Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p16130 Brassica napus
A03p55560 Brassica napus
A08p21360 Brassica napus
A09p13870 Brassica napus
Aa31LG7G11020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4449 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2231 Anthoceros agrestis
Actinidia16191 Actinidia chinensis
Actinidia25611 Actinidia chinensis
Actinidia25612 Actinidia chinensis
Ah.08g218090 Amaranthus hybridus
Ah.15g095310 Amaranthus hybridus
AL7G28360 Arabidopsis lyrata
Aqoxy1G01463 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea
AT4G24820 Arabidopsis thaliana
ATR0681G172 Amborella trichopoda
ATR0824G170 Amborella trichopoda
Atru.chr9.1015 Acer truncatum
AUR62001280 Chenopodium quinoa
AUR62025726 Chenopodium quinoa
BcaB03g12449 Brassica carinata
BcaC06g32856 Brassica carinata
BcaC07g38153 Brassica carinata
BcaNung07243 Brassica carinata
BolC1t01941H Brassica oleracea
BolC7t45870H Brassica oleracea
BolC8t48588H Brassica oleracea
BraA01t01549Z Brassica rapa
BraA03t14625Z Brassica rapa
BraA08t34085Z Brassica rapa
C01p20120 Brassica napus
C07p53800 Brassica napus
CAN.G5443.1 Capsicum annuum
CAN.G886.11 Capsicum annuum
CAN.G990.3 Capsicum annuum
CAN.G990.4 Capsicum annuum
CANSAT80G0340 Cannabis sativa
CARHR232220 Cardamine hirsuta
CARHR238350 Cardamine hirsuta
Carub.0007s1623 Capsella rubella
Ca_05563_v3 Cicer arietinum L.
CBR_g40800 Chara braunii
Cc04_g10290 Coffea canephora
CDE04G0976 Ceratophyllum demersum
CDE07G0656 Ceratophyllum demersum
Cfa018890 Carpinus fangiana
Cfa025062 Carpinus fangiana
Ciclev10020559m.g Citrus clementina
CiPaw.11G011900 Carya illinoinensis
CiPaw.12G035900 Carya illinoinensis
ClCG03G003520 Citrullus lanatus
COL.COLO4_22963 Corchorus olitorius
Cpa.g.sc4.74 Carica papaya
Cre13.g581450 Chlamydomonas reinhardtii
CsaV3_1G009320 Cucumis sativus L.
CSS0000638 Camellia sinensis var. sinensis
CSS0000758 Camellia sinensis var. sinensis
CSS0004138 Camellia sinensis var. sinensis
CSS0006566 Camellia sinensis var. sinensis
CSS0008999 Camellia sinensis var. sinensis
CSS0014635 Camellia sinensis var. sinensis
CSS0020325 Camellia sinensis var. sinensis
CSS0035074 Camellia sinensis var. sinensis
CSS0036492 Camellia sinensis var. sinensis
CSS0042115 Camellia sinensis var. sinensis
CSS0046486 Camellia sinensis var. sinensis
DCAR_027511 Daucus carota
Dinv11105 Davidia involucrata
Dinv38467 Davidia involucrata
Duzib068G0069 Durio zibethinus
Duzib084G0381 Durio zibethinus
Duzib205G0731 Durio zibethinus
ECA232G2465 Erigeron canadensis
EL10Ac7g18076 Beta vulgaris
Eucgr.I00301 Eucalyptus grandis
Eucgr.K02756 Eucalyptus grandis
FAN04G2436 Fragaria x ananassa
FAN11G1198 Fragaria x ananassa
FAN13G1328 Fragaria x ananassa
FAN16G0231 Fragaria x ananassa
FAN21G3720 Fragaria x ananassa
FAN25G3633 Fragaria x ananassa
FvH4_3g25540 Fragaria vesca
FvH4_5g07210 Fragaria vesca
FvH4_5g07531 Fragaria vesca
Glyma.05G044500 Glycine max
Glyma.05G044900 Glycine max
Glyma.17G127100 Glycine max
Gohir.A03G062400 Gossypium hirsutum
Gohir.A09G245000 Gossypium hirsutum
Gohir.A12G188100 Gossypium hirsutum
Gohir.D02G137350 Gossypium hirsutum
Gohir.D03G103700 Gossypium hirsutum
Gohir.D09G245900 Gossypium hirsutum
Gohir.D12G190900 Gossypium hirsutum
Gorai.003G109300 Gossypium raimondii
Gorai.005G153700 Gossypium raimondii
Gorai.006G270400 Gossypium raimondii
Gorai.008G204800 Gossypium raimondii
GSVIVG01007538001 Vitis vinifera
HanXRQChr09g0272871 Helianthus annuus
HanXRQChr16g0497921 Helianthus annuus
Haze_07275 Corylus avellana
Haze_26412 Corylus avellana
