Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p32400 Brassica napus
Aa31LG1G16470 Aethionema arabicum
Actinidia28466 Actinidia chinensis
Ah.03g139830 Amaranthus hybridus
Ah.15g091280 Amaranthus hybridus
AL2G37540 Arabidopsis lyrata
AL3G14030 Arabidopsis lyrata
AL7G34260 Arabidopsis lyrata
AL8G43160 Arabidopsis lyrata
AL8G43390 Arabidopsis lyrata
Aqoxy4G02220 Aquilegia oxysepala
Aqoxy6G00832 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea
AT1G77340 Arabidopsis thaliana
AT5G65560 Arabidopsis thaliana
ATR0665G178 Amborella trichopoda
ATR0712G112 Amborella trichopoda
Atru.chr4.1465 Acer truncatum
Atru.chr6.3361 Acer truncatum
AUR62015034 Chenopodium quinoa
AUR62017491 Chenopodium quinoa
AUR62027713 Chenopodium quinoa
AUR62039467 Chenopodium quinoa
BcaC01g02795 Brassica carinata
BcaC01g02798 Brassica carinata
BolC3t18283H Brassica oleracea
BolC3t18286H Brassica oleracea
BolC3t18304H Brassica oleracea
BraA06t26165Z Brassica rapa
C03p60210 Brassica napus
C03p60250 Brassica napus
C03p60430 Brassica napus
CAN.G1397.6 Capsicum annuum
CAN.G674.2 Capsicum annuum
CANSAT01G1059 Cannabis sativa
CARHR279540 Cardamine hirsuta
Carub.0002s2422 Capsella rubella
Carub.0008s2641 Capsella rubella
Ca_25227_v3 Cicer arietinum L.
Cc03_g12590 Coffea canephora
Cc04_g11530 Coffea canephora
CDE02G0711 Ceratophyllum demersum
CDE02G4398 Ceratophyllum demersum
CDE04G0945 Ceratophyllum demersum
Cfa012658 Carpinus fangiana
Ciclev10014182m.g Citrus clementina
Ciclev10018770m.g Citrus clementina
CiPaw.08G142200 Carya illinoinensis
CiPaw.12G072400 Carya illinoinensis
ClCG02G002730 Citrullus lanatus
ClCG08G009320 Citrullus lanatus
COL.COLO4_08492 Corchorus olitorius
COL.COLO4_27373 Corchorus olitorius
Cpa.g.sc10.84 Carica papaya
Cpa.g.sc17.172 Carica papaya
CsaV3_6G031450 Cucumis sativus L.
CsaV3_7G021590 Cucumis sativus L.
CsaV3_7G023730 Cucumis sativus L.
CSS0000965 Camellia sinensis var. sinensis
CSS0019582 Camellia sinensis var. sinensis
CSS0039883 Camellia sinensis var. sinensis
DCAR_012908 Daucus carota
DCAR_012925 Daucus carota
Dinv24763 Davidia involucrata
Dinv24770 Davidia involucrata
Dinv33235 Davidia involucrata
Dinv34734 Davidia involucrata
Duzib264G1117 Durio zibethinus
ECA236G0103 Erigeron canadensis
ECA240G1833 Erigeron canadensis
EL10Ac6g15188 Beta vulgaris
Eucgr.H02438 Eucalyptus grandis
Eucgr.K00651 Eucalyptus grandis
FAN02G2842 Fragaria x ananassa
FAN03G0748 Fragaria x ananassa
FAN05G1838 Fragaria x ananassa
FAN09G1124 Fragaria x ananassa
FAN14G2019 Fragaria x ananassa
FAN19G0968 Fragaria x ananassa
FAN20G1808 Fragaria x ananassa
FAN23G1801 Fragaria x ananassa
FAN24G1052 Fragaria x ananassa
FAN26G1074 Fragaria x ananassa
FAN28G0230 Fragaria x ananassa
FvH4_1g06430 Fragaria vesca
FvH4_2g11090 Fragaria vesca
FvH4_6g41080 Fragaria vesca
FvH4_7g04271 Fragaria vesca
Glyma.01G021450 Glycine max
Glyma.09G200200 Glycine max
Gohir.A12G085200 Gossypium hirsutum
Gohir.D12G079600 Gossypium hirsutum
Gorai.008G093300 Gossypium raimondii
GSVIVG01030055001 Vitis vinifera
GSVIVG01038280001 Vitis vinifera
HanXRQChr03g0075201 Helianthus annuus
HanXRQChr04g0122161 Helianthus annuus
HanXRQChr06g0169331 Helianthus annuus
HanXRQChr13g0389381 Helianthus annuus
Haze_03893 Corylus avellana
Haze_07989 Corylus avellana
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla
HPP92_001177 Vanilla planifolia
HPP92_001965 Vanilla planifolia
HPP92_009567 Vanilla planifolia
HPP92_017252 Vanilla planifolia
Hund03005 Selenicereus undatus
