Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p39390 Brassica napus
A05p18820 Brassica napus
Aa31LG10G2320 Aethionema arabicum
Aa31LG8G2840 Aethionema arabicum
Actinidia15805 Actinidia chinensis
Actinidia22016 Actinidia chinensis
Ah.14g080930 Amaranthus hybridus
AL1G61040 Arabidopsis lyrata
AL3G28270 Arabidopsis lyrata
Aqoxy7G02034 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.Y6CH9Q Arachis hypogaea
AT1G52720 Arabidopsis thaliana
AT3G15630 Arabidopsis thaliana
ATR0661G472 Amborella trichopoda
ATR0815G070 Amborella trichopoda
Atru.chr1.3146 Acer truncatum
Atru.chr7.1240 Acer truncatum
AUR62011067 Chenopodium quinoa
AUR62033447 Chenopodium quinoa
BcaB02g10973 Brassica carinata
BcaC01g03867 Brassica carinata
BcaC08g44013 Brassica carinata
BolC3t17054H Brassica oleracea
BolC6t36600H Brassica oleracea
BraA03t13088Z Brassica rapa
BraA05t20779Z Brassica rapa
C03p47770 Brassica napus
C06p14240 Brassica napus
CANSAT56G0897 Cannabis sativa
CANSAT56G3027 Cannabis sativa
CARHR042860 Cardamine hirsuta
CARHR090720 Cardamine hirsuta
Carub.0001s4180 Capsella rubella
Carub.0003s1538 Capsella rubella
Ca_21708_v3 Cicer arietinum L.
Cc04_g03880 Coffea canephora
Cc06_g08980 Coffea canephora
CDE01G0577 Ceratophyllum demersum
CDE03G0311 Ceratophyllum demersum
CDE05G2771 Ceratophyllum demersum
Cfa002023 Carpinus fangiana
Cfa003329 Carpinus fangiana
Ciclev10009900m.g Citrus clementina
Ciclev10026750m.g Citrus clementina
CiPaw.01G243500 Carya illinoinensis
CiPaw.02G154100 Carya illinoinensis
CiPaw.03G239700 Carya illinoinensis
CiPaw.04G169100 Carya illinoinensis
ClCG06G010770 Citrullus lanatus
ClCG09G002560 Citrullus lanatus
ClCG11G002800 Citrullus lanatus
COL.COLO4_12873 Corchorus olitorius
COL.COLO4_15594 Corchorus olitorius
Cpa.g.c33360.2 Carica papaya
Cpa.g.sc75.63 Carica papaya
CsaV3_1G029660 Cucumis sativus L.
CsaV3_2G002620 Cucumis sativus L.
CsaV3_7G032760 Cucumis sativus L.
DCAR_009215 Daucus carota
DCAR_009216 Daucus carota
DCAR_025474 Daucus carota
Dinv36574 Davidia involucrata
Dinv38085 Davidia involucrata
Duzib150G0873 Durio zibethinus
Duzib160G0335 Durio zibethinus
Duzib168G0501 Durio zibethinus
Duzib235G0804 Durio zibethinus
ECA232G3879 Erigeron canadensis
ECA240G3415 Erigeron canadensis
EL10Ac8g18586 Beta vulgaris
Eucgr.C01106 Eucalyptus grandis
Eucgr.C01107 Eucalyptus grandis
Eucgr.C01299 Eucalyptus grandis
Eucgr.C01300 Eucalyptus grandis
Eucgr.C04164 Eucalyptus grandis
Eucgr.F02554 Eucalyptus grandis
FAN19G3144 Fragaria x ananassa
FAN23G2870 Fragaria x ananassa
FAN26G0847 Fragaria x ananassa
FAN28G2745 Fragaria x ananassa
FvH4_1g03940 Fragaria vesca
Glyma.05G010500 Glycine max
Glyma.07G032900 Glycine max
Glyma.08G209300 Glycine max
Glyma.17G118200 Glycine max
Gohir.A05G124500 Gossypium hirsutum
Gohir.A06G058300 Gossypium hirsutum
Gohir.A08G239800 Gossypium hirsutum
Gohir.A10G077400 Gossypium hirsutum
Gohir.A13G198700 Gossypium hirsutum
Gohir.D05G125500 Gossypium hirsutum
Gohir.D06G056600 Gossypium hirsutum
Gohir.D08G260400 Gossypium hirsutum
Gohir.D10G074200 Gossypium hirsutum
Gohir.D13G204100 Gossypium hirsutum
Gorai.004G278400 Gossypium raimondii
Gorai.009G129500 Gossypium raimondii
Gorai.010G066300 Gossypium raimondii
Gorai.011G080000 Gossypium raimondii
Gorai.013G232900 Gossypium raimondii
HanXRQChr03g0062121 Helianthus annuus
HanXRQChr09g0240721 Helianthus annuus
HanXRQChr09g0274831 Helianthus annuus
Haze_16503 Corylus avellana
Haze_25631 Corylus avellana
Hma1.2p1_0018F.1_g012840 Hydrangea macrophylla