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla
HPP92_024646 Vanilla planifolia
HPP92_024650 Vanilla planifolia
Hund05648 Selenicereus undatus
Lalb_Chr07g0183231 Lupinus albus
Lalb_Chr08g0236971 Lupinus albus
Lalb_Chr23g0273491 Lupinus albus
Lj4g0007668 Lotus japonicus
Lj5A100G57 Lonicera japonica
Lj5g0004669 Lotus japonicus
Lj9A475T64 Lonicera japonica
Lsat_1_v5_gn_1_109521 Lactuca sativa
Lsat_1_v5_gn_3_86540 Lactuca sativa
Lsat_1_v5_gn_4_20521 Lactuca sativa
Lsat_1_v5_gn_4_21520 Lactuca sativa
Lsat_1_v5_gn_4_78821 Lactuca sativa
Lsat_1_v5_gn_7_56200 Lactuca sativa
Manes.06G115400 Manihot esculenta
Manes.14G055233 Manihot esculenta
Mapoly0014s0216 Marchantia polymorpha
MBI06_g05239_MAGBIO Magnolia biondii
MBI06_g43853_MAGBIO Magnolia biondii
MBI11_g19363_MAGBIO Magnolia biondii
MCO04G155 Micromonas commoda
MD06G1151500 Malus domestica
MD06G1156100 Malus domestica
MD14G1163300 Malus domestica
Medtr4g104080 Medicago truncatula
Medtr8g046560 Medicago truncatula
Medtr8g464820 Medicago truncatula
MELO3C002335.2 Cucumis melo
Migut.I00477 Erythranthe guttata
MSTRG.22924 Avicennia marina
MSTRG.4587 Avicennia marina
Nitab4.5_0000366g0070 Nicotiana tabacum
Nitab4.5_0006219g0010 Nicotiana tabacum
Nn3g16577 Nelumbo nucifera
Nn4g22458 Nelumbo nucifera
Oeu011575.1 Olea europaea
Oeu033323.1 Olea europaea
Oeu058314.2 Olea europaea
Os01g0974900 Oryza sativa ssp. japonica
Os02g0600100 Oryza sativa ssp. japonica
Os04g0485000 Oryza sativa ssp. japonica
Peaxi162Scf00324g00334 Petunia axillaris
PGR083G1499 Punica granatum
PGSC0003DMG401024210 Solanum tuberosum
PGSC0003DMG402024210 Solanum tuberosum
Phvul.003G208200 Phaseolus vulgaris
Potri.012G093500 Populus trichocarpa
Potri.015G090900 Populus trichocarpa
Pp3c10_7470 Physcomitrium patens
Pp3c12_14600 Physcomitrium patens
Pp3c4_2100 Physcomitrium patens
PRCOL_00002590 Prasinoderma coloniale
Prupe.5G156700 Prunus persica
Psat0s5008g0040 Pisum sativum
Psat4g064960 Pisum sativum
PSO063G7046 Papaver somniferum
PSO170G4862 Papaver somniferum
PSO445G0024 Papaver somniferum
PSO782G0707 Papaver somniferum
QL05p040991 Quercus lobata
QL05p041001 Quercus lobata
QL10p005029 Quercus lobata
QL10p005036 Quercus lobata
RcHm_v2.0_Chr5g0017921 Rosa chinensis
RcHm_v2.0_Chr5g0044171 Rosa chinensis
RcHm_v2.0_Chr5g0065961 Rosa chinensis
RcHm_v2.0_Chr7g0191031 Rosa chinensis
RcHm_v2.0_Chr7g0191041 Rosa chinensis
RcHm_v2.0_Chr7g0191061 Rosa chinensis
Rhsim08G0185100 Rhododendron simsii
Sabra15G0113000 Salix brachista
SalBow5G2462 Salvia bowleyana
Sc04g0000950 Simmondsia chinensis
Sed0014675 Sechium edule
Sed0024107 Sechium edule
SEGI_06373 Sequoiadendron giganteum
SEGI_11838 Sequoiadendron giganteum
SEGI_29907 Sequoiadendron giganteum
SEGI_32179 Sequoiadendron giganteum
SGA_v2.0_scaffold350G49637 Striga asiatica
SHI33980 Sapria himalayana
SMO118G0024 Selaginella moellendorffii
Solyc07g009140.3 Solanum lycopersicum
Sopen07g017130 Solanum pennellii
Sp4g14070 Schrenkiella parvula
Sp7g22810 Schrenkiella parvula
TAR371G1119 Trochodendron aralioides
TAR626G0734 Trochodendron aralioides
THA.LOC104811603 Tarenaya hassleriana
THA.LOC104825005 Tarenaya hassleriana
Thecc.03G123100 Theobroma cacao
Thhalv10025431m.g Eutrema salsugineum
TPR.G16844 Trifolium pratense
TPR.G37528 Trifolium pratense
TWI14G1333 Tripterygium wilfordii
TWI39G0859 Tripterygium wilfordii
unitig_747.g21330 Utricularia gibba
vmacro01936 Vaccinium macrocarpon
vmacro19238 Vaccinium macrocarpon
VMungo1215G0589 Vigna mungo
Zm00001eb079270 Zea mays
Zm00001eb246330 Zea mays

User provided reference genes

Program Settings