Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p44910 Brassica napus
Aa31LG5G12630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4053 Anthoceros agrestis
Actinidia01987 Actinidia chinensis
Actinidia28640 Actinidia chinensis
Ah.03g139040 Amaranthus hybridus
Ah.10g032630 Amaranthus hybridus
Ah.16g106000 Amaranthus hybridus
AL3G11320 Arabidopsis lyrata
AL6G26380 Arabidopsis lyrata
Aqoxy3G00493 Aquilegia oxysepala
Aqoxy3G03592 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9C1MNQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q2QQQQ Arachis hypogaea
AT3G02090 Arabidopsis thaliana
ATR0064G024 Amborella trichopoda
ATR0749G047 Amborella trichopoda
ATR0749G092 Amborella trichopoda
Atru.chr1.3425 Acer truncatum
Atru.chr8.417 Acer truncatum
AUR62003118 Chenopodium quinoa
AUR62007935 Chenopodium quinoa
AUR62018251 Chenopodium quinoa
AUR62037753 Chenopodium quinoa
BcaC05g30323 Brassica carinata
BcaC05g30374 Brassica carinata
BcaC09g47684 Brassica carinata
BNapus_Darmor_BZH_scaffold_113p00140 Brassica napus
BNapus_Darmor_BZH_scaffold_97p00030 Brassica napus
BolC1t05921H Brassica oleracea
BolC5t35110H Brassica oleracea
BraA01t04631Z Brassica rapa
BraA05t23166Z Brassica rapa
C09p75490 Brassica napus
CAN.G206.214 Capsicum annuum
CAN.G616.8 Capsicum annuum
CANSAT64G1717 Cannabis sativa
CARHR076050 Cardamine hirsuta
Carub.0003s0120 Capsella rubella
Carub.0006s1369 Capsella rubella
Ca_22313_v3 Cicer arietinum L.
CBR_g22269 Chara braunii
Cc07_g03950 Coffea canephora
CDE02G3191 Ceratophyllum demersum
CDE04G1519 Ceratophyllum demersum
CDE05G2680 Ceratophyllum demersum
CDE06G0384 Ceratophyllum demersum
Cfa007647 Carpinus fangiana
Cfa023084 Carpinus fangiana
Ciclev10011465m.g Citrus clementina
CiPaw.03G090100 Carya illinoinensis
CiPaw.04G057100 Carya illinoinensis
ClCG07G007340 Citrullus lanatus
COL.COLO4_02309 Corchorus olitorius
COL.COLO4_21398 Corchorus olitorius
Cpa.g.sc14.163 Carica papaya
Cre12.g523850 Chlamydomonas reinhardtii
CsaV3_4G008760 Cucumis sativus L.
CSS0002131 Camellia sinensis var. sinensis
CSS0003522 Camellia sinensis var. sinensis
CSS0006231 Camellia sinensis var. sinensis
CSS0007751 Camellia sinensis var. sinensis
CSS0035256 Camellia sinensis var. sinensis
CSS0045310 Camellia sinensis var. sinensis
CSS0045329 Camellia sinensis var. sinensis
DCAR_005653 Daucus carota
DCAR_011045 Daucus carota
DCAR_023806 Daucus carota
Dinv16718 Davidia involucrata
Dinv34954 Davidia involucrata
Dinv40953 Davidia involucrata
Duzib147G0263 Durio zibethinus
Duzib187G0484 Durio zibethinus
Duzib264G1042 Durio zibethinus
ECA233G3242 Erigeron canadensis
ECA234G2575 Erigeron canadensis
EL10Ac2g03303 Beta vulgaris
EL10Ac6g14972 Beta vulgaris
Eucgr.H00078 Eucalyptus grandis
FAN02G0360 Fragaria x ananassa
FAN05G1568 Fragaria x ananassa
FAN09G4456 Fragaria x ananassa
FAN14G2841 Fragaria x ananassa
FvH4_6g47100 Fragaria vesca
Glyma.08G346200 Glycine max
Glyma.16G087200 Glycine max
Glyma.18G156500 Glycine max
Gohir.A05G371500 Gossypium hirsutum
Gohir.A09G010400 Gossypium hirsutum
Gohir.A11G072200 Gossypium hirsutum
Gohir.D04G044200 Gossypium hirsutum
Gohir.D09G009500 Gossypium hirsutum
Gohir.D11G076300 Gossypium hirsutum
Gorai.006G011200 Gossypium raimondii
Gorai.007G081900 Gossypium raimondii
Gorai.012G049500 Gossypium raimondii
GSVIVG01011510001 Vitis vinifera
GSVIVG01012193001 Vitis vinifera
HanXRQChr08g0211571 Helianthus annuus
HanXRQChr08g0211591 Helianthus annuus
HanXRQChr08g0211601 Helianthus annuus
HanXRQChr08g0211871 Helianthus annuus
HanXRQChr12g0362991 Helianthus annuus
