Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p31300 Brassica napus
A05p19630 Brassica napus
A08p03000 Brassica napus
Aa31sc437G20 Aethionema arabicum
Aa31sc893G10 Aethionema arabicum
Ah.01g023250 Amaranthus hybridus
Ah.09g231370 Amaranthus hybridus
AL1G59220 Arabidopsis lyrata
AL4G26910 Arabidopsis lyrata
Aqoxy1G01046 Aquilegia oxysepala
Aqoxy3G03348 Aquilegia oxysepala
Aqoxy4G00101 Aquilegia oxysepala
Aqoxy7G04115 Aquilegia oxysepala
Aqoxy7G04118 Aquilegia oxysepala
Aqoxy7G04119 Aquilegia oxysepala
Aqoxy7G04125 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MZL9F0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R4HL53 Arachis hypogaea
AT1G51360 Arabidopsis thaliana
AT2G31670 Arabidopsis thaliana
ATR0377G002 Amborella trichopoda
Atru.chr7.1676 Acer truncatum
Atru.chr7.1677 Acer truncatum
AUR62010009 Chenopodium quinoa
AUR62011596 Chenopodium quinoa
AUR62013000 Chenopodium quinoa
AUR62016411 Chenopodium quinoa
AUR62025184 Chenopodium quinoa
AUR62028990 Chenopodium quinoa
BcaB04g17227 Brassica carinata
BcaB04g17228 Brassica carinata
BcaB04g20425 Brassica carinata
BcaC01g01254 Brassica carinata
BcaC01g01255 Brassica carinata
BcaC05g27343 Brassica carinata
BolC1t03946H Brassica oleracea
BolC3t21305H Brassica oleracea
BolC5t32000H Brassica oleracea
BraA01t03256Z Brassica rapa
BraA05t20868Z Brassica rapa
BraA08t32332Z Brassica rapa
C01p39910 Brassica napus
C03p89820 Brassica napus
C03p89840 Brassica napus
C05p32670 Brassica napus
CAN.G198.16 Capsicum annuum
CANSAT46G0002 Cannabis sativa
CANSAT46G0006 Cannabis sativa
CANSAT56G1662 Cannabis sativa
CANSAT56G4065 Cannabis sativa
CARHR041440 Cardamine hirsuta
CARHR125300 Cardamine hirsuta
Carub.0001s4024 Capsella rubella
Carub.0004s1297 Capsella rubella
Ca_06729_v3 Cicer arietinum L.
Ca_21311_v3 Cicer arietinum L.
Ca_21312_v3 Cicer arietinum L.
CBR_g78881 Chara braunii
Cc06_g11990 Coffea canephora
CDE11G0452 Ceratophyllum demersum
Cfa000438 Carpinus fangiana
Cfa003021 Carpinus fangiana
Ciclev10012522m.g Citrus clementina
CiPaw.03G208300 Carya illinoinensis
CiPaw.04G145000 Carya illinoinensis
CiPaw.09G059300 Carya illinoinensis
ClCG11G001480 Citrullus lanatus
COL.COLO4_18119 Corchorus olitorius
Cpa.g.sc28.70 Carica papaya
CsaV3_2G001200 Cucumis sativus L.
CSS0012521 Camellia sinensis var. sinensis
DCAR_000225 Daucus carota
DCAR_023599 Daucus carota
DCAR_028308 Daucus carota
Dinv25571 Davidia involucrata
Dinv42374 Davidia involucrata
ECA233G4986 Erigeron canadensis
EL10Ac9g21338 Beta vulgaris
Eucgr.B02123 Eucalyptus grandis
Eucgr.C03557 Eucalyptus grandis
Eucgr.K03106 Eucalyptus grandis
FAN19G2299 Fragaria x ananassa
FAN19G3090 Fragaria x ananassa
FAN23G1081 Fragaria x ananassa
FAN23G1755 Fragaria x ananassa
FAN26G2855 Fragaria x ananassa
FAN26G3461 Fragaria x ananassa
FAN28G0807 Fragaria x ananassa
FAN28G2135 Fragaria x ananassa
FvH4_1g08350 Fragaria vesca
FvH4_1g08360 Fragaria vesca
Glyma.11G061500 Glycine max
Glyma.13G108800 Glycine max
Glyma.15G176100 Glycine max
Glyma.17G050600 Glycine max
Glyma.17G050700 Glycine max
Gohir.A05G033001 Gossypium hirsutum
Gohir.A07G014600 Gossypium hirsutum
Gohir.D05G034500 Gossypium hirsutum
Gohir.D07G014300 Gossypium hirsutum
Gorai.001G015100 Gossypium raimondii
Gorai.009G034900 Gossypium raimondii
GSVIVG01015103001 Vitis vinifera
HanXRQChr10g0319651 Helianthus annuus
HanXRQChr12g0355351 Helianthus annuus
Haze_06473 Corylus avellana
Haze_06476 Corylus avellana
