Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p20770 Brassica napus
A05p08330 Brassica napus
Aa31LG5G23120 Aethionema arabicum
Actinidia05315 Actinidia chinensis
Actinidia13145 Actinidia chinensis
Ah.09g232000 Amaranthus hybridus
Ah.14g085420 Amaranthus hybridus
AL4G34140 Arabidopsis lyrata
AL4G34200 Arabidopsis lyrata
Aqoxy4G02897 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2DN1X0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z9PFJZ Arachis hypogaea
AT2G37630 Arabidopsis thaliana
ATR0807G158 Amborella trichopoda
Atru.chr8.1979 Acer truncatum
Atru.chr8.836 Acer truncatum
AUR62025762 Chenopodium quinoa
AUR62030471 Chenopodium quinoa
AUR62041017 Chenopodium quinoa
AUR62041337 Chenopodium quinoa
AUR62041339 Chenopodium quinoa
AUR62044763 Chenopodium quinoa
BcaB01g03765 Brassica carinata
BcaB02g09267 Brassica carinata
BcaC01g05604 Brassica carinata
BcaC02g11882 Brassica carinata
BolC3t14840H Brassica oleracea
BolC4t22631H Brassica oleracea
BraA03t11318Z Brassica rapa
BraA05t19798Z Brassica rapa
C03p24410 Brassica napus
C04p10320 Brassica napus
CAN.G1364.4 Capsicum annuum
CAN.G326.1 Capsicum annuum
CAN.G358.135 Capsicum annuum
CAN.G499.1 Capsicum annuum
CAN.G770.6 Capsicum annuum
CAN.G770.8 Capsicum annuum
CANSAT64G0942 Cannabis sativa
CANSAT64G1932 Cannabis sativa
CARHR131950 Cardamine hirsuta
Carub.0004s1956 Capsella rubella
Ca_07552_v3 Cicer arietinum L.
CBR_g66784 Chara braunii
Cc06_g02600 Coffea canephora
Cc07_g09050 Coffea canephora
CDE04G2860 Ceratophyllum demersum
CDE07G1063 Ceratophyllum demersum
CDE08G1375 Ceratophyllum demersum
Cfa007950 Carpinus fangiana
Cfa017373 Carpinus fangiana
Ciclev10011915m.g Citrus clementina
Ciclev10012089m.g Citrus clementina
CiPaw.03G059300 Carya illinoinensis
CiPaw.04G040200 Carya illinoinensis
CiPaw.09G192900 Carya illinoinensis
ClCG05G012050 Citrullus lanatus
ClCG10G021170 Citrullus lanatus
COL.COLO4_14794 Corchorus olitorius
COL.COLO4_16194 Corchorus olitorius
Cpa.g.sc333.1 Carica papaya
CsaV3_3G020410 Cucumis sativus L.
CsaV3_3G034870 Cucumis sativus L.
CSS0014555 Camellia sinensis var. sinensis
CSS0015300 Camellia sinensis var. sinensis
DCAR_009227 Daucus carota
DCAR_017860 Daucus carota
DCAR_020848 Daucus carota
Dinv34852 Davidia involucrata
Dinv35596 Davidia involucrata
Dinv37168 Davidia involucrata
Duzib093G0316 Durio zibethinus
Duzib106G1674 Durio zibethinus
Duzib128G1068 Durio zibethinus
Duzib133G1290 Durio zibethinus
Duzib138G0350 Durio zibethinus
ECA232G1351 Erigeron canadensis
ECA232G1852 Erigeron canadensis
EL10Ac5g11590 Beta vulgaris
Eucgr.A00191 Eucalyptus grandis
Eucgr.H01113 Eucalyptus grandis
Eucgr.K03130 Eucalyptus grandis
FAN02G3542 Fragaria x ananassa
FAN02G4009 Fragaria x ananassa
FAN05G3825 Fragaria x ananassa
FAN05G3959 Fragaria x ananassa
FAN09G0456 Fragaria x ananassa
FAN09G3920 Fragaria x ananassa
FAN14G3579 Fragaria x ananassa
FAN14G4557 Fragaria x ananassa
FvH4_2g38350 Fragaria vesca
FvH4_6g13640 Fragaria vesca
FvH4_6g45380 Fragaria vesca
Glyma.03G081900 Glycine max
Glyma.07G132400 Glycine max
Glyma.18G151400 Glycine max
Glyma.18G181300 Glycine max
Gohir.A04G082600 Gossypium hirsutum
Gohir.D04G121600 Gossypium hirsutum
Gorai.012G104100 Gossypium raimondii
GSVIVG01034166001 Vitis vinifera
GSVIVG01036446001 Vitis vinifera
HanXRQChr03g0084331 Helianthus annuus
HanXRQChr09g0260961 Helianthus annuus
HanXRQChr09g0261781 Helianthus annuus
Haze_14125 Corylus avellana
Haze_20796 Corylus avellana
Hma1.2p1_0408F.1_g146670 Hydrangea macrophylla
