Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p26010 Brassica napus
A09p54490 Brassica napus
Aa31LG10G16440 Aethionema arabicum
Aa31LG1G28780 Aethionema arabicum
Actinidia21011 Actinidia chinensis
Actinidia25835 Actinidia chinensis
Actinidia35529 Actinidia chinensis
Actinidia39283 Actinidia chinensis
AL5G45380 Arabidopsis lyrata
AL6G38410 Arabidopsis lyrata
Aqoxy2G02803 Aquilegia oxysepala
Aqoxy6G02451 Aquilegia oxysepala
AT3G62630 Arabidopsis thaliana
ATR0706G204 Amborella trichopoda
Atru.chr2.147 Acer truncatum
Atru.chr5.1050 Acer truncatum
AUR62000687 Chenopodium quinoa
AUR62005271 Chenopodium quinoa
BcaB02g07333 Brassica carinata
BcaC07g40737 Brassica carinata
BcaC07g40778 Brassica carinata
BcaC08g45206 Brassica carinata
BolC6t38001H Brassica oleracea
BolC8t51316H Brassica oleracea
BraA07t30249Z Brassica rapa
BraA09t40862Z Brassica rapa
C04p30570 Brassica napus
C06p28310 Brassica napus
C08p37380 Brassica napus
CAN.G1273.2 Capsicum annuum
CANSAT54G2803 Cannabis sativa
CARHR172900 Cardamine hirsuta
Carub.0005s2929 Capsella rubella
Ca_10162_v3 Cicer arietinum L.
Cc02_g34800 Coffea canephora
CDE05G1863 Ceratophyllum demersum
CDE11G0260 Ceratophyllum demersum
Cfa005832 Carpinus fangiana
Cfa006685 Carpinus fangiana
Ciclev10001511m.g Citrus clementina
Ciclev10020563m.g Citrus clementina
CiPaw.07G027900 Carya illinoinensis
CiPaw.08G091500 Carya illinoinensis
CiPaw.08G156700 Carya illinoinensis
ClCG02G015100 Citrullus lanatus
ClCG03G017710 Citrullus lanatus
COL.COLO4_04139 Corchorus olitorius
COL.COLO4_23261 Corchorus olitorius
Cpa.g.sc18.7 Carica papaya
Cpa.g.sc48.143 Carica papaya
CsaV3_1G038290 Cucumis sativus L.
CsaV3_2G006930 Cucumis sativus L.
DCAR_012363 Daucus carota
Dinv10073 Davidia involucrata
Dinv24423 Davidia involucrata
Dinv24762 Davidia involucrata
Dinv30870 Davidia involucrata
Dinv33100 Davidia involucrata
Duzib106G1200 Durio zibethinus
Duzib128G0340 Durio zibethinus
Duzib133G0997 Durio zibethinus
Duzib138G1932 Durio zibethinus
Duzib177G0761 Durio zibethinus
Duzib211G0334 Durio zibethinus
ECA234G3267 Erigeron canadensis
EL10Ac4g09832 Beta vulgaris
Eucgr.B01665 Eucalyptus grandis
FAN02G1275 Fragaria x ananassa
FAN05G0778 Fragaria x ananassa
FAN09G4575 Fragaria x ananassa
FAN14G5384 Fragaria x ananassa
FvH4_6g07220 Fragaria vesca
Glyma.03G232100 Glycine max
Glyma.10G148100 Glycine max
Glyma.19G229100 Glycine max
Glyma.20G239500 Glycine max
Gohir.A08G206700 Gossypium hirsutum
Gohir.A11G111000 Gossypium hirsutum
Gohir.A11G272200 Gossypium hirsutum
Gohir.A13G111800 Gossypium hirsutum
Gohir.A13G175300 Gossypium hirsutum
Gohir.D08G223400 Gossypium hirsutum
Gohir.D11G116200 Gossypium hirsutum
Gohir.D11G282400 Gossypium hirsutum
Gohir.D13G114700 Gossypium hirsutum
Gohir.D13G181200 Gossypium hirsutum
Gorai.004G237300 Gossypium raimondii
Gorai.007G124400 Gossypium raimondii
Gorai.007G305200 Gossypium raimondii
Gorai.013G128900 Gossypium raimondii
Gorai.013G206700 Gossypium raimondii
GSVIVG01028087001 Vitis vinifera
HanXRQChr03g0073781 Helianthus annuus
HanXRQChr10g0299241 Helianthus annuus
Haze_04081 Corylus avellana
Haze_05011 Corylus avellana
Hma1.2p1_0008F-1.1_g005770 Hydrangea macrophylla
Hma1.2p1_0472F.1_g159920 Hydrangea macrophylla
HPP92_006895 Vanilla planifolia
Lalb_Chr02g0147891 Lupinus albus
Lalb_Chr04g0260481 Lupinus albus
Lalb_Chr06g0167501 Lupinus albus
Lj1C19T9 Lonicera japonica
Lj1g0001768 Lotus japonicus
Lj5g0008189 Lotus japonicus
Lj5P337T13 Lonicera japonica
