly0030s0077 Marchantia polymorpha
MBI02_g20545_MAGBIO Magnolia biondii
MBI04_g36077_MAGBIO Magnolia biondii
MCO03G128 Micromonas commoda
MCO10G032 Micromonas commoda
MD12G1069000 Malus domestica
MD14G1069300 Malus domestica
Medtr0374s0010 Medicago truncatula
Medtr7g092020 Medicago truncatula
MELO3C023150.2 Cucumis melo
Migut.J01772 Erythranthe guttata
Migut.K00077 Erythranthe guttata
MSTRG.10824 Avicennia marina
MSTRG.19875 Avicennia marina
Nitab4.5_0002510g0010 Nicotiana tabacum
Nitab4.5_0012520g0010 Nicotiana tabacum
Nn2g15355 Nelumbo nucifera
Nn7g36223 Nelumbo nucifera
Oeu008130.1 Olea europaea
Oeu033152.2 Olea europaea
Os12g0515600 Oryza sativa ssp. japonica
Peaxi162Scf00493g00432 Petunia axillaris
PGR004G2219 Punica granatum
PGSC0003DMG400008176 Solanum tuberosum
PGSC0003DMG400009699 Solanum tuberosum
Phvul.001G135600 Phaseolus vulgaris
Phvul.007G253800 Phaseolus vulgaris
Potri.006G053400 Populus trichocarpa
Potri.016G054200 Populus trichocarpa
Pp3c10_16780 Physcomitrium patens
Pp3c12_17390 Physcomitrium patens
Pp3c3_19590 Physcomitrium patens
Pp3c4_12390 Physcomitrium patens
Pp3c4_22430 Physcomitrium patens
Pp3s46_30 Physcomitrium patens
PRCOL_00000840 Prasinoderma coloniale
PRCOL_00003707 Prasinoderma coloniale
Prupe.7G065100 Prunus persica
Psat3g079280 Pisum sativum
Psat6g127440 Pisum sativum
Psat6g206600 Pisum sativum
PSO339G3800 Papaver somniferum
PSO384G2746 Papaver somniferum
QL07p021104 Quercus lobata
RcHm_v2.0_Chr3g0481461 Rosa chinensis
Rhsim03G0018000 Rhododendron simsii
Sabra06G0037800 Salix brachista
Sabra16G0057200 Salix brachista
SalBow1G1977 Salvia bowleyana
SalBow1G7431 Salvia bowleyana
SalBow6G2365 Salvia bowleyana
Sc13g0001890 Simmondsia chinensis
Sed0010502 Sechium edule
Sed0022759 Sechium edule
SEGI_06255 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30432 Striga asiatica
SGA_v2.0_scaffold94G28465 Striga asiatica
SMO347G0305 Selaginella moellendorffii
Solyc03g063600.4 Solanum lycopersicum
Solyc10g079140.2 Solanum lycopersicum
Sopen03g016310 Solanum pennellii
Sopen10g029790 Solanum pennellii
Sp4g24150 Schrenkiella parvula
Sp5g05040 Schrenkiella parvula
TAR369G0537 Trochodendron aralioides
TAR623G1095 Trochodendron aralioides
TAR629G1066 Trochodendron aralioides
TAR633G2745 Trochodendron aralioides
THA.LOC104802208 Tarenaya hassleriana
THA.LOC104824454 Tarenaya hassleriana
Thecc.05G159400 Theobroma cacao
Thhalv10006029m.g Eutrema salsugineum
Thhalv10016777m.g Eutrema salsugineum
TPR.G21413 Trifolium pratense
TPR.G3695 Trifolium pratense
TWI53G1076 Tripterygium wilfordii
TWI74G1434 Tripterygium wilfordii
vmacro22365 Vaccinium macrocarpon
VMungo0720G0250 Vigna mungo
VMungo1383G0596 Vigna mungo
Zm00001eb410890 Zea mays

User provided reference genes

Program Settings