Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41910 Brassica napus
A05p38800 Brassica napus
A07p13730 Brassica napus
Aa31LG1G12690 Aethionema arabicum
Aa31LG3G2920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.188 Anthoceros agrestis
Actinidia06753 Actinidia chinensis
Actinidia07158 Actinidia chinensis
Actinidia22439 Actinidia chinensis
Actinidia24123 Actinidia chinensis
Ah.03g136830 Amaranthus hybridus
AL3G21680 Arabidopsis lyrata
AL8G37320 Arabidopsis lyrata
Aqoxy1G01184 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.869HPH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B3ZHWF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PCB8SU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QF83UX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V0NN3N Arachis hypogaea
AT3G10350 Arabidopsis thaliana
AT5G60730 Arabidopsis thaliana
ATR0680G328 Amborella trichopoda
Atru.chr12.818 Acer truncatum
Atru.chr3.3588 Acer truncatum
Atru.chr4.431 Acer truncatum
AUR62043812 Chenopodium quinoa
BcaB04g21216 Brassica carinata
BcaB04g21217 Brassica carinata
BcaB05g22666 Brassica carinata
BcaC03g13941 Brassica carinata
BcaC05g29475 Brassica carinata
BcaC09g48102 Brassica carinata
BcaC09g50541 Brassica carinata
BcaNung01627 Brassica carinata
BcaNung01631 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00140 Brassica napus
BolC1t02369H Brassica oleracea
BolC1t05407H Brassica oleracea
BolC2t07194H Brassica oleracea
BolC2t07224H Brassica oleracea
BolC4t23432H Brassica oleracea
BolC4t26093H Brassica oleracea
BolC5t34438H Brassica oleracea
BraA01t04260Z Brassica rapa
BraA05t22671Z Brassica rapa
BraA09t39709Z Brassica rapa
C01p24130 Brassica napus
C02p11500 Brassica napus
C03p17040 Brassica napus
C04p45130 Brassica napus
C05p57830 Brassica napus
CAN.G1358.5 Capsicum annuum
CAN.G476.2 Capsicum annuum
CANSAT56G2535 Cannabis sativa
CARHR084830 Cardamine hirsuta
CARHR274410 Cardamine hirsuta
Carub.0003s0953 Capsella rubella
Carub.0008s2141 Capsella rubella
Ca_10553_v3 Cicer arietinum L.
CBR_g19921 Chara braunii
Cc01_g10790 Coffea canephora
Cc02_g11130 Coffea canephora
CDE02G2851 Ceratophyllum demersum
CDE02G4294 Ceratophyllum demersum
CDE06G2226 Ceratophyllum demersum
CDE08G1293 Ceratophyllum demersum
Ciclev10028528m.g Citrus clementina
Ciclev10030991m.g Citrus clementina
CiPaw.01G270600 Carya illinoinensis
CiPaw.02G172900 Carya illinoinensis
ClCG05G021130 Citrullus lanatus
COL.COLO4_18292 Corchorus olitorius
COL.COLO4_38472 Corchorus olitorius
Cpa.g.sc53.98 Carica papaya
Cpa.g.sc65.13 Carica papaya
Cre05.g245158 Chlamydomonas reinhardtii
Cre24.g755097 Chlamydomonas reinhardtii
CsaV3_5G036130 Cucumis sativus L.
CSS0003969 Camellia sinensis var. sinensis
CSS0007603 Camellia sinensis var. sinensis
CSS0026427 Camellia sinensis var. sinensis
CSS0026599 Camellia sinensis var. sinensis
DCAR_006075 Daucus carota
DCAR_006429 Daucus carota
Dinv31213 Davidia involucrata
Dinv32702 Davidia involucrata
Duzib128G0335 Durio zibethinus
Duzib168G0106 Durio zibethinus
ECA238G1658 Erigeron canadensis
ECA238G4082 Erigeron canadensis
EL10Ac6g14147 Beta vulgaris
Eucgr.G02857 Eucalyptus grandis
Eucgr.J00904 Eucalyptus grandis
FAN03G0674 Fragaria x ananassa
FAN06G0522 Fragaria x ananassa
FAN06G1207 Fragaria x ananassa
FAN06G4609 Fragaria x ananassa
FAN10G0369 Fragaria x ananassa
FvH4_7g18990 Fragaria vesca
Glyma.10G209300 Glycine max
Glyma.20G181300 Glycine max
Gohir.A05G105750 Gossypium hirsutum
Gohir.A05G295200 Gossypium hirsutum
Gohir.A10G204500 Gossypium hirsutum
Gohir.D05G105800 Gossypium hirsutum
