Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p35140 Brassica napus
A09p03290 Brassica napus
Aa31LG1G18700 Aethionema arabicum
Aa31LG2G5470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1446 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1902 Anthoceros agrestis
Actinidia05917 Actinidia chinensis
Actinidia36194 Actinidia chinensis
Actinidia36788 Actinidia chinensis
Ah.02g120420 Amaranthus hybridus
Ah.03g147440 Amaranthus hybridus
AL5G16270 Arabidopsis lyrata
AL8G40380 Arabidopsis lyrata
Aqoxy5G03579 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea
AT3G27160 Arabidopsis thaliana
AT5G63300 Arabidopsis thaliana
Atru.chr6.2549 Acer truncatum
Atru.chr6.2557 Acer truncatum
Atru.chr9.1013 Acer truncatum
AUR62001279 Chenopodium quinoa
AUR62003498 Chenopodium quinoa
AUR62017813 Chenopodium quinoa
AUR62025727 Chenopodium quinoa
BcaB04g19427 Brassica carinata
BcaB07g30185 Brassica carinata
BcaC03g17429 Brassica carinata
BcaC03g18193 Brassica carinata
BcaC04g23918 Brassica carinata
BolC2t11446H Brassica oleracea
BolC2t12315H Brassica oleracea
BolC9t53270H Brassica oleracea
BraA02t08519Z Brassica rapa
BraA09t35967Z Brassica rapa
C02p53770 Brassica napus
C02p62560 Brassica napus
C09p03490 Brassica napus
CAN.G1491.4 Capsicum annuum
CAN.G473.92 Capsicum annuum
CANSAT64G0211 Cannabis sativa
CARHR148360 Cardamine hirsuta
CARHR277140 Cardamine hirsuta
Carub.0005s0539 Capsella rubella
Carub.0008s2405 Capsella rubella
Ca_05564_v3 Cicer arietinum L.
Ca_14371_v3 Cicer arietinum L.
CBR_g8368 Chara braunii
Cc07_g00740 Coffea canephora
CDE12G0833 Ceratophyllum demersum
Cfa007237 Carpinus fangiana
Ciclev10016867m.g Citrus clementina
Ciclev10022507m.g Citrus clementina
CiPaw.03G054500 Carya illinoinensis
CiPaw.04G035900 Carya illinoinensis
CiPaw.04G036000 Carya illinoinensis
CiPaw.04G036100 Carya illinoinensis
CiPaw.12G035800 Carya illinoinensis
ClCG03G003500 Citrullus lanatus
ClCG05G013420 Citrullus lanatus
COL.COLO4_17189 Corchorus olitorius
Cpa.g.sc1017.1 Carica papaya
CsaV3_1G009300 Cucumis sativus L.
CsaV3_3G027140 Cucumis sativus L.
CSS0036982 Camellia sinensis var. sinensis
DCAR_002949 Daucus carota
DCAR_026209 Daucus carota
Dinv33347 Davidia involucrata
Dinv38468 Davidia involucrata
Duzib147G1480 Durio zibethinus
Duzib187G1506 Durio zibethinus
Duzib205G0007 Durio zibethinus
ECA238G3857 Erigeron canadensis
ECA246G3163 Erigeron canadensis
EL10Ac3g06205 Beta vulgaris
EL10Ac6g15370 Beta vulgaris
EL10Ac7g18075 Beta vulgaris
EL10Ac9g20876 Beta vulgaris
Eucgr.B00147 Eucalyptus grandis
Eucgr.I01653 Eucalyptus grandis
Eucgr.J02332 Eucalyptus grandis
Eucgr.L01336 Eucalyptus grandis
FAN02G1758 Fragaria x ananassa
FAN04G2235 Fragaria x ananassa
FAN05G2482 Fragaria x ananassa
FAN08G2398 Fragaria x ananassa
FAN14G1306 Fragaria x ananassa
FAN18G2541 Fragaria x ananassa
FvH4_5g07520 Fragaria vesca
FvH4_6g53290 Fragaria vesca
Glyma.05G044800 Glycine max
Glyma.05G077200 Glycine max
Glyma.17G181000 Glycine max
Glyma.19G071300 Glycine max
Glyma.19G090000 Glycine max
Gohir.A05G339100 Gossypium hirsutum
Gohir.A07G053400 Gossypium hirsutum
Gohir.A09G035300 Gossypium hirsutum
Gohir.D04G077600 Gossypium hirsutum
Gohir.D07G057800 Gossypium hirsutum
Gohir.D09G036100 Gossypium hirsutum
Gorai.001G061300 Gossypium raimondii
Gorai.006G041200 Gossypium raimondii
Gorai.012G087400 Gossypium raimondii
HanXRQChr05g0154721 Helianthus annuus
HanXRQChr07g0198271 Helianthus annuus
HanXRQChr14g0450701 Helianthus annuus
Haze_14863 Corylus avellana
