Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p37880 Brassica napus
A03p34930 Brassica napus
A05p41260 Brassica napus
A06p38580 Brassica napus
Aa31LG5G17450 Aethionema arabicum
Aa31sc105G60 Aethionema arabicum
Actinidia14289 Actinidia chinensis
Actinidia19582 Actinidia chinensis
Actinidia40286 Actinidia chinensis
AL3G18000 Arabidopsis lyrata
AL8G22610 Arabidopsis lyrata
Aqoxy3G03400 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8XU14N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IWFQ27 Arachis hypogaea
AT3G06868 Arabidopsis thaliana
AT5G49100 Arabidopsis thaliana
ATR0582G207 Amborella trichopoda
Atru.chr6.1996 Acer truncatum
Atru.chr6.1997 Acer truncatum
AUR62014753 Chenopodium quinoa
AUR62016930 Chenopodium quinoa
BcaB04g21300 Brassica carinata
BcaB05g21517 Brassica carinata
BcaB07g34216 Brassica carinata
BcaC03g17695 Brassica carinata
BcaC03g17699 Brassica carinata
BcaC05g30564 Brassica carinata
BcaC09g47926 Brassica carinata
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus
BolC1t05580H Brassica oleracea
BolC2t11774H Brassica oleracea
BolC3t16521H Brassica oleracea
BolC5t34702H Brassica oleracea
BolC7t44491H Brassica oleracea
BraA01t04408Z Brassica rapa
BraA02t08771Z Brassica rapa
BraA03t12673Z Brassica rapa
BraA05t22849Z Brassica rapa
BraA06t26773Z Brassica rapa
C02p57040 Brassica napus
C03p42510 Brassica napus
C05p60480 Brassica napus
C07p39670 Brassica napus
CAN.G261.4 Capsicum annuum
CAN.G484.45 Capsicum annuum
CANSAT78G0081 Cannabis sativa
CARHR081490 Cardamine hirsuta
CARHR182640 Cardamine hirsuta
Carub.0003s0640 Capsella rubella
Carub.0008s0891 Capsella rubella
Ca_01922_v3 Cicer arietinum L.
Ca_21485_v3 Cicer arietinum L.
Cc03_g01680 Coffea canephora
CDE02G0921 Ceratophyllum demersum
CDE02G3640 Ceratophyllum demersum
CDE09G0254 Ceratophyllum demersum
Ciclev10004985m.g Citrus clementina
CiPaw.01G146800 Carya illinoinensis
CiPaw.02G081100 Carya illinoinensis
ClCG04G000950 Citrullus lanatus
ClCG06G005040 Citrullus lanatus
COL.COLO4_13834 Corchorus olitorius
Cpa.g.sc16.193 Carica papaya
CsaV3_3G014790 Cucumis sativus L.
CsaV3_6G023920 Cucumis sativus L.
CSS0031454 Camellia sinensis var. sinensis
DCAR_002474 Daucus carota
DCAR_023290 Daucus carota
DCAR_027060 Daucus carota
DCAR_030514 Daucus carota
Dinv29740 Davidia involucrata
Dinv44362 Davidia involucrata
Duzib052G0413 Durio zibethinus
Duzib212G1014 Durio zibethinus
ECA240G0321 Erigeron canadensis
EL10Ac3g06624 Beta vulgaris
Eucgr.B01602 Eucalyptus grandis
Eucgr.H03942 Eucalyptus grandis
FAN07G2181 Fragaria x ananassa
FAN12G0090 Fragaria x ananassa
FAN12G1565 Fragaria x ananassa
FAN17G2918 Fragaria x ananassa
FvH4_4g18460 Fragaria vesca
Glyma.07G246500 Glycine max
Glyma.09G043300 Glycine max
Glyma.15G149700 Glycine max
Glyma.17G027500 Glycine max
Gohir.A09G238000 Gossypium hirsutum
Gohir.A10G165400 Gossypium hirsutum
Gohir.D09G238900 Gossypium hirsutum
Gohir.D10G171500 Gossypium hirsutum
Gorai.006G261600 Gossypium raimondii
Gorai.011G191600 Gossypium raimondii
GSVIVG01035139001 Vitis vinifera
HanXRQChr03g0089411 Helianthus annuus
HanXRQChr13g0420021 Helianthus annuus
Haze_01180 Corylus avellana
Hma1.2p1_0078F.1_g040430 Hydrangea macrophylla
Hma1.2p1_0147F.1_g065875 Hydrangea macrophylla
Hma1.2p1_1784F.1_g302143 Hydrangea macrophylla
HPP92_021363 Vanilla planifolia
HPP92_023378 Vanilla planifolia
HPP92_024289 Vanilla planifolia
HPP92_024308 Vanilla planifolia
Hund24887 Selenicereus undatus
