Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p15710 Brassica napus
A07p42700 Brassica napus
Aa31LG4G7160 Aethionema arabicum
Aa31sc367G40 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2329 Anthoceros agrestis
Ah.05g167550 Amaranthus hybridus
AL2G28300 Arabidopsis lyrata
AL2G37300 Arabidopsis lyrata
Aqoxy3G00518 Aquilegia oxysepala
Aqoxy3G00819 Aquilegia oxysepala
Aqoxy5G02191 Aquilegia oxysepala
Aqoxy5G02192 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.535YF1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5V4LVB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6NGM5D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EV65WI Arachis hypogaea
AT1G69210 Arabidopsis thaliana
AT1G77122 Arabidopsis thaliana
ATR1098G144 Amborella trichopoda
ATR1136G164 Amborella trichopoda
Atru.chr11.1610 Acer truncatum
Atru.chr13.2268 Acer truncatum
AUR62003085 Chenopodium quinoa
AUR62007902 Chenopodium quinoa
AUR62013496 Chenopodium quinoa
AUR62026780 Chenopodium quinoa
BcaC03g15062 Brassica carinata
BcaC08g47210 Brassica carinata
BcaNung04777 Brassica carinata
BolC2t08682H Brassica oleracea
BolC6t39362H Brassica oleracea
BolC6t40150H Brassica oleracea
BraA02t06632Z Brassica rapa
BraA07t31792Z Brassica rapa
C02p26150 Brassica napus
C06p40700 Brassica napus
C06p51290 Brassica napus
CAN.G707.18 Capsicum annuum
CANSAT25G3175 Cannabis sativa
CANSAT64G0265 Cannabis sativa
CARHR062090 Cardamine hirsuta
CARHR070600 Cardamine hirsuta
Carub.0002s1580 Capsella rubella
Carub.0002s2401 Capsella rubella
Ca_04997_v3 Cicer arietinum L.
Ca_16653_v3 Cicer arietinum L.
Cc10_g12860 Coffea canephora
Cc11_g11840 Coffea canephora
CDE02G3342 Ceratophyllum demersum
CDE05G3480 Ceratophyllum demersum
Cfa018361 Carpinus fangiana
Ciclev10001907m.g Citrus clementina
Ciclev10032243m.g Citrus clementina
CiPaw.06G093000 Carya illinoinensis
CiPaw.16G017600 Carya illinoinensis
ClCG05G023640 Citrullus lanatus
ClCG08G006460 Citrullus lanatus
COL.COLO4_07952 Corchorus olitorius
COL.COLO4_27861 Corchorus olitorius
Cpa.g.sc49.62 Carica papaya
Cpa.g.sc74.8 Carica papaya
Cre06.g290150 Chlamydomonas reinhardtii
CsaV3_5G033380 Cucumis sativus L.
CsaV3_6G030960 Cucumis sativus L.
CSS0001402 Camellia sinensis var. sinensis
CSS0010604 Camellia sinensis var. sinensis
CSS0022285 Camellia sinensis var. sinensis
CSS0028568 Camellia sinensis var. sinensis
DCAR_010231 Daucus carota
DCAR_026681 Daucus carota
Dinv34057 Davidia involucrata
Dinv41120 Davidia involucrata
Duzib248G1180 Durio zibethinus
Duzib251G0111 Durio zibethinus
ECA246G4739 Erigeron canadensis
ECA246G5345 Erigeron canadensis
EL10Ac1g01476 Beta vulgaris
EL10Ac6g15015 Beta vulgaris
Eucgr.F02739 Eucalyptus grandis
Eucgr.G02432 Eucalyptus grandis
FAN07G2400 Fragaria x ananassa
FAN12G0902 Fragaria x ananassa
FAN15G2791 Fragaria x ananassa
FAN17G0356 Fragaria x ananassa
FAN20G1080 Fragaria x ananassa
FAN22G1368 Fragaria x ananassa
FAN24G1831 Fragaria x ananassa
FAN27G0383 Fragaria x ananassa
FvH4_2g14620 Fragaria vesca
FvH4_4g29740 Fragaria vesca
Glyma.01G061900 Glycine max
Glyma.02G120100 Glycine max
Glyma.04G240500 Glycine max
Glyma.06G122900 Glycine max
Glyma.06G122950 Glycine max
Gohir.A05G241800 Gossypium hirsutum
Gohir.A13G083700 Gossypium hirsutum
Gohir.D05G243100 Gossypium hirsutum
Gohir.D13G083300 Gossypium hirsutum
Gorai.009G252400 Gossypium raimondii
Gorai.013G095100 Gossypium raimondii
GSVIVG01010034001 Vitis vinifera
GSVIVG01012234001 Vitis vinifera
HanXRQChr08g0232571 Helianthus annuus
HanXRQChr12g0375131 Helianthus annuus
HanXRQChr15g0477141 Helianthus annuus
Haze_11889 Corylus avellana