Hma1.2p1_0317F.1_g123450 Hydrangea macrophylla
Hma1.2p1_0665F.1_g199290 Hydrangea macrophylla
HPP92_008666 Vanilla planifolia
Lalb_Chr07g0178731 Lupinus albus
Lalb_Chr13g0302101 Lupinus albus
Lj4g0006080 Lotus japonicus
Lsat_1_v5_gn_4_104621 Lactuca sativa
Lsat_1_v5_gn_7_42621 Lactuca sativa
Manes.04G118400 Manihot esculenta
Manes.06G050300 Manihot esculenta
Manes.14G128700 Manihot esculenta
MBI04_g29848_MAGBIO Magnolia biondii
MBI12_g14503_MAGBIO Magnolia biondii
MD02G1037700 Malus domestica
MD15G1177900 Malus domestica
MD17G1203000 Malus domestica
Medtr4g113600 Medicago truncatula
MELO3C004529.2 Cucumis melo
MELO3C023390.2 Cucumis melo
MELO3C026630.2 Cucumis melo
Migut.I00809 Erythranthe guttata
Migut.K00554 Erythranthe guttata
Nitab4.5_0008019g0010 Nicotiana tabacum
Nitab4.5_0022569g0020 Nicotiana tabacum
Nn2g11930 Nelumbo nucifera
Nn8g39360 Nelumbo nucifera
Nn8g39362 Nelumbo nucifera
Oeu014846.1 Olea europaea
Oeu035256.1 Olea europaea
Oeu036255.1 Olea europaea
Oeu036257.1 Olea europaea
Oeu048304.1 Olea europaea
Os01g0175100 Oryza sativa ssp. japonica
Os05g0176700 Oryza sativa ssp. japonica
Peaxi162Scf00361g00062 Petunia axillaris
PGR102G1800 Punica granatum
PGR142G0243 Punica granatum
PGSC0003DMG400024486 Solanum tuberosum
Phvul.003G160900 Phaseolus vulgaris
Phvul.010G153100 Phaseolus vulgaris
Potri.001G174300 Populus trichocarpa
Potri.003G059900 Populus trichocarpa
Prupe.3G078300 Prunus persica
Prupe.7G237500 Prunus persica
Psat0s2572g0040 Pisum sativum
PSO170G2560 Papaver somniferum
PSO455G0107 Papaver somniferum
QL02p087319 Quercus lobata
RcHm_v2.0_Chr2g0089411 Rosa chinensis
RcHm_v2.0_Chr2g0136881 Rosa chinensis
Rhsim01G0078800 Rhododendron simsii
Rhsim01G0078900 Rhododendron simsii
Rhsim01G0080100 Rhododendron simsii
Rhsim01G0080300 Rhododendron simsii
Rhsim01G0081200 Rhododendron simsii
Rhsim01G0081700 Rhododendron simsii
Rhsim01G0082300 Rhododendron simsii
Rhsim01G0082700 Rhododendron simsii
Rhsim01G0083300 Rhododendron simsii
Rhsim01G0083500 Rhododendron simsii
Rhsim01G0084300 Rhododendron simsii
Rhsim01G0085500 Rhododendron simsii
Rhsim01G0086100 Rhododendron simsii
Rhsim08G0217100 Rhododendron simsii
Rhsim08G0217200 Rhododendron simsii
RhsimUnG0081200 Rhododendron simsii
RhsimUnG0155900 Rhododendron simsii
RhsimUnG0156000 Rhododendron simsii
RhsimUnG0239400 Rhododendron simsii
Sabra01G0137700 Salix brachista
Sabra03G0034300 Salix brachista
SalBow2G1050 Salvia bowleyana
Sc08g0006850 Simmondsia chinensis
Sc18g0000850 Simmondsia chinensis
Sed0018936 Sechium edule
Sed0021298 Sechium edule
SEGI_06926 Sequoiadendron giganteum
SGA_v2.0_scaffold5G02649 Striga asiatica
SMO172G0063 Selaginella moellendorffii
Solyc03g114100.1 Solanum lycopersicum
Sopen03g033160 Solanum pennellii
Sp1g39280 Schrenkiella parvula
Sp3g13930 Schrenkiella parvula
TAR625G1039 Trochodendron aralioides
THA.LOC104810503 Tarenaya hassleriana
THA.LOC104815539 Tarenaya hassleriana
THA.LOC104818046 Tarenaya hassleriana
Thecc.06G075300 Theobroma cacao
Thecc.09G120200 Theobroma cacao
Thhalv10012366m.g Eutrema salsugineum
Thhalv10021593m.g Eutrema salsugineum
TWI18G1055 Tripterygium wilfordii
TWI32G0109 Tripterygium wilfordii
TWI75G0688 Tripterygium wilfordii
unitig_0.g364 Utricularia gibba
unitig_60.g25605 Utricularia gibba
unitig_60.g25607 Utricularia gibba
vmacro18954 Vaccinium macrocarpon
vmacro20647 Vaccinium macrocarpon
VMungo1215G0453 Vigna mungo
Zm00001eb122670 Zea mays
Zm00001eb283070 Zea mays
Zm00001eb283080 Zea mays

User provided reference genes

Program Settings