Lalb_Chr07g0177821 Lupinus albus
Lalb_Chr13g0303541 Lupinus albus
Lalb_Chr15g0083391 Lupinus albus
Lalb_Chr18g0051571 Lupinus albus
Lj4g0014231 Lotus japonicus
Lj6g0014556 Lotus japonicus
Lj6P678T51 Lonicera japonica
Lsat_1_v5_gn_6_95300 Lactuca sativa
Manes.03G197200 Manihot esculenta
Manes.15G011400 Manihot esculenta
MD13G1166900 Malus domestica
MD16G1166700 Malus domestica
Medtr2g436340 Medicago truncatula
Medtr4g120050 Medicago truncatula
MELO3C006676.2 Cucumis melo
MELO3C019194.2 Cucumis melo
MELO3C021319.2 Cucumis melo
MELO3C024134.2 Cucumis melo
MELO3C030438.2 Cucumis melo
Migut.G00140 Erythranthe guttata
Migut.N00085 Erythranthe guttata
MSTRG.3901 Avicennia marina
Nitab4.5_0000513g0170 Nicotiana tabacum
Nitab4.5_0000570g0270 Nicotiana tabacum
Nitab4.5_0000895g0020 Nicotiana tabacum
Nitab4.5_0001233g0020 Nicotiana tabacum
Nitab4.5_0004498g0020 Nicotiana tabacum
Nitab4.5_0005362g0020 Nicotiana tabacum
Nn4g22032 Nelumbo nucifera
Oeu001109.1 Olea europaea
Oeu006408.1 Olea europaea
Oeu016249.1 Olea europaea
Oeu016250.1 Olea europaea
Oeu037701.1 Olea europaea
Oeu053986.1 Olea europaea
Os02g0526700 Oryza sativa ssp. japonica
Os04g0405500 Oryza sativa ssp. japonica
Peaxi162Scf00246g00127 Petunia axillaris
Peaxi162Scf00646g00329 Petunia axillaris
PGR004G2799 Punica granatum
PGR031G2491 Punica granatum
PGSC0003DMG400004631 Solanum tuberosum
PGSC0003DMG400035598 Solanum tuberosum
Phvul.003G096600 Phaseolus vulgaris
Phvul.009G249600 Phaseolus vulgaris
Potri.008G220700 Populus trichocarpa
Potri.010G012000 Populus trichocarpa
Prupe.1G133400 Prunus persica
Psat1g155200 Pisum sativum
Psat4g026560 Pisum sativum
PSO170G6833 Papaver somniferum
PSO357G0352 Papaver somniferum
QL06p009983 Quercus lobata
QL93p2007_0071 Quercus lobata
RcHm_v2.0_Chr4g0422951 Rosa chinensis
Rhsim02G0007700 Rhododendron simsii
Rhsim04G0224500 Rhododendron simsii
Sabra08G0152100 Salix brachista
Sabra10G0007700 Salix brachista
SalBow2G2784 Salvia bowleyana
SalBow5G3057 Salvia bowleyana
Sc08g0008170 Simmondsia chinensis
Sed0000258 Sechium edule
Sed0002765 Sechium edule
Sed0009993 Sechium edule
SEGI_27408 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08346 Striga asiatica
SGA_v2.0_scaffold428G51527 Striga asiatica
SGA_v2.0_scaffold42G16031 Striga asiatica
SGA_v2.0_scaffold67G22614 Striga asiatica
SGA_v2.0_scaffold9G04881 Striga asiatica
SHI00254 Sapria himalayana
Solyc01g066640.2 Solanum lycopersicum
Solyc12g099450.3 Solanum lycopersicum
Sopen01g028290 Solanum pennellii
Sopen12g034120 Solanum pennellii
Sp2g19450 Schrenkiella parvula
Sp3g05830 Schrenkiella parvula
TAR622G1126 Trochodendron aralioides
THA.LOC104803101 Tarenaya hassleriana
THA.LOC104818917 Tarenaya hassleriana
THA.LOC104827338 Tarenaya hassleriana
Thecc.04G287300 Theobroma cacao
Thhalv10004314m.g Eutrema salsugineum
Thhalv10021990m.g Eutrema salsugineum
TPR.G31283 Trifolium pratense
TPR.G3216 Trifolium pratense
TWI09G1044 Tripterygium wilfordii
TWI53G1575 Tripterygium wilfordii
TWI73G0854 Tripterygium wilfordii
unitig_26.g10550 Utricularia gibba
unitig_32.g11868 Utricularia gibba
unitig_748.g8726 Utricularia gibba
unitig_749.g13390 Utricularia gibba
unitig_749.g13391 Utricularia gibba
vmacro08170 Vaccinium macrocarpon
vmacro15219 Vaccinium macrocarpon
VMungo1215G1188 Vigna mungo
VMungo1309G2051 Vigna mungo
Zm00001eb084360 Zea mays
Zm00001eb242460 Zea mays
Zm00001eb340010 Zea mays

User provided reference genes

Program Settings