Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12040 Brassica napus
Aa31LG6G2740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis
Actinidia16221 Actinidia chinensis
Actinidia29333 Actinidia chinensis
AL7G33540 Arabidopsis lyrata
AL7G33570 Arabidopsis lyrata
Aqoxy5G03624 Aquilegia oxysepala
Aqoxy7G00979 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea
AT4G20325 Arabidopsis thaliana
AT4G20350 Arabidopsis thaliana
ATR0068G091 Amborella trichopoda
ATR0686G110 Amborella trichopoda
ATR0798G001 Amborella trichopoda
Atru.BG.264.p Acer truncatum
Atru.chr2.209 Acer truncatum
AUR62000916 Chenopodium quinoa
AUR62004842 Chenopodium quinoa
AUR62004843 Chenopodium quinoa
AUR62005054 Chenopodium quinoa
AUR62020698 Chenopodium quinoa
AUR62028026 Chenopodium quinoa
BcaC06g30651 Brassica carinata
BcaC09g51346 Brassica carinata
BcaNung03501 Brassica carinata
BraA01t01146Z Brassica rapa
BraA03t14319Z Brassica rapa
C01p14340 Brassica napus
CAN.G431.2 Capsicum annuum
CAN.G964.23 Capsicum annuum
CANSAT35G1729 Cannabis sativa
CANSAT54G1971 Cannabis sativa
CARHR227150 Cardamine hirsuta
CARHR227170 Cardamine hirsuta
Carub.0007s2082 Capsella rubella
Carub.0007s2085 Capsella rubella
Ca_25246_v3 Cicer arietinum L.
CBR_g23989 Chara braunii
CBR_g23991 Chara braunii
CBR_g45547 Chara braunii
Cc01_g05060 Coffea canephora
Cc11_g12550 Coffea canephora
CDE02G2127 Ceratophyllum demersum
CDE05G1961 Ceratophyllum demersum
Cfa002302 Carpinus fangiana
Cfa026017 Carpinus fangiana
Ciclev10016172m.g Citrus clementina
Ciclev10029320m.g Citrus clementina
CiPaw.03G255400 Carya illinoinensis
CiPaw.07G210300 Carya illinoinensis
ClCG01G015060 Citrullus lanatus
ClCG08G012570 Citrullus lanatus
COL.COLO4_10365 Corchorus olitorius
COL.COLO4_24749 Corchorus olitorius
Cpa.g.sc30.50 Carica papaya
Cpa.g.sc30.52 Carica papaya
Cre07.g320800 Chlamydomonas reinhardtii
Cre14.g632791 Chlamydomonas reinhardtii
CsaV3_2G031270 Cucumis sativus L.
CsaV3_6G041170 Cucumis sativus L.
CSS0009288 Camellia sinensis var. sinensis
CSS0031904 Camellia sinensis var. sinensis
CSS0050223 Camellia sinensis var. sinensis
DCAR_002183 Daucus carota
DCAR_028397 Daucus carota
Dinv15525 Davidia involucrata
Dinv37468 Davidia involucrata
Duzib084G1420 Durio zibethinus
Duzib093G2193 Durio zibethinus
ECA248G3933 Erigeron canadensis
EL10Ac4g09260 Beta vulgaris
EL10Ac8g19259 Beta vulgaris
Eucgr.E04307 Eucalyptus grandis
Eucgr.J01718 Eucalyptus grandis
FAN11G2508 Fragaria x ananassa
FAN11G4037 Fragaria x ananassa
FAN15G0760 Fragaria x ananassa
FAN21G2623 Fragaria x ananassa
FAN25G0659 Fragaria x ananassa
FAN25G1903 Fragaria x ananassa
FvH4_2g36540 Fragaria vesca
FvH4_3g46100 Fragaria vesca
Glyma.04G077000 Glycine max
Glyma.04G217700 Glycine max
Glyma.06G078200 Glycine max
Glyma.09G156400 Glycine max
Glyma.16G207100 Glycine max
Gohir.A09G117900 Gossypium hirsutum
Gohir.A12G202300 Gossypium hirsutum
Gohir.D09G114700 Gossypium hirsutum
Gohir.D12G205000 Gossypium hirsutum
Gorai.006G132500 Gossypium raimondii
Gorai.008G219900 Gossypium raimondii
GSVIVG01034815001 Vitis vinifera
GSVIVG01035604001 Vitis vinifera
HanXRQChr15g0468831 Helianthus annuus
HanXRQChr17g0555621 Helianthus annuus
Haze_24508 Corylus avellana
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla
HPP92_021155 Vanilla planifolia
HPP92_024271 Vanilla planifolia
Hund03239 Selenicereus undatus
Hund07019 Selenicereus undatus
Lalb_Chr01g0008671 Lupinus albus
Lalb_Chr11g0064231 Lupinus albus
Lj1A555G38 Lonicera japonica
Lj1g0010900 Lotus japonicus