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla
Hund05646 Selenicereus undatus
Lalb_Chr02g0157721 Lupinus albus
Lalb_Chr24g0403341 Lupinus albus
Lj1g0002355 Lotus japonicus
Lj2g0014633 Lotus japonicus
Lj4g0002784 Lotus japonicus
Lj5C100G11 Lonicera japonica
Lju41C52T19 Lonicera japonica
Lsat_1_v5_gn_2_94161 Lactuca sativa
Lsat_1_v5_gn_5_13260 Lactuca sativa
Manes.15G159800 Manihot esculenta
Manes.17G103700 Manihot esculenta
Mapoly0066s0099 Marchantia polymorpha
Mapoly0090s0063 Marchantia polymorpha
MBI11_g19368_MAGBIO Magnolia biondii
MCO05G682 Micromonas commoda
MD09G1012000 Malus domestica
MD17G1012600 Malus domestica
Medtr4g104210 Medicago truncatula
Medtr7g029325 Medicago truncatula
MELO3C002333.2 Cucumis melo
MELO3C014875.2 Cucumis melo
Migut.D01231 Erythranthe guttata
Migut.F00072 Erythranthe guttata
MSTRG.3260 Avicennia marina
MSTRG.4586 Avicennia marina
Nitab4.5_0000040g0380 Nicotiana tabacum
Nitab4.5_0002911g0010 Nicotiana tabacum
Nitab4.5_0005418g0050 Nicotiana tabacum
Nitab4.5_0007150g0070 Nicotiana tabacum
Nitab4.5_0010637g0020 Nicotiana tabacum
Nn1g07337 Nelumbo nucifera
Nn4g22460 Nelumbo nucifera
Oeu011754.1 Olea europaea
Oeu011963.1 Olea europaea
Oeu011964.1 Olea europaea
Oeu044613.1 Olea europaea
Os02g0189000 Oryza sativa ssp. japonica
Peaxi162Scf00089g00228 Petunia axillaris
Peaxi162Scf00420g00566 Petunia axillaris
Peaxi162Scf00881g00240 Petunia axillaris
PGR083G2021 Punica granatum
PGR083G2579 Punica granatum
PGR142G2189 Punica granatum
PGSC0003DMG400006976 Solanum tuberosum
PGSC0003DMG400015257 Solanum tuberosum
Phvul.001G094500 Phaseolus vulgaris
Phvul.004G054500 Phaseolus vulgaris
Potri.001G331600 Populus trichocarpa
Potri.012G092700 Populus trichocarpa
Pp3c10_22890 Physcomitrium patens
Pp3c20_22830 Physcomitrium patens
Pp3c23_14280 Physcomitrium patens
Pp3c24_1550 Physcomitrium patens
PRCOL_00002490 Prasinoderma coloniale
Prupe.3G305100 Prunus persica
Prupe.5G156900 Prunus persica
Psat3g169680 Pisum sativum
Psat4g062640 Pisum sativum
PSO063G5134 Papaver somniferum
PSO782G3015 Papaver somniferum
QL02p071628 Quercus lobata
QL10p005054 Quercus lobata
RcHm_v2.0_Chr2g0088911 Rosa chinensis
RcHm_v2.0_Chr2g0088961 Rosa chinensis
RcHm_v2.0_Chr2g0089001 Rosa chinensis
RcHm_v2.0_Chr2g0175441 Rosa chinensis
RcHm_v2.0_Chr7g0191151 Rosa chinensis
Sabra16G0212600 Salix brachista
SalBow1G6303 Salvia bowleyana
SalBow4G2736 Salvia bowleyana
Sc04g0000960 Simmondsia chinensis
Sc07g0004150 Simmondsia chinensis
Sed0000109 Sechium edule
Sed0014935 Sechium edule
SGA_v2.0_scaffold44G16909 Striga asiatica
SMO164G0053 Selaginella moellendorffii
Solyc02g068090.3 Solanum lycopersicum
Solyc03g110930.3 Solanum lycopersicum
Sopen02g017200 Solanum pennellii
Sopen03g030120 Solanum pennellii
Sp2g16270 Schrenkiella parvula
Sp2g26420 Schrenkiella parvula
TAR374G1096 Trochodendron aralioides
TAR622G0507 Trochodendron aralioides
TAR626G1428 Trochodendron aralioides
THA.LOC104823979 Tarenaya hassleriana
THA.LOC104825617 Tarenaya hassleriana
Thecc.03G122900 Theobroma cacao
Thecc.04G034700 Theobroma cacao
Thhalv10004988m.g Eutrema salsugineum
Thhalv10005605m.g Eutrema salsugineum
TPR.G37524 Trifolium pratense
TPR.G38327 Trifolium pratense
TWI36G0480 Tripterygium wilfordii
unitig_52.g17653 Utricularia gibba
vmacro23156 Vaccinium macrocarpon
VMungo0464G0590 Vigna mungo
VMungo1215G0313 Vigna mungo
VMungo1383G1719 Vigna mungo
Zm00001eb206380 Zea mays
Zm00001eb234790 Zea mays

User provided reference genes

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