Haze_14446 Corylus avellana
Haze_26314 Corylus avellana
Hma1.2p1_0051F.1_g029650 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134540 Hydrangea macrophylla
Hma1.2p1_0674F.1_g201580 Hydrangea macrophylla
Hma1.2p1_0796F.1_g219160 Hydrangea macrophylla
HPP92_006056 Vanilla planifolia
HPP92_009140 Vanilla planifolia
HPP92_013435 Vanilla planifolia
HPP92_027113 Vanilla planifolia
Hund12049 Selenicereus undatus
Hund25189 Selenicereus undatus
Lalb_Chr01g0022051 Lupinus albus
Lalb_Chr03g0041311 Lupinus albus
Lj1g0018629 Lotus japonicus
Lj4C117T4 Lonicera japonica
Lj6A781T30 Lonicera japonica
Lju41A4G62 Lonicera japonica
Lsat_1_v5_gn_0_29180 Lactuca sativa
Lsat_1_v5_gn_2_7020 Lactuca sativa
Lsat_1_v5_gn_4_12421 Lactuca sativa
Lsat_1_v5_gn_8_47580 Lactuca sativa
Lsat_1_v5_gn_8_6920 Lactuca sativa
Manes.01G097600 Manihot esculenta
Manes.02G053700 Manihot esculenta
Mapoly0009s0206 Marchantia polymorpha
MBI16_g11661_MAGBIO Magnolia biondii
MBI19_g19066_MAGBIO Magnolia biondii
MCO12G394 Micromonas commoda
MD09G1064100 Malus domestica
MD17G1057400 Malus domestica
Medtr7g053330 Medicago truncatula
MELO3C016067.2 Cucumis melo
Migut.H00639 Erythranthe guttata
Migut.K01281 Erythranthe guttata
MSTRG.15453 Avicennia marina
MSTRG.3010 Avicennia marina
MSTRG.3351 Avicennia marina
Nitab4.5_0000565g0210 Nicotiana tabacum
Nitab4.5_0002362g0060 Nicotiana tabacum
Nitab4.5_0008450g0020 Nicotiana tabacum
Nitab4.5_0010051g0030 Nicotiana tabacum
Nn3g17409 Nelumbo nucifera
Oeu000865.2 Olea europaea
Oeu023708.1 Olea europaea
Oeu028262.3 Olea europaea
Os01g0711100 Oryza sativa ssp. japonica
Os03g0212700 Oryza sativa ssp. japonica
Peaxi162Scf00166g00530 Petunia axillaris
Peaxi162Scf00314g00228 Petunia axillaris
PGR102G1979 Punica granatum
PGSC0003DMG400001355 Solanum tuberosum
PGSC0003DMG400028380 Solanum tuberosum
Phvul.008G133900 Phaseolus vulgaris
Phvul.010G024900 Phaseolus vulgaris
Potri.004G118900 Populus trichocarpa
Potri.017G092400 Populus trichocarpa
Pp3c16_17660 Physcomitrium patens
PRCOL_00000027 Prasinoderma coloniale
Prupe.3G256900 Prunus persica
Psat0s3048g0160 Pisum sativum
PSO170G5255 Papaver somniferum
PSO541G2235 Papaver somniferum
PSO675G8937 Papaver somniferum
QL02p067876 Quercus lobata
RcHm_v2.0_Chr2g0166151 Rosa chinensis
Rhsim10G0043800 Rhododendron simsii
Sabra04G0068800 Salix brachista
Sabra17G0081500 Salix brachista
SalBow1G0252 Salvia bowleyana
Sc20g0001850 Simmondsia chinensis
Sed0011430 Sechium edule
Sed0020610 Sechium edule
SEGI_03951 Sequoiadendron giganteum
SEGI_32099 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37095 Striga asiatica
SHI25773 Sapria himalayana
SMO117G0298 Selaginella moellendorffii
Solyc02g088700.4 Solanum lycopersicum
Solyc05g012480.4 Solanum lycopersicum
Sopen02g033410 Solanum pennellii
Sopen05g007290 Solanum pennellii
Sp3g01150 Schrenkiella parvula
TAR371G0606 Trochodendron aralioides
TAR629G1991 Trochodendron aralioides
THA.LOC104802968 Tarenaya hassleriana
THA.LOC104821004 Tarenaya hassleriana
Thecc.04G092700 Theobroma cacao
Thhalv10020493m.g Eutrema salsugineum
TPR.G1214 Trifolium pratense
TPR.G23131 Trifolium pratense
TPR.G27456 Trifolium pratense
TPR.G34529 Trifolium pratense
TWI32G0949 Tripterygium wilfordii
unitig_747.g21845 Utricularia gibba
vmacro01094 Vaccinium macrocarpon
vmacro05652 Vaccinium macrocarpon
VMungo0331G1826 Vigna mungo
VMungo1383G2302 Vigna mungo
Zm00001eb008490 Zea mays
Zm00001eb117690 Zea mays
Zm00001eb308640 Zea mays
Zm00001eb309090 Zea mays
Zm00001eb361310 Zea mays
Zm00001eb400330 Zea mays

User provided reference genes

Program Settings