Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p58720 Brassica napus
Aa31LG3G10280 Aethionema arabicum
Aa31LG8G17670 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3418 Anthoceros agrestis
Actinidia25642 Actinidia chinensis
Ah.01g005240 Amaranthus hybridus
AL3G53980 Arabidopsis lyrata
Aqoxy1G02766 Aquilegia oxysepala
Aqoxy4G01378 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1GCN3K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CI4P3J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JDAI9R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7CY27 Arachis hypogaea
AT2G20820 Arabidopsis thaliana
ATR0693G130 Amborella trichopoda
Atru.chr2.2830 Acer truncatum
Atru.chr6.3059 Acer truncatum
AUR62029321 Chenopodium quinoa
AUR62037379 Chenopodium quinoa
AUR62038939 Chenopodium quinoa
BcaB03g16871 Brassica carinata
BcaB08g34940 Brassica carinata
BcaC06g36771 Brassica carinata
BcaC07g41195 Brassica carinata
BolC7t40462H Brassica oleracea
BolC8t51764H Brassica oleracea
BraA07t27787Z Brassica rapa
BraA09t41258Z Brassica rapa
C07p00110 Brassica napus
C08p42020 Brassica napus
CAN.G162.100 Capsicum annuum
CAN.G980.14 Capsicum annuum
CANSAT11G0321 Cannabis sativa
CANSAT64G1365 Cannabis sativa
CARHR111520 Cardamine hirsuta
Carub.0003s3544 Capsella rubella
Ca_01808_v3 Cicer arietinum L.
Ca_20696_v3 Cicer arietinum L.
Ca_29613_v3 Cicer arietinum L.
CBR_g38679 Chara braunii
Cc05_g06450 Coffea canephora
CDE02G3935 Ceratophyllum demersum
CDE05G0499 Ceratophyllum demersum
Cfa020515 Carpinus fangiana
Ciclev10009993m.g Citrus clementina
Ciclev10017293m.g Citrus clementina
CiPaw.03G170500 Carya illinoinensis
CiPaw.11G175600 Carya illinoinensis
ClCG02G017380 Citrullus lanatus
ClCG10G006560 Citrullus lanatus
COL.COLO4_09470 Corchorus olitorius
COL.COLO4_13688 Corchorus olitorius
Cpa.g.sc34.107 Carica papaya
Cpa.g.sc80.107 Carica papaya
CsaV3_3G006010 Cucumis sativus L.
CsaV3_6G012490 Cucumis sativus L.
CSS0003970 Camellia sinensis var. sinensis
CSS0004412 Camellia sinensis var. sinensis
CSS0012114 Camellia sinensis var. sinensis
CSS0019981 Camellia sinensis var. sinensis
CSS0034885 Camellia sinensis var. sinensis
CSS0043148 Camellia sinensis var. sinensis
CSS0047882 Camellia sinensis var. sinensis
DCAR_021228 Daucus carota
Dinv08336 Davidia involucrata
Dinv15477 Davidia involucrata
Duzib052G1248 Durio zibethinus
Duzib213G0067 Durio zibethinus
Duzib248G0651 Durio zibethinus
EL10Ac4g08078 Beta vulgaris
EL10Ac9g20680 Beta vulgaris
Eucgr.F01083 Eucalyptus grandis
Eucgr.K00930 Eucalyptus grandis
FAN02G3322 Fragaria x ananassa
FAN05G4492 Fragaria x ananassa
FAN09G2723 Fragaria x ananassa
FAN11G0582 Fragaria x ananassa
FAN14G3755 Fragaria x ananassa
FvH4_3g20863 Fragaria vesca
FvH4_6g44830 Fragaria vesca
Glyma.06G297500 Glycine max
Glyma.12G107500 Glycine max
Gohir.A03G159800 Gossypium hirsutum
Gohir.A04G105400 Gossypium hirsutum
Gohir.A13G056800 Gossypium hirsutum
Gohir.D02G182900 Gossypium hirsutum
Gohir.D04G145200 Gossypium hirsutum
Gohir.D13G065100 Gossypium hirsutum
Gorai.005G205300 Gossypium raimondii
Gorai.012G131200 Gossypium raimondii
Gorai.013G074000 Gossypium raimondii
GSVIVG01014423001 Vitis vinifera
GSVIVG01030577001 Vitis vinifera
HanXRQChr15g0480351 Helianthus annuus
HanXRQChr17g0542051 Helianthus annuus
Haze_09519 Corylus avellana
Haze_13097 Corylus avellana
Hma1.2p1_0565F.1_g179410 Hydrangea macrophylla
HPP92_013243 Vanilla planifolia
HPP92_013256 Vanilla planifolia
Hund01256 Selenicereus undatus
Hund28423 Selenicereus undatus
Hund28428 Selenicereus undatus
Lalb_Chr01g0005411 Lupinus albus
Lalb_Chr19g0135441 Lupinus albus
Lalb_Chr20g0109981 Lupinus albus
