Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p03650 Brassica napus
A10p28510 Brassica napus
Aa31LG11G2500 Aethionema arabicum
Aa31LG3G18380 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4180 Anthoceros agrestis
Actinidia01419 Actinidia chinensis
Actinidia01420 Actinidia chinensis
Actinidia10431 Actinidia chinensis
Actinidia10432 Actinidia chinensis
Actinidia18962 Actinidia chinensis
Ah.01g003930 Amaranthus hybridus
Ah.02g114360 Amaranthus hybridus
Ah.11g046680 Amaranthus hybridus
Ah.11g047320 Amaranthus hybridus
AL6G18550 Arabidopsis lyrata
Aqoxy3G00608 Aquilegia oxysepala
Aqoxy3G03800 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.82AL0Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.94WPEC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BZP5X4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C31NHE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G7HP2Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M1P4SX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TX18T3 Arachis hypogaea
AT5G08160 Arabidopsis thaliana
ATR0691G304 Amborella trichopoda
Atru.chr9.680 Acer truncatum
AUR62026125 Chenopodium quinoa
AUR62028450 Chenopodium quinoa
AUR62028451 Chenopodium quinoa
AUR62032157 Chenopodium quinoa
AUR62036913 Chenopodium quinoa
AUR62043071 Chenopodium quinoa
BcaB01g05625 Brassica carinata
BcaB08g37278 Brassica carinata
BcaB08g37280 Brassica carinata
BcaC03g13208 Brassica carinata
BcaNung05090 Brassica carinata
BolC2t06304H Brassica oleracea
BolC3t12945H Brassica oleracea
BolC9t59626H Brassica oleracea
BraA02t04943Z Brassica rapa
BraA03t09713Z Brassica rapa
BraA10t44899Z Brassica rapa
C02p03430 Brassica napus
C03p04130 Brassica napus
C09p68790 Brassica napus
CAN.G587.68 Capsicum annuum
CAN.G648.13 Capsicum annuum
CAN.G982.26 Capsicum annuum
CANSAT80G1679 Cannabis sativa
CARHR205020 Cardamine hirsuta
Carub.0006s0706 Capsella rubella
Ca_21743_v3 Cicer arietinum L.
CBR_g39726 Chara braunii
Cc04_g07940 Coffea canephora
CDE01G0151 Ceratophyllum demersum
CDE02G0750 Ceratophyllum demersum
CDE02G3580 Ceratophyllum demersum
Cfa002184 Carpinus fangiana
Ciclev10021674m.g Citrus clementina
CiPaw.15G117900 Carya illinoinensis
ClCG04G011450 Citrullus lanatus
ClCG06G015300 Citrullus lanatus
COL.COLO4_07848 Corchorus olitorius
Cpa.g.sc2452.1 Carica papaya
Cre03.g148850 Chlamydomonas reinhardtii
Cre09.g396102 Chlamydomonas reinhardtii
CsaV3_1G003180 Cucumis sativus L.
CsaV3_1G006350 Cucumis sativus L.
CSS0003413 Camellia sinensis var. sinensis
CSS0011891 Camellia sinensis var. sinensis
CSS0015625 Camellia sinensis var. sinensis
CSS0042727 Camellia sinensis var. sinensis
DCAR_011591 Daucus carota
DCAR_015111 Daucus carota
Dinv36840 Davidia involucrata
Dinv38620 Davidia involucrata
Duzib084G1161 Durio zibethinus
Duzib205G1372 Durio zibethinus
ECA246G0336 Erigeron canadensis
ECA247G3233 Erigeron canadensis
EL10Ac5g11212 Beta vulgaris
Eucgr.B00658 Eucalyptus grandis
FAN08G3318 Fragaria x ananassa
FAN13G0388 Fragaria x ananassa
FAN18G1156 Fragaria x ananassa
FvH4_5g13060 Fragaria vesca
Glyma.05G016900 Glycine max
Glyma.17G083100 Glycine max
Gohir.A03G073200 Gossypium hirsutum
Gohir.A07G057700 Gossypium hirsutum
Gohir.A11G287105 Gossypium hirsutum
Gohir.A12G184800 Gossypium hirsutum
Gohir.D03G099700 Gossypium hirsutum
Gohir.D07G062500 Gossypium hirsutum
Gohir.D12G187800 Gossypium hirsutum
Gorai.001G066000 Gossypium raimondii
Gorai.003G104700 Gossypium raimondii
Gorai.008G201200 Gossypium raimondii
GSVIVG01008184001 Vitis vinifera
HanXRQChr02g0043221 Helianthus annuus
