Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p44210 Brassica napus
A09p22510 Brassica napus
Aa31LG5G13410 Aethionema arabicum
Aa31LG9G6160 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3290 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1655 Anthoceros agrestis
Actinidia25967 Actinidia chinensis
Actinidia34328 Actinidia chinensis
Ah.07g200500 Amaranthus hybridus
Ah.13g072620 Amaranthus hybridus
AL3G12360 Arabidopsis lyrata
AL8G11630 Arabidopsis lyrata
Aqoxy3G02337 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4LBX9Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DDT19Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P9R9ZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X92ZJ3 Arachis hypogaea
AT3G02910 Arabidopsis thaliana
AT5G46720 Arabidopsis thaliana
ATR0665G405 Amborella trichopoda
Atru.chr12.1940 Acer truncatum
Atru.chr6.1687 Acer truncatum
AUR62002088 Chenopodium quinoa
AUR62007298 Chenopodium quinoa
AUR62018707 Chenopodium quinoa
AUR62028206 Chenopodium quinoa
BcaB04g21408 Brassica carinata
BcaB07g30824 Brassica carinata
BcaC04g21688 Brassica carinata
BcaC05g30496 Brassica carinata
BcaNung03546 Brassica carinata
BNapus_Darmor_BZH_scaffold_129p00180 Brassica napus
BolC1t05864H Brassica oleracea
BolC5t35054H Brassica oleracea
BolC9t55743H Brassica oleracea
BraA01t04607Z Brassica rapa
BraA06t23278Z Brassica rapa
BraA09t37855Z Brassica rapa
C09p28820 Brassica napus
C09p76030 Brassica napus
CAN.G909.2 Capsicum annuum
CANSAT21G0738 Cannabis sativa
CANSAT21G1136 Cannabis sativa
CARHR076940 Cardamine hirsuta
CARHR174780 Cardamine hirsuta
Carub.0003s0204 Capsella rubella
Carub.0008s0120 Capsella rubella
Ca_06085_v3 Cicer arietinum L.
Ca_20060_v3 Cicer arietinum L.
CBR_g18962 Chara braunii
Cc09_g03600 Coffea canephora
CDE06G1944 Ceratophyllum demersum
Cfa012450 Carpinus fangiana
Cfa016070 Carpinus fangiana
Ciclev10022433m.g Citrus clementina
Ciclev10032830m.g Citrus clementina
CiPaw.05G214200 Carya illinoinensis
CiPaw.11G094100 Carya illinoinensis
ClCG09G017230 Citrullus lanatus
COL.COLO4_15152 Corchorus olitorius
COL.COLO4_17016 Corchorus olitorius
Cpa.g.sc43.103 Carica papaya
CsaV3_2G014030 Cucumis sativus L.
CsaV3_3G049100 Cucumis sativus L.
CSS0011127 Camellia sinensis var. sinensis
CSS0011794 Camellia sinensis var. sinensis
CSS0035918 Camellia sinensis var. sinensis
CSS0049936 Camellia sinensis var. sinensis
DCAR_020424 Daucus carota
Dinv25222 Davidia involucrata
Dinv28963 Davidia involucrata
Dinv29131 Davidia involucrata
Duzib106G1199 Durio zibethinus
Duzib128G0459 Durio zibethinus
Duzib177G0341 Durio zibethinus
Duzib205G1759 Durio zibethinus
ECA240G3952 Erigeron canadensis
EL10Ac3g05048 Beta vulgaris
EL10Ac5g12100 Beta vulgaris
Eucgr.A02988 Eucalyptus grandis
Eucgr.D02204 Eucalyptus grandis
FAN04G0587 Fragaria x ananassa
FAN08G2934 Fragaria x ananassa
FAN13G0845 Fragaria x ananassa
FAN13G1221 Fragaria x ananassa
FAN18G0275 Fragaria x ananassa
FvH4_5g22190 Fragaria vesca
Glyma.01G017900 Glycine max
Glyma.11G109600 Glycine max
Glyma.12G015700 Glycine max
Gohir.A02G126900 Gossypium hirsutum
Gohir.A03G000100 Gossypium hirsutum
Gohir.A08G156200 Gossypium hirsutum
Gohir.A08G221652 Gossypium hirsutum
Gohir.D03G054100 Gossypium hirsutum
Gohir.D03G172200 Gossypium hirsutum
Gohir.D08G176800 Gossypium hirsutum
Gohir.D08G240800 Gossypium hirsutum
Gorai.003G056800 Gossypium raimondii
Gorai.003G182900 Gossypium raimondii
Gorai.004G184700 Gossypium raimondii
Gorai.004G256100 Gossypium raimondii
GSVIVG01024336001 Vitis vinifera
GSVIVG01024337001 Vitis vinifera