Lj2g0011105 Lotus japonicus
Lsat_1_v5_gn_1_71340 Lactuca sativa
Lsat_1_v5_gn_5_73181 Lactuca sativa
Manes.02G219100 Manihot esculenta
Manes.18G121700 Manihot esculenta
Mapoly0007s0017 Marchantia polymorpha
Mapoly0037s0034 Marchantia polymorpha
MBI13_g36948_MAGBIO Magnolia biondii
MBI13_g39202_MAGBIO Magnolia biondii
MCO03G055 Micromonas commoda
MCO08G131 Micromonas commoda
MD08G1125300 Malus domestica
MD11G1000200 Malus domestica
MD15G1105100 Malus domestica
Medtr6g059320 Medicago truncatula
MELO3C011176.2 Cucumis melo
MELO3C024592.2 Cucumis melo
Migut.E00069 Erythranthe guttata
Migut.N00525 Erythranthe guttata
MSTRG.12815 Avicennia marina
Nitab4.5_0000075g0050 Nicotiana tabacum
Nitab4.5_0000391g0210 Nicotiana tabacum
Nitab4.5_0005125g0010 Nicotiana tabacum
Nitab4.5_0012553g0020 Nicotiana tabacum
Nn7g38306 Nelumbo nucifera
Os04g0476400 Oryza sativa ssp. japonica
Os10g0420000 Oryza sativa ssp. japonica
Peaxi162Scf00314g00636 Petunia axillaris
Peaxi162Scf01181g00210 Petunia axillaris
PGR042G2091 Punica granatum
PGR119G1272 Punica granatum
PGSC0003DMG400026601 Solanum tuberosum
PGSC0003DMG402028340 Solanum tuberosum
Phvul.004G131600 Phaseolus vulgaris
Phvul.009G102700 Phaseolus vulgaris
Phvul.009G102800 Phaseolus vulgaris
Phvul.009G103000 Phaseolus vulgaris
Potri.006G280600 Populus trichocarpa
Potri.006G281101 Populus trichocarpa
Potri.013G161600 Populus trichocarpa
Pp3c10_22770 Physcomitrium patens
Pp3c2_18510 Physcomitrium patens
PRCOL_00004174 Prasinoderma coloniale
PRCOL_00004726 Prasinoderma coloniale
Prupe.1G456900 Prunus persica
Prupe.6G000300 Prunus persica
Psat1g112800 Pisum sativum
Psat5g023760 Pisum sativum
PSO339G6265 Papaver somniferum
PSO384G0221 Papaver somniferum
PSO782G1293 Papaver somniferum
QL04p043008 Quercus lobata
QL12p025722 Quercus lobata
RcHm_v2.0_Chr5g0084171 Rosa chinensis
RcHm_v2.0_Chr6g0305311 Rosa chinensis
Rhsim07G0174100 Rhododendron simsii
Rhsim13G0235500 Rhododendron simsii
Sabra13G0129200 Salix brachista
SalBow3G4219 Salvia bowleyana
SalBow8G4280 Salvia bowleyana
Sc18g0002730 Simmondsia chinensis
Sc23g0004340 Simmondsia chinensis
Sed0008662 Sechium edule
Sed0017242 Sechium edule
SEGI_31075 Sequoiadendron giganteum
SEGI_35572 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33897 Striga asiatica
SGA_v2.0_scaffold45G16974 Striga asiatica
SGA_v2.0_scaffold6G03334 Striga asiatica
SHI31610 Sapria himalayana
SMO115G0061 Selaginella moellendorffii
SMO132G0004 Selaginella moellendorffii
SMO147G0005 Selaginella moellendorffii
Solyc01g057570.3 Solanum lycopersicum
Solyc05g012940.4 Solanum lycopersicum
Sopen01g019970 Solanum pennellii
Sopen01g022430 Solanum pennellii
Sopen05g007740 Solanum pennellii
Sp7g18670 Schrenkiella parvula
Sp7g18690 Schrenkiella parvula
TAR623G0449 Trochodendron aralioides
TAR636G2614 Trochodendron aralioides
THA.LOC104806236 Tarenaya hassleriana
THA.LOC104811993 Tarenaya hassleriana
Thecc.03G318200 Theobroma cacao
Thecc.05G124600 Theobroma cacao
Thhalv10025951m.g Eutrema salsugineum
Thhalv10026088m.g Eutrema salsugineum
TPR.G12326 Trifolium pratense
TPR.G12401 Trifolium pratense
TPR.G5800 Trifolium pratense
TWI18G0285 Tripterygium wilfordii
TWI34G1882 Tripterygium wilfordii
unitig_0.g1143 Utricularia gibba
unitig_32.g11042 Utricularia gibba
vmacro04280 Vaccinium macrocarpon
vmacro05085 Vaccinium macrocarpon
VMungo0464G1483 Vigna mungo
VMungo1309G0938 Vigna mungo
Zm00001eb047810 Zea mays
Zm00001eb079750 Zea mays

User provided reference genes

Program Settings