Lalb_Chr03g0042211 Lupinus albus
Lalb_Chr09g0325941 Lupinus albus
Lalb_Chr19g0125341 Lupinus albus
Lj1P792T34 Lonicera japonica
Lj2g0010731 Lotus japonicus
Lj3C22T6 Lonicera japonica
Lsat_1_v5_gn_7_6901 Lactuca sativa
Lsat_1_v5_gn_9_104601 Lactuca sativa
Manes.12G061200 Manihot esculenta
Manes.12G124600 Manihot esculenta
MBI16_g31256_MAGBIO Magnolia biondii
MBI19_g25583_MAGBIO Magnolia biondii
MD03G1170600 Malus domestica
MD08G1245900 Malus domestica
MD09G1122300 Malus domestica
MD09G1219900 Malus domestica
MD11G1188000 Malus domestica
MD15G1441200 Malus domestica
Medtr5g031740 Medicago truncatula
MELO3C013188.2 Cucumis melo
MELO3C024111.2 Cucumis melo
MELO3C026530.2 Cucumis melo
Migut.H02282 Erythranthe guttata
Migut.M00034 Erythranthe guttata
MSTRG.6643 Avicennia marina
Nitab4.5_0000441g0020 Nicotiana tabacum
Nitab4.5_0000574g0030 Nicotiana tabacum
Nitab4.5_0002165g0010 Nicotiana tabacum
Nitab4.5_0002364g0030 Nicotiana tabacum
Nitab4.5_0005257g0020 Nicotiana tabacum
Nitab4.5_0011940g0010 Nicotiana tabacum
Nn1g03235 Nelumbo nucifera
Oeu040066.1 Olea europaea
Oeu040467.2 Olea europaea
Os02g0582300 Oryza sativa ssp. japonica
Os06g0690900 Oryza sativa ssp. japonica
Os08g0300700 Oryza sativa ssp. japonica
Peaxi162Scf00370g00062 Petunia axillaris
Peaxi162Scf00776g00227 Petunia axillaris
PGR102G2337 Punica granatum
PGR142G4479 Punica granatum
PGSC0003DMG400006128 Solanum tuberosum
PGSC0003DMG400012917 Solanum tuberosum
PGSC0003DMG400023572 Solanum tuberosum
PGSC0003DMG401028232 Solanum tuberosum
Phvul.002G145400 Phaseolus vulgaris
Phvul.008G101600 Phaseolus vulgaris
Potri.006G124900 Populus trichocarpa
Prupe.1G583300 Prunus persica
Prupe.3G201200 Prunus persica
Prupe.4G256300 Prunus persica
Psat3g169880 Pisum sativum
PSO541G2059 Papaver somniferum
PSO541G3269 Papaver somniferum
PSO675G6229 Papaver somniferum
QL04p021900 Quercus lobata
QL12p037893 Quercus lobata
RcHm_v2.0_Chr1g0329241 Rosa chinensis
RcHm_v2.0_Chr2g0092171 Rosa chinensis
RcHm_v2.0_Chr2g0156641 Rosa chinensis
Rhsim05G0168300 Rhododendron simsii
Rhsim06G0174500 Rhododendron simsii
Sabra06G0098600 Salix brachista
SalBow3G1735 Salvia bowleyana
SalBow7G0399 Salvia bowleyana
Sc06g0009870 Simmondsia chinensis
Sc16g0000610 Simmondsia chinensis
Sed0013166 Sechium edule
Sed0026111 Sechium edule
SEGI_11288 Sequoiadendron giganteum
SEGI_31076 Sequoiadendron giganteum
SGA_v2.0_scaffold181G39678 Striga asiatica
SGA_v2.0_scaffold181G39736 Striga asiatica
SHI10143 Sapria himalayana
SHI21874 Sapria himalayana
Solyc07g047820.3 Solanum lycopersicum
Solyc10g081880.3 Solanum lycopersicum
Sopen07g024250 Solanum pennellii
Sopen10g032390 Solanum pennellii
Sp2g28660 Schrenkiella parvula
TAR381G0732 Trochodendron aralioides
TAR625G1193 Trochodendron aralioides
TAR629G0622 Trochodendron aralioides
THA.LOC104798889 Tarenaya hassleriana
THA.LOC104808438 Tarenaya hassleriana
THA.LOC104819041 Tarenaya hassleriana
Thecc.01G088700 Theobroma cacao
Thecc.01G191200 Theobroma cacao
Thhalv10005373m.g Eutrema salsugineum
TPR.G36733 Trifolium pratense
TWI18G1117 Tripterygium wilfordii
TWI53G0425 Tripterygium wilfordii
TWI74G0121 Tripterygium wilfordii
unitig_748.g8367 Utricularia gibba
vmacro12101 Vaccinium macrocarpon
vmacro18279 Vaccinium macrocarpon
VMungo1215G2034 Vigna mungo
VMungo1383G3073 Vigna mungo
Zm00001eb037970 Zea mays
Zm00001eb118490 Zea mays
Zm00001eb118600 Zea mays
Zm00001eb164240 Zea mays
Zm00001eb183350 Zea mays

User provided reference genes

Program Settings