HanXRQChr04g0109551 Helianthus annuus
HanXRQChr08g0234391 Helianthus annuus
Haze_25318 Corylus avellana
Hma1.2p1_0595F.1_g186200 Hydrangea macrophylla
Hma1.2p1_0744F.1_g211690 Hydrangea macrophylla
HPP92_005302 Vanilla planifolia
HPP92_015515 Vanilla planifolia
HPP92_015516 Vanilla planifolia
HPP92_015559 Vanilla planifolia
HPP92_015560 Vanilla planifolia
HPP92_023904 Vanilla planifolia
Hund09974 Selenicereus undatus
Lalb_Chr12g0197431 Lupinus albus
Lalb_Chr13g0302621 Lupinus albus
Lalb_Chr23g0274071 Lupinus albus
Lj4g0005951 Lotus japonicus
Lj5A139T81 Lonicera japonica
Lsat_1_v5_gn_1_15541 Lactuca sativa
Lsat_1_v5_gn_5_24460 Lactuca sativa
Lsat_1_v5_gn_6_23060 Lactuca sativa
Lsat_1_v5_gn_8_28121 Lactuca sativa
Manes.01G024000 Manihot esculenta
Manes.05G115900 Manihot esculenta
Mapoly0217s0005 Marchantia polymorpha
MBI15_g03195_MAGBIO Magnolia biondii
MCO13G606 Micromonas commoda
MD06G1207400 Malus domestica
MD14G1217900 Malus domestica
Medtr4g112900 Medicago truncatula
MELO3C002061.2 Cucumis melo
MELO3C017263.2 Cucumis melo
Migut.I00403 Erythranthe guttata
MSTRG.4521 Avicennia marina
MSTRG.9563 Avicennia marina
Nitab4.5_0000208g0040 Nicotiana tabacum
Nitab4.5_0000646g0190 Nicotiana tabacum
Nitab4.5_0002805g0160 Nicotiana tabacum
Nitab4.5_0007617g0020 Nicotiana tabacum
Nn3g17607 Nelumbo nucifera
Nn4g23608 Nelumbo nucifera
Oeu001005.1 Olea europaea
Oeu008244.1 Olea europaea
Os09g0237600 Oryza sativa ssp. japonica
Os09g0372800 Oryza sativa ssp. japonica
Peaxi162Scf00013g00832 Petunia axillaris
Peaxi162Scf00017g03130 Petunia axillaris
Peaxi162Scf00119g00016 Petunia axillaris
PGR083G2102 Punica granatum
PGSC0003DMG400000652 Solanum tuberosum
PGSC0003DMG400004058 Solanum tuberosum
PGSC0003DMG400024513 Solanum tuberosum
Phvul.003G181000 Phaseolus vulgaris
Potri.012G057300 Populus trichocarpa
Potri.015G055200 Populus trichocarpa
Pp3c15_12440 Physcomitrium patens
PRCOL_00000155 Prasinoderma coloniale
Prupe.5G211800 Prunus persica
Psat4g046920 Pisum sativum
PSO017G1130 Papaver somniferum
PSO063G4536 Papaver somniferum
PSO478G5178 Papaver somniferum
PSO782G0690 Papaver somniferum
QL04p088038 Quercus lobata
QL10p021698 Quercus lobata
RcHm_v2.0_Chr7g0184071 Rosa chinensis
Rhsim08G0140900 Rhododendron simsii
Rhsim12G0146600 Rhododendron simsii
Sabra15G0080000 Salix brachista
SalBow5G5032 Salvia bowleyana
Sc12g0006950 Simmondsia chinensis
Sed0004218 Sechium edule
Sed0006970 Sechium edule
Sed0019840 Sechium edule
Sed0026229 Sechium edule
SEGI_10664 Sequoiadendron giganteum
SEGI_21241 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08801 Striga asiatica
SGA_v2.0_scaffold25G10976 Striga asiatica
SMO259G0005 Selaginella moellendorffii
Solyc03g114590.3 Solanum lycopersicum
Solyc06g069330.3 Solanum lycopersicum
Solyc12g038920.2 Solanum lycopersicum
Sopen03g033660 Solanum pennellii
Sopen06g026590 Solanum pennellii
Sopen12g019100 Solanum pennellii
Sp6g34790 Schrenkiella parvula
TAR374G1210 Trochodendron aralioides
TAR622G0159 Trochodendron aralioides
TAR629G2627 Trochodendron aralioides
THA.LOC104800957 Tarenaya hassleriana
THA.LOC104819390 Tarenaya hassleriana
Thecc.03G112700 Theobroma cacao
Thhalv10013995m.g Eutrema salsugineum
TPR.G2054 Trifolium pratense
TWI15G0752 Tripterygium wilfordii
TWI60G0446 Tripterygium wilfordii
unitig_0.g1352 Utricularia gibba
vmacro16467 Vaccinium macrocarpon
vmacro17656 Vaccinium macrocarpon
vmacro17657 Vaccinium macrocarpon
VMungo1215G0930 Vigna mungo
Zm00001eb095510 Zea mays
Zm00001eb311400 Zea mays

User provided reference genes

Program Settings