Hma1.2p1_0936F.1_g238715 Hydrangea macrophylla
Hma1.2p1_1899F.1_g306940 Hydrangea macrophylla
HPP92_006615 Vanilla planifolia
HPP92_028579 Vanilla planifolia
Lalb_Chr19g0125311 Lupinus albus
Lj2C94T2 Lonicera japonica
Lj3g0003043 Lotus japonicus
Lj3g0019444 Lotus japonicus
Lsat_1_v5_gn_4_153581 Lactuca sativa
Manes.08G080011 Manihot esculenta
Manes.09G092900 Manihot esculenta
Mapoly0040s0004 Marchantia polymorpha
MBI05_g22030_MAGBIO Magnolia biondii
MBI09_g05211_MAGBIO Magnolia biondii
MBI09_g05212_MAGBIO Magnolia biondii
MBI09_g36361_MAGBIO Magnolia biondii
MD04G1129500 Malus domestica
MD12G1142500 Malus domestica
MD17G1073900 Malus domestica
Medtr7g061550 Medicago truncatula
MELO3C023770.2 Cucumis melo
MELO3C030739.2 Cucumis melo
Migut.L00302 Erythranthe guttata
Migut.L01947 Erythranthe guttata
MSTRG.15286 Avicennia marina
MSTRG.26777 Avicennia marina
Nitab4.5_0000052g0320 Nicotiana tabacum
Nitab4.5_0003845g0050 Nicotiana tabacum
Nitab4.5_0004118g0080 Nicotiana tabacum
Nitab4.5_0007139g0020 Nicotiana tabacum
Nitab4.5_0007287g0010 Nicotiana tabacum
Nitab4.5_0008887g0050 Nicotiana tabacum
Nn1g07529 Nelumbo nucifera
Nn2g11113 Nelumbo nucifera
Nn2g13345 Nelumbo nucifera
Nn3g17750 Nelumbo nucifera
Nn7g36255 Nelumbo nucifera
Nn8g39116 Nelumbo nucifera
Oeu001863.1 Olea europaea
Oeu016471.1 Olea europaea
Oeu049252.1 Olea europaea
Oeu052994.1 Olea europaea
Os12g0572000 Oryza sativa ssp. japonica
Peaxi162Scf00165g00111 Petunia axillaris
PGR004G0678 Punica granatum
PGR119G1544 Punica granatum
PGSC0003DMG400008834 Solanum tuberosum
Phvul.008G102300 Phaseolus vulgaris
Phvul.010G009800 Phaseolus vulgaris
Phvul.010G009900 Phaseolus vulgaris
Potri.004G102600 Populus trichocarpa
Potri.006G085900 Populus trichocarpa
Potri.017G112300 Populus trichocarpa
Prupe.6G255800 Prunus persica
Psat1g061120 Pisum sativum
Psat3g139520 Pisum sativum
PSO339G2503 Papaver somniferum
PSO339G4026 Papaver somniferum
PSO384G4328 Papaver somniferum
QL02p052683 Quercus lobata
QL07p048411 Quercus lobata
QL07p048500 Quercus lobata
RcHm_v2.0_Chr2g0163191 Rosa chinensis
RcHm_v2.0_Chr3g0466491 Rosa chinensis
Rhsim05G0193400 Rhododendron simsii
Sabra06G0065400 Salix brachista
Sabra17G0093100 Salix brachista
SalBow4G1476 Salvia bowleyana
SalBow4G1884 Salvia bowleyana
SalBow4G2178 Salvia bowleyana
SalBow4G2946 Salvia bowleyana
SalBow5G4436 Salvia bowleyana
SalBow5G5400 Salvia bowleyana
Sc20g0004980 Simmondsia chinensis
Sed0010131 Sechium edule
Sed0011900 Sechium edule
Sed0026929 Sechium edule
SEGI_16309 Sequoiadendron giganteum
SEGI_27050 Sequoiadendron giganteum
SGA_v2.0_scaffold94G28601 Striga asiatica
SHI12691 Sapria himalayana
SMO364G0552 Selaginella moellendorffii
Solyc09g010840.1 Solanum lycopersicum
Sopen09g005570 Solanum pennellii
Sp4g19990 Schrenkiella parvula
TAR369G0046 Trochodendron aralioides
TAR371G0868 Trochodendron aralioides
TAR633G2142 Trochodendron aralioides
THA.LOC104806562 Tarenaya hassleriana
Thecc.04G138000 Theobroma cacao
Thecc.05G039300 Theobroma cacao
Thhalv10016830m.g Eutrema salsugineum
TPR.G23297 Trifolium pratense
TWI53G0245 Tripterygium wilfordii
TWI74G0683 Tripterygium wilfordii
unitig_26.g9411 Utricularia gibba
unitig_736.g22555 Utricularia gibba
unitig_749.g13611 Utricularia gibba
vmacro20160 Vaccinium macrocarpon
VMungo0331G0434 Vigna mungo
VMungo0331G1871 Vigna mungo
VMungo1383G2387 Vigna mungo
Zm00001eb029300 Zea mays

User provided reference genes

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