Haze_25978 Corylus avellana
Hma1.2p1_0169F.1_g074670 Hydrangea macrophylla
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla
HPP92_023461 Vanilla planifolia
HPP92_023470 Vanilla planifolia
HPP92_024331 Vanilla planifolia
Lalb_Chr07g0181081 Lupinus albus
Lalb_Chr13g0299531 Lupinus albus
Lj3g0007166 Lotus japonicus
Lj3g0017073 Lotus japonicus
Lj4g0014141 Lotus japonicus
Lj4g0019774 Lotus japonicus
Lj6g0011531 Lotus japonicus
Lj7C684T2 Lonicera japonica
Lj7C684T3 Lonicera japonica
Lsat_1_v5_gn_3_5080 Lactuca sativa
Lsat_1_v5_gn_3_8021 Lactuca sativa
Lsat_1_v5_gn_5_134660 Lactuca sativa
Lsat_1_v5_gn_5_141361 Lactuca sativa
Lsat_1_v5_gn_5_141381 Lactuca sativa
Lsat_1_v5_gn_7_13541 Lactuca sativa
Manes.03G039000 Manihot esculenta
Manes.16G097000 Manihot esculenta
Mapoly0050s0059 Marchantia polymorpha
MBI14_g17369_MAGBIO Magnolia biondii
MBI19_g11841_MAGBIO Magnolia biondii
MD15G1215300 Malus domestica
Medtr0121s0060 Medicago truncatula
Medtr4g125530 Medicago truncatula
Medtr4g125560 Medicago truncatula
MELO3C004648.2 Cucumis melo
Migut.D01305 Erythranthe guttata
Migut.L01549 Erythranthe guttata
Migut.L01550 Erythranthe guttata
MSTRG.10521 Avicennia marina
Nitab4.5_0000343g0050 Nicotiana tabacum
Nn1g00049 Nelumbo nucifera
Nn1g03690 Nelumbo nucifera
Nn1g06668 Nelumbo nucifera
Nn6g35602 Nelumbo nucifera
Nn8g38698 Nelumbo nucifera
Oeu010808.1 Olea europaea
Oeu035904.1 Olea europaea
Oeu035905.1 Olea europaea
Oeu063412.1 Olea europaea
Os07g0609000 Oryza sativa ssp. japonica
Peaxi162Scf00073g00132 Petunia axillaris
Peaxi162Scf00073g00133 Petunia axillaris
Peaxi162Scf00127g00006 Petunia axillaris
Peaxi162Scf00128g00142 Petunia axillaris
PGR044G0627 Punica granatum
PGSC0003DMG400019568 Solanum tuberosum
Phvul.003G132200 Phaseolus vulgaris
Phvul.009G228300 Phaseolus vulgaris
Potri.001G413500 Populus trichocarpa
Potri.011G125701 Populus trichocarpa
Pp3c15_7020 Physcomitrium patens
Prupe.7G202000 Prunus persica
Psat1g133280 Pisum sativum
Psat4g017360 Pisum sativum
Psat4g017400 Pisum sativum
PSO210G6784 Papaver somniferum
PSO386G0167 Papaver somniferum
QL02p060441 Quercus lobata
QL02p060735 Quercus lobata
QL05p040193 Quercus lobata
RcHm_v2.0_Chr2g0094401 Rosa chinensis
Rhsim03G0229500 Rhododendron simsii
Sabra11G0116400 Salix brachista
Sabra16G0273800 Salix brachista
Sabra16G0274300 Salix brachista
Sabra16G0278400 Salix brachista
Sc08g0008820 Simmondsia chinensis
Sc18g0006280 Simmondsia chinensis
Sed0020871 Sechium edule
SEGI_09180 Sequoiadendron giganteum
SEGI_09665 Sequoiadendron giganteum
SEGI_21922 Sequoiadendron giganteum
SGA_v2.0_scaffold385G50444 Striga asiatica
SMO364G0166 Selaginella moellendorffii
Solyc07g041490.3 Solanum lycopersicum
Sopen07g021020 Solanum pennellii
Sp3g21430 Schrenkiella parvula
SpUn0424_0010 Schrenkiella parvula
TAR636G0880 Trochodendron aralioides
THA.LOC104815326 Tarenaya hassleriana
Thecc.09G079800 Theobroma cacao
Thhalv10002638m.g Eutrema salsugineum
Thhalv10005555m.g Eutrema salsugineum
Thhalv10011777m.g Eutrema salsugineum
Thhalv10015642m.g Eutrema salsugineum
TPR.G504 Trifolium pratense
TPR.G9445 Trifolium pratense
TWI32G0380 Tripterygium wilfordii
TWI63G0970 Tripterygium wilfordii
unitig_8.g4275 Utricularia gibba
vmacro06324 Vaccinium macrocarpon
vmacro06325 Vaccinium macrocarpon
VMungo1215G0209 Vigna mungo
VMungo1215G3032 Vigna mungo
VMungo1309G1999 Vigna mungo
Zm00001eb327260 Zea mays

User provided reference genes

Program Settings