Haze_17713 Corylus avellana
Hma1.2p1_0473F.1_g160290 Hydrangea macrophylla
Hma1.2p1_1977F.1_g309770 Hydrangea macrophylla
Hma1.2p1_2059F.1_g312860 Hydrangea macrophylla
HPP92_005673 Vanilla planifolia
HPP92_015665 Vanilla planifolia
Hund05831 Selenicereus undatus
Hund26727 Selenicereus undatus
Hund26728 Selenicereus undatus
Lalb_Chr10g0098921 Lupinus albus
Lalb_Chr11g0066441 Lupinus albus
Lj1g0028017 Lotus japonicus
Lj2g0002793 Lotus japonicus
Lj3A1029T44 Lonicera japonica
Lj4A691T75 Lonicera japonica
Lsat_1_v5_gn_3_53741 Lactuca sativa
Lsat_1_v5_gn_6_96600 Lactuca sativa
Manes.01G026850 Manihot esculenta
Manes.02G175400 Manihot esculenta
Mapoly0025s0053 Marchantia polymorpha
MBI06_g18872_MAGBIO Magnolia biondii
MCO16G443 Micromonas commoda
MD05G1016000 Malus domestica
MD13G1060300 Malus domestica
Medtr3g090140 Medicago truncatula
Medtr5g045020 Medicago truncatula
MELO3C008408.2 Cucumis melo
MELO3C012158.2 Cucumis melo
Migut.C01038 Erythranthe guttata
Migut.L01177 Erythranthe guttata
MSTRG.25331 Avicennia marina
MSTRG.764 Avicennia marina
Nitab4.5_0000165g0020 Nicotiana tabacum
Nitab4.5_0000231g0070 Nicotiana tabacum
Nitab4.5_0001354g0070 Nicotiana tabacum
Nitab4.5_0007734g0070 Nicotiana tabacum
Nn4g23474 Nelumbo nucifera
Nn5g28626 Nelumbo nucifera
Oeu007011.1 Olea europaea
Oeu031534.1 Olea europaea
Os01g0594650 Oryza sativa ssp. japonica
Os04g0438300 Oryza sativa ssp. japonica
Os07g0155200 Oryza sativa ssp. japonica
Peaxi162Scf00130g00920 Petunia axillaris
Peaxi162Scf00175g00420 Petunia axillaris
PGR042G0343 Punica granatum
PGSC0003DMG400028364 Solanum tuberosum
Phvul.003G040900 Phaseolus vulgaris
Phvul.009G135000 Phaseolus vulgaris
Potri.002G071700 Populus trichocarpa
Potri.010G157300 Populus trichocarpa
Pp3c15_13830 Physcomitrium patens
PRCOL_00004581 Prasinoderma coloniale
Prupe.1G289100 Prunus persica
Prupe.8G019400 Prunus persica
Psat0s2193g0160 Pisum sativum
Psat2g131600 Pisum sativum
PSO017G5009 Papaver somniferum
PSO478G3185 Papaver somniferum
PSO541G0284 Papaver somniferum
QL02p025275 Quercus lobata
QL03p073804 Quercus lobata
RcHm_v2.0_Chr4g0438001 Rosa chinensis
RcHm_v2.0_Chr6g0277091 Rosa chinensis
Rhsim09G0126200 Rhododendron simsii
Rhsim10G0083200 Rhododendron simsii
Sabra02G0056500 Salix brachista
Sabra10G0119400 Salix brachista
SalBow2G3033 Salvia bowleyana
SalBow7G0099 Salvia bowleyana
SalBow7G3303 Salvia bowleyana
Sc04g0007500 Simmondsia chinensis
Sc11g0004110 Simmondsia chinensis
Sed0001803 Sechium edule
Sed0007582 Sechium edule
SEGI_04642 Sequoiadendron giganteum
SEGI_17187 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07804 Striga asiatica
SGA_v2.0_scaffold48G17947 Striga asiatica
SGA_v2.0_scaffold87G26964 Striga asiatica
Solyc05g012120.3 Solanum lycopersicum
Sopen05g006910 Solanum pennellii
Sp5g32263 Schrenkiella parvula
Sp6g08790 Schrenkiella parvula
TAR381G1145 Trochodendron aralioides
TAR385G0001 Trochodendron aralioides
TAR629G1435 Trochodendron aralioides
THA.LOC104813692 Tarenaya hassleriana
THA.LOC104822006 Tarenaya hassleriana
Thecc.02G328200 Theobroma cacao
Thecc.08G145000 Theobroma cacao
Thhalv10018935m.g Eutrema salsugineum
Thhalv10019703m.g Eutrema salsugineum
TPR.G21970 Trifolium pratense
TPR.G23766 Trifolium pratense
TWI60G0779 Tripterygium wilfordii
TWI79G0802 Tripterygium wilfordii
unitig_22.g6490 Utricularia gibba
unitig_747.g21499 Utricularia gibba
vmacro05471 Vaccinium macrocarpon
vmacro10435 Vaccinium macrocarpon
vmacro20925 Vaccinium macrocarpon
VMungo1215G0965 Vigna mungo
Zm00001eb082320 Zea mays
Zm00001eb117470 Zea mays

User provided reference genes

Program Settings