Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02440 Brassica napus
A07p24270 Brassica napus
A09p51190 Brassica napus
A09p67020 Brassica napus
Aa31LG10G13240 Aethionema arabicum
Aa31LG1G7410 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5213 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5029 Anthoceros agrestis
Actinidia07542 Actinidia chinensis
Ah.07g200220 Amaranthus hybridus
AL1G16390 Arabidopsis lyrata
AL4G41200 Arabidopsis lyrata
AL5G40420 Arabidopsis lyrata
Aqoxy1G01873 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.F05RU1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TQ3KHU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W45CJY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y8GTCM Arachis hypogaea
AT1G06380 Arabidopsis thaliana
AT2G42650 Arabidopsis thaliana
AT3G58660 Arabidopsis thaliana
ATR1120G065 Amborella trichopoda
Atru.chr6.2098 Acer truncatum
Atru.chr6.2099 Acer truncatum
AUR62002377 Chenopodium quinoa
AUR62023808 Chenopodium quinoa
BcaB02g07507 Brassica carinata
BcaB02g08243 Brassica carinata
BcaB02g08249 Brassica carinata
BcaB02g08250 Brassica carinata
BcaC07g40214 Brassica carinata
BcaC07g42068 Brassica carinata
BcaC07g42069 Brassica carinata
BcaC08g44934 Brassica carinata
BolC4t24951H Brassica oleracea
BolC6t37725H Brassica oleracea
BolC8t50997H Brassica oleracea
BolC8t52654H Brassica oleracea
BraA04t15974Z Brassica rapa
BraA07t30070Z Brassica rapa
BraA09t40563Z Brassica rapa
BraA09t42036Z Brassica rapa
C04p33840 Brassica napus
C06p25620 Brassica napus
C08p33990 Brassica napus
C08p51280 Brassica napus
CAN.G419.14 Capsicum annuum
CAN.G588.61 Capsicum annuum
CAN.G659.12 Capsicum annuum
CANSAT25G3562 Cannabis sativa
CARHR005990 Cardamine hirsuta
CARHR169060 Cardamine hirsuta
Carub.0001s0573 Capsella rubella
Carub.0004s2509 Capsella rubella
Carub.0005s2545 Capsella rubella
Ca_03696_v3 Cicer arietinum L.
Ca_03701_v3 Cicer arietinum L.
CBR_g22367 Chara braunii
Cc05_g09390 Coffea canephora
Cc11_g03980 Coffea canephora
CDE02G0771 Ceratophyllum demersum
CDE02G3643 Ceratophyllum demersum
CDE11G0203 Ceratophyllum demersum
Cfa002342 Carpinus fangiana
Cfa027334 Carpinus fangiana
Ciclev10031604m.g Citrus clementina
CiPaw.05G219600 Carya illinoinensis
ClCG01G002830 Citrullus lanatus
COL.COLO4_35816 Corchorus olitorius
Cpa.g.sc142.48 Carica papaya
Cre07.g314100 Chlamydomonas reinhardtii
CsaV3_5G002920 Cucumis sativus L.
CSS0046050 Camellia sinensis var. sinensis
DCAR_002618 Daucus carota
DCAR_003224 Daucus carota
DCAR_005751 Daucus carota
DCAR_022377 Daucus carota
Dinv02895 Davidia involucrata
Dinv06357 Davidia involucrata
Dinv06464 Davidia involucrata
Dinv43639 Davidia involucrata
Duzib147G0243 Durio zibethinus
Duzib264G0518 Durio zibethinus
ECA232G2030 Erigeron canadensis
EL10Ac3g06064 Beta vulgaris
Eucgr.K01212 Eucalyptus grandis
FAN02G3827 Fragaria x ananassa
FAN05G1279 Fragaria x ananassa
FAN07G1030 Fragaria x ananassa
FAN09G0652 Fragaria x ananassa
FAN12G0502 Fragaria x ananassa
FAN12G1252 Fragaria x ananassa
FAN14G0598 Fragaria x ananassa
FAN17G0804 Fragaria x ananassa
FAN22G1678 Fragaria x ananassa
FvH4_4g16980 Fragaria vesca
FvH4_6g38200 Fragaria vesca
Glyma.08G173300 Glycine max
Glyma.15G254100 Glycine max
Gohir.A09G005700 Gossypium hirsutum
Gohir.D09G004900 Gossypium hirsutum
Gorai.006G006500 Gossypium raimondii
GSVIVG01000789001 Vitis vinifera
HanXRQChr04g0126231 Helianthus annuus
HanXRQChr15g0487351 Helianthus annuus
Haze_24553 Corylus avellana
Hma1.2p1_1566F.1_g291040 Hydrangea macrophylla
HPP92_002958 Vanilla planifolia