HanXRQChr03g0084311 Helianthus annuus
HanXRQChr17g0536261 Helianthus annuus
Haze_00378 Corylus avellana
Haze_08217 Corylus avellana
Hma1.2p1_0303F.1_g119040 Hydrangea macrophylla
HPP92_007337 Vanilla planifolia
Lalb_Chr19g0140061 Lupinus albus
Lj2g0025236 Lotus japonicus
Lj2P238T17 Lonicera japonica
Lj3g0023105 Lotus japonicus
Lj3P885T39 Lonicera japonica
Lsat_1_v5_gn_3_17981 Lactuca sativa
Lsat_1_v5_gn_6_79800 Lactuca sativa
Manes.01G004625 Manihot esculenta
Manes.01G004840 Manihot esculenta
Manes.09G129000 Manihot esculenta
Mapoly0134s0029 Marchantia polymorpha
MCO04G307 Micromonas commoda
MD07G1310600 Malus domestica
MD16G1273600 Malus domestica
Medtr5g030280 Medicago truncatula
Medtr5g430420 Medicago truncatula
MELO3C003417.2 Cucumis melo
MELO3C021853.2 Cucumis melo
Migut.F00933 Erythranthe guttata
Migut.F02118 Erythranthe guttata
MSTRG.9248 Avicennia marina
Nitab4.5_0000021g0770 Nicotiana tabacum
Nitab4.5_0000083g0170 Nicotiana tabacum
Nitab4.5_0005475g0010 Nicotiana tabacum
Nitab4.5_0005968g0050 Nicotiana tabacum
Oeu023161.1 Olea europaea
Oeu023170.1 Olea europaea
Os03g0854000 Oryza sativa ssp. japonica
Os09g0573150 Oryza sativa ssp. japonica
Os11g0139900 Oryza sativa ssp. japonica
Peaxi162Scf00007g02832 Petunia axillaris
Peaxi162Scf00344g00107 Petunia axillaris
Peaxi162Scf00516g00512 Petunia axillaris
PGSC0003DMG400003457 Solanum tuberosum
PGSC0003DMG400026472 Solanum tuberosum
Phvul.002G140900 Phaseolus vulgaris
Phvul.011G018200 Phaseolus vulgaris
Potri.003G092600 Populus trichocarpa
Potri.019G041100 Populus trichocarpa
Pp3c11_5600 Physcomitrium patens
Pp3c16_6820 Physcomitrium patens
Pp3c23_15710 Physcomitrium patens
Pp3c26_5390 Physcomitrium patens
Pp3c3_15000 Physcomitrium patens
Pp3c4_7820 Physcomitrium patens
Prupe.2G328600 Prunus persica
Prupe.5G034600 Prunus persica
Psat2g136440 Pisum sativum
Psat5g303840 Pisum sativum
PSO478G2948 Papaver somniferum
PSO782G0419 Papaver somniferum
QL09p020971 Quercus lobata
QL09p021122 Quercus lobata
QL09p021133 Quercus lobata
QL12p005023 Quercus lobata
RcHm_v2.0_Chr7g0209861 Rosa chinensis
RcHm_v2.0_Chr7g0209871 Rosa chinensis
Rhsim03G0223700 Rhododendron simsii
Rhsim11G0016000 Rhododendron simsii
Sabra03G0061900 Salix brachista
Sabra19G0051300 Salix brachista
SalBow2G2921 Salvia bowleyana
Sc13g0010970 Simmondsia chinensis
Sc22g0001500 Simmondsia chinensis
Sed0008222 Sechium edule
Sed0014945 Sechium edule
Sed0026972 Sechium edule
SEGI_14010 Sequoiadendron giganteum
SGA_v2.0_scaffold59G20754 Striga asiatica
SGA_v2.0_scaffold91G28052 Striga asiatica
SMO144G0088 Selaginella moellendorffii
Solyc03g097230.1 Solanum lycopersicum
Solyc04g056330.1 Solanum lycopersicum
Sopen03g027980 Solanum pennellii
Sopen04g025230 Solanum pennellii
Sp2g11530 Schrenkiella parvula
Sp3g01970 Schrenkiella parvula
SpUn0036_0080 Schrenkiella parvula
TAR347G0001 Trochodendron aralioides
THA.LOC104802931 Tarenaya hassleriana
THA.LOC104812833 Tarenaya hassleriana
THA.LOC104820902 Tarenaya hassleriana
THA.LOC104827196 Tarenaya hassleriana
Thecc.03G226600 Theobroma cacao
Thecc.05G221600 Theobroma cacao
Thhalv10001053m.g Eutrema salsugineum
Thhalv10021592m.g Eutrema salsugineum
TPR.G1029 Trifolium pratense
TPR.G9832 Trifolium pratense
TWI34G1523 Tripterygium wilfordii
TWI60G1166 Tripterygium wilfordii
unitig_52.g16854 Utricularia gibba
vmacro00326 Vaccinium macrocarpon
vmacro06382 Vaccinium macrocarpon
VMungo1127G0860 Vigna mungo
VMungo1215G0598 Vigna mungo
Zm00001eb064840 Zea mays
Zm00001eb321180 Zea mays

User provided reference genes

Program Settings