Lalb_Chr25g0286681 Lupinus albus
Lj3g0002612 Lotus japonicus
Lsat_1_v5_gn_3_39520 Lactuca sativa
Lsat_1_v5_gn_4_70380 Lactuca sativa
Lsat_1_v5_gn_8_131761 Lactuca sativa
Manes.03G116100 Manihot esculenta
Manes.13G151100 Manihot esculenta
Manes.15G083600 Manihot esculenta
Mapoly0084s0043 Marchantia polymorpha
Mapoly0116s0030 Marchantia polymorpha
MBI18_g11114_MAGBIO Magnolia biondii
MCO05G459 Micromonas commoda
MD09G1092800 Malus domestica
MD11G1238000 Malus domestica
MD17G1082800 Malus domestica
Medtr2g080270 Medicago truncatula
Medtr4g046033 Medicago truncatula
MELO3C013527.2 Cucumis melo
MELO3C032196.2 Cucumis melo
Migut.H01025 Erythranthe guttata
Migut.M00873 Erythranthe guttata
MSTRG.14185 Avicennia marina
MSTRG.6851 Avicennia marina
Nitab4.5_0000297g0090 Nicotiana tabacum
Nitab4.5_0000662g0030 Nicotiana tabacum
Nitab4.5_0001090g0040 Nicotiana tabacum
Nitab4.5_0002565g0010 Nicotiana tabacum
Nitab4.5_0003018g0030 Nicotiana tabacum
Nitab4.5_0004216g0050 Nicotiana tabacum
Nitab4.5_0005141g0020 Nicotiana tabacum
Nitab4.5_0005244g0020 Nicotiana tabacum
Nn1g03922 Nelumbo nucifera
Nn1g06736 Nelumbo nucifera
Oeu000580.1 Olea europaea
Oeu005435.1 Olea europaea
Oeu025509.1 Olea europaea
Oeu041222.2 Olea europaea
Oeu058401.1 Olea europaea
Oeu058402.1 Olea europaea
Os03g0581800 Oryza sativa ssp. japonica
Peaxi162Scf00000g00507 Petunia axillaris
Peaxi162Scf00485g00410 Petunia axillaris
PGR142G1106 Punica granatum
PGSC0003DMG400008567 Solanum tuberosum
PGSC0003DMG400013747 Solanum tuberosum
PGSC0003DMG400019250 Solanum tuberosum
Phvul.011G112050 Phaseolus vulgaris
Potri.013G146000 Populus trichocarpa
Potri.019G109100 Populus trichocarpa
Pp3c5_18840 Physcomitrium patens
Pp3c6_9540 Physcomitrium patens
PRCOL_00001582 Prasinoderma coloniale
Prupe.3G232400 Prunus persica
Prupe.4G189100 Prunus persica
Psat7g197240 Pisum sativum
PSO017G6255 Papaver somniferum
PSO210G2445 Papaver somniferum
PSO210G7399 Papaver somniferum
PSO421G0320 Papaver somniferum
PSO675G5140 Papaver somniferum
QL08p018701 Quercus lobata
QL10p048414 Quercus lobata
QL93p2023_0086 Quercus lobata
RcHm_v2.0_Chr2g0162011 Rosa chinensis
RcHm_v2.0_Chr5g0035221 Rosa chinensis
Rhsim04G0018100 Rhododendron simsii
Rhsim04G0065800 Rhododendron simsii
Rhsim09G0151800 Rhododendron simsii
Sabra13G0117600 Salix brachista
Sabra19G0115200 Salix brachista
Sabra19G0138200 Salix brachista
SalBow1G3847 Salvia bowleyana
Sc07g0002700 Simmondsia chinensis
Sc16g0005530 Simmondsia chinensis
Sed0003278 Sechium edule
Sed0012891 Sechium edule
SEGI_35776 Sequoiadendron giganteum
SGA_v2.0_scaffold159G37630 Striga asiatica
SGA_v2.0_scaffold34G13717 Striga asiatica
SHI21669 Sapria himalayana
Solyc07g063540.3 Solanum lycopersicum
Solyc12g005570.2 Solanum lycopersicum
Solyc12g013550.2 Solanum lycopersicum
Sopen07g031720 Solanum pennellii
Sopen12g001520 Solanum pennellii
Sopen12g006900 Solanum pennellii
Sp3g34050 Schrenkiella parvula
Sp7g26150 Schrenkiella parvula
TAR597G0001 Trochodendron aralioides
TAR624G0491 Trochodendron aralioides
TAR629G1513 Trochodendron aralioides
THA.LOC104804064 Tarenaya hassleriana
THA.LOC109117137 Tarenaya hassleriana
Thecc.02G172700 Theobroma cacao
Thecc.07G072700 Theobroma cacao
Thhalv10002120m.g Eutrema salsugineum
TPR.G32877 Trifolium pratense
TPR.G34957 Trifolium pratense
TWI18G0519 Tripterygium wilfordii
TWI36G0346 Tripterygium wilfordii
TWI39G0955 Tripterygium wilfordii
unitig_0.g2050 Utricularia gibba
unitig_747.g21564 Utricularia gibba
vmacro09266 Vaccinium macrocarpon
VMungo1127G2162 Vigna mungo
Zm00001eb049100 Zea mays
Zm00001eb219570 Zea mays

User provided reference genes

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