HPP92_024518 Vanilla planifolia
HPP92_024590 Vanilla planifolia
Lalb_Chr01g0015961 Lupinus albus
Lalb_Chr25g0285161 Lupinus albus
Lj1g0006422 Lotus japonicus
Lj3A844T52 Lonicera japonica
Lj9P638T61 Lonicera japonica
Lsat_1_v5_gn_7_34760 Lactuca sativa
Lsat_1_v5_gn_8_87681 Lactuca sativa
Lsat_1_v5_gn_9_42400 Lactuca sativa
Manes.01G152900 Manihot esculenta
Manes.02G111600 Manihot esculenta
Mapoly0014s0101 Marchantia polymorpha
MBI10_g05860_MAGBIO Magnolia biondii
MBI10_g05861_MAGBIO Magnolia biondii
MBI16_g10342_MAGBIO Magnolia biondii
MCO04G407 Micromonas commoda
MD09G1152200 Malus domestica
MD17G1139700 Malus domestica
Medtr2g064460 Medicago truncatula
MELO3C005664.2 Cucumis melo
Migut.B00761 Erythranthe guttata
Migut.E00591 Erythranthe guttata
MSTRG.2085 Avicennia marina
MSTRG.6749 Avicennia marina
Nitab4.5_0000477g0060 Nicotiana tabacum
Nitab4.5_0000526g0030 Nicotiana tabacum
Nitab4.5_0000874g0080 Nicotiana tabacum
Nitab4.5_0002392g0090 Nicotiana tabacum
Nitab4.5_0002707g0060 Nicotiana tabacum
Nitab4.5_0007445g0070 Nicotiana tabacum
Nitab4.5_0007445g0090 Nicotiana tabacum
Nn6g34650 Nelumbo nucifera
Oeu001178.1 Olea europaea
Oeu006324.1 Olea europaea
Oeu012292.1 Olea europaea
Oeu021285.1 Olea europaea
Os05g0558000 Oryza sativa ssp. japonica
Peaxi162Scf00329g00024 Petunia axillaris
Peaxi162Scf00818g00014 Petunia axillaris
PGR142G3243 Punica granatum
PGSC0003DMG400025296 Solanum tuberosum
PGSC0003DMG402006195 Solanum tuberosum
Phvul.005G055500 Phaseolus vulgaris
Potri.012G145000 Populus trichocarpa
Potri.015G147700 Populus trichocarpa
Pp3c12_11430 Physcomitrium patens
Pp3c8_1610 Physcomitrium patens
PRCOL_00002093 Prasinoderma coloniale
Prupe.3G172300 Prunus persica
Prupe.5G091000 Prunus persica
Psat1g002480 Pisum sativum
PSO210G5485 Papaver somniferum
PSO210G5498 Papaver somniferum
PSO675G7389 Papaver somniferum
QL07p041306 Quercus lobata
QL08p044068 Quercus lobata
RcHm_v2.0_Chr2g0151461 Rosa chinensis
RcHm_v2.0_Chr4g0420651 Rosa chinensis
Rhsim01G0116600 Rhododendron simsii
Sabra12G0108900 Salix brachista
Sabra15G0156600 Salix brachista
Sabra16G0322700 Salix brachista
SalBow2G2904 Salvia bowleyana
SalBow5G5064 Salvia bowleyana
SalBow5G5692 Salvia bowleyana
Sc25g0002770 Simmondsia chinensis
Sed0004728 Sechium edule
Sed0011514 Sechium edule
SEGI_04360 Sequoiadendron giganteum
SEGI_08503 Sequoiadendron giganteum
SEGI_11975 Sequoiadendron giganteum
SGA_v2.0_scaffold130G34363 Striga asiatica
SGA_v2.0_scaffold70G23663 Striga asiatica
SHI08840 Sapria himalayana
SMO358G0690 Selaginella moellendorffii
Solyc01g111420.3 Solanum lycopersicum
Solyc04g008790.1 Solanum lycopersicum
Sopen01g053480 Solanum pennellii
Sopen04g003970 Solanum pennellii
Sp1g05150 Schrenkiella parvula
Sp4g24790 Schrenkiella parvula
Sp5g04190 Schrenkiella parvula
TAR624G0697 Trochodendron aralioides
TAR626G1806 Trochodendron aralioides
TAR626G1900 Trochodendron aralioides
TAR627G0791 Trochodendron aralioides
THA.LOC104800837 Tarenaya hassleriana
THA.LOC104802952 Tarenaya hassleriana
THA.LOC104823772 Tarenaya hassleriana
Thecc.01G137500 Theobroma cacao
Thhalv10006007m.g Eutrema salsugineum
Thhalv10008540m.g Eutrema salsugineum
Thhalv10016795m.g Eutrema salsugineum
Thhalv10024102m.g Eutrema salsugineum
TPR.G9761 Trifolium pratense
TWI14G1135 Tripterygium wilfordii
TWI59G0895 Tripterygium wilfordii
unitig_699.g19645 Utricularia gibba
unitig_85.g27390 Utricularia gibba
vmacro20812 Vaccinium macrocarpon
VMungo1080G0680 Vigna mungo
Zm00001eb035410 Zea mays
Zm00001eb295520 Zea mays
Zm00001eb343350 Zea mays

User provided reference genes

Program Settings