Gohir.D05G295900 Gossypium hirsutum
Gohir.D10G212500 Gossypium hirsutum
Gorai.009G109800 Gossypium raimondii
Gorai.009G312500 Gossypium raimondii
Gorai.011G238300 Gossypium raimondii
GSVIVG01016242001 Vitis vinifera
GSVIVG01025229001 Vitis vinifera
HanXRQChr14g0452611 Helianthus annuus
HanXRQChr14g0456221 Helianthus annuus
Haze_16867 Corylus avellana
Hma1.2p1_1458F.1_g284800 Hydrangea macrophylla
HPP92_013048 Vanilla planifolia
Lalb_Chr01g0004451 Lupinus albus
Lalb_Chr01g0004461 Lupinus albus
Lalb_Chr06g0170371 Lupinus albus
Lj2A17G38 Lonicera japonica
Lj3g0021738 Lotus japonicus
Lj5g0020782 Lotus japonicus
Lsat_1_v5_gn_2_103060 Lactuca sativa
Lsat_1_v5_gn_2_99761 Lactuca sativa
Manes.04G017100 Manihot esculenta
Manes.07G095808 Manihot esculenta
Manes.07G095828 Manihot esculenta
Manes.07G096900 Manihot esculenta
Mapoly0037s0120 Marchantia polymorpha
MBI18_g21586_MAGBIO Magnolia biondii
MCO10G054 Micromonas commoda
MD01G1105500 Malus domestica
MD07G1171700 Malus domestica
Medtr1g094680 Medicago truncatula
Medtr4g058005 Medicago truncatula
MELO3C012414.2 Cucumis melo
Migut.D01651 Erythranthe guttata
Migut.D02251 Erythranthe guttata
Migut.F01967 Erythranthe guttata
MSTRG.27476 Avicennia marina
Nitab4.5_0002194g0030 Nicotiana tabacum
Nitab4.5_0004126g0040 Nicotiana tabacum
Nitab4.5_0004479g0080 Nicotiana tabacum
Nitab4.5_0004797g0010 Nicotiana tabacum
Nitab4.5_0007148g0070 Nicotiana tabacum
Nn2g11538 Nelumbo nucifera
Oeu007406.1 Olea europaea
Oeu056299.2 Olea europaea
Os02g0745000 Oryza sativa ssp. japonica
Peaxi162Scf00115g01224 Petunia axillaris
Peaxi162Scf00431g00110 Petunia axillaris
PGR119G0151 Punica granatum
PGR142G1202 Punica granatum
PGSC0003DMG400008075 Solanum tuberosum
Phvul.007G096800 Phaseolus vulgaris
Potri.008G037100 Populus trichocarpa
Potri.010G225100 Populus trichocarpa
Pp3c19_12470 Physcomitrium patens
Pp3c22_13860 Physcomitrium patens
PRCOL_00003341 Prasinoderma coloniale
Prupe.2G211000 Prunus persica
Psat6g182240 Pisum sativum
Psat7g144400 Pisum sativum
PSO063G0716 Papaver somniferum
PSO339G5193 Papaver somniferum
QL08p024183 Quercus lobata
QL08p055153 Quercus lobata
RcHm_v2.0_Chr1g0362921 Rosa chinensis
RcHm_v2.0_Chr7g0193101 Rosa chinensis
Rhsim02G0095100 Rhododendron simsii
Rhsim09G0149700 Rhododendron simsii
Rhsim13G0097900 Rhododendron simsii
Sabra08G0025000 Salix brachista
Sabra10G0174000 Salix brachista
Sc06g0001710 Simmondsia chinensis
Sed0016709 Sechium edule
SEGI_12950 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06377 Striga asiatica
SGA_v2.0_scaffold180G39620 Striga asiatica
SMO143G0002 Selaginella moellendorffii
Solyc04g025120.2 Solanum lycopersicum
Solyc04g025160.3 Solanum lycopersicum
Solyc11g069830.2 Solanum lycopersicum
Sopen04g011550 Solanum pennellii
Sopen11g028450 Solanum pennellii
Sp3g08620 Schrenkiella parvula
Sp6g22310 Schrenkiella parvula
TAR629G2750 Trochodendron aralioides
TAR633G2338 Trochodendron aralioides
THA.LOC104799512 Tarenaya hassleriana
THA.LOC104823204 Tarenaya hassleriana
Thecc.10G077400 Theobroma cacao
Thecc.10G078000 Theobroma cacao
Thecc.10G078500 Theobroma cacao
Thhalv10013776m.g Eutrema salsugineum
Thhalv10020822m.g Eutrema salsugineum
TPR.G1911 Trifolium pratense
TPR.G6163 Trifolium pratense
TPR.G859 Trifolium pratense
TWI38G0463 Tripterygium wilfordii
TWI79G1368 Tripterygium wilfordii
unitig_46.g18600 Utricularia gibba
vmacro03221 Vaccinium macrocarpon
vmacro04854 Vaccinium macrocarpon
VMungo0720G0781 Vigna mungo
Zm00001eb080780 Zea mays
Zm00001eb254530 Zea mays

User provided reference genes

Program Settings