Lju1295C4T4 Lonicera japonica
Lsat_1_v5_gn_5_102781 Lactuca sativa
Lsat_1_v5_gn_9_122521 Lactuca sativa
Manes.08G112500 Manihot esculenta
Manes.09G175500 Manihot esculenta
MBI18_g09595_MAGBIO Magnolia biondii
MBI19_g22895_MAGBIO Magnolia biondii
MD04G1195400 Malus domestica
MD12G1207500 Malus domestica
Medtr1g083860 Medicago truncatula
MELO3C004199.2 Cucumis melo
MELO3C015259.2 Cucumis melo
Migut.B00996 Erythranthe guttata
Migut.D00099 Erythranthe guttata
MSTRG.20399 Avicennia marina
MSTRG.21671 Avicennia marina
MSTRG.27960 Avicennia marina
Nitab4.5_0000368g0280 Nicotiana tabacum
Nitab4.5_0009033g0010 Nicotiana tabacum
Nn1g00890 Nelumbo nucifera
Nn1g06455 Nelumbo nucifera
Nn1g08318 Nelumbo nucifera
Nn2g13206 Nelumbo nucifera
Nn2g14322 Nelumbo nucifera
Nn7g35807 Nelumbo nucifera
Oeu006467.1 Olea europaea
Oeu008454.1 Olea europaea
Oeu038566.1 Olea europaea
Oeu053700.1 Olea europaea
Oeu064465.1 Olea europaea
Oeu064808.1 Olea europaea
Os03g0303100 Oryza sativa ssp. japonica
Os11g0672900 Oryza sativa ssp. japonica
Os12g0556900 Oryza sativa ssp. japonica
Peaxi162Scf00673g00111 Petunia axillaris
PGR083G0838 Punica granatum
PGSC0003DMG400045409 Solanum tuberosum
Phvul.001G225700 Phaseolus vulgaris
Phvul.007G200400 Phaseolus vulgaris
Potri.005G019600 Populus trichocarpa
Potri.013G010400 Populus trichocarpa
Prupe.6G315100 Prunus persica
Psat0ss9276g0040 Pisum sativum
PSO210G1568 Papaver somniferum
PSO761G0218 Papaver somniferum
QL03p018283 Quercus lobata
RcHm_v2.0_Chr1g0333511 Rosa chinensis
RcHm_v2.0_Chr1g0352421 Rosa chinensis
RcHm_v2.0_Chr2g0129671 Rosa chinensis
RcHm_v2.0_Chr3g0456851 Rosa chinensis
RcHm_v2.0_Chr5g0038721 Rosa chinensis
RcHm_v2.0_Chr6g0249361 Rosa chinensis
Rhsim01G0289300 Rhododendron simsii
Rhsim11G0093900 Rhododendron simsii
Sabra05G0013100 Salix brachista
Sabra05G0025900 Salix brachista
Sabra13G0009000 Salix brachista
SalBow2G3578 Salvia bowleyana
SalBow4G2044 Salvia bowleyana
SalBow4G2962 Salvia bowleyana
SalBow6G5933 Salvia bowleyana
SalBow8G3220 Salvia bowleyana
Sc09g0002690 Simmondsia chinensis
Sc16g0008920 Simmondsia chinensis
Sed0010633 Sechium edule
Sed0024328 Sechium edule
SEGI_04980 Sequoiadendron giganteum
SEGI_11594 Sequoiadendron giganteum
SEGI_18254 Sequoiadendron giganteum
SEGI_37418 Sequoiadendron giganteum
SEGI_40671 Sequoiadendron giganteum
SGA_v2.0_scaffold334G49055 Striga asiatica
SGA_v2.0_scaffold81G26119 Striga asiatica
SHI19885 Sapria himalayana
SMO356G0693 Selaginella moellendorffii
Solyc01g100310.2 Solanum lycopersicum
Sopen01g043820 Solanum pennellii
Sp5g00880 Schrenkiella parvula
TAR362G0787 Trochodendron aralioides
TAR365G1126 Trochodendron aralioides
TAR633G1026 Trochodendron aralioides
THA.LOC104802192 Tarenaya hassleriana
THA.LOC104817469 Tarenaya hassleriana
THA.LOC104825946 Tarenaya hassleriana
THA.LOC104827699 Tarenaya hassleriana
Thecc.01G310400 Theobroma cacao
Thecc.05G320900 Theobroma cacao
Thhalv10006025m.g Eutrema salsugineum
TPR.G29277 Trifolium pratense
TWI12G1061 Tripterygium wilfordii
TWI18G0328 Tripterygium wilfordii
TWI75G0329 Tripterygium wilfordii
unitig_26.g9475 Utricularia gibba
unitig_26.g9476 Utricularia gibba
unitig_85.g27177 Utricularia gibba
vmacro01553 Vaccinium macrocarpon
VMungo0720G0293 Vigna mungo
VMungo1383G3394 Vigna mungo
Zm00001eb014250 Zea mays
Zm00001eb028330 Zea mays
Zm00001eb165260 Zea mays
Zm00001eb255260 Zea mays
Zm00001eb396400 Zea mays

User provided reference genes

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