Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p17660 Brassica napus
A07p01240 Brassica napus
A08p00920 Brassica napus
A09p59270 Brassica napus
Aa31LG10G950 Aethionema arabicum
Aa31LG8G16550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2185 Anthoceros agrestis
Actinidia29882 Actinidia chinensis
Ah.14g085200 Amaranthus hybridus
Ah.15g094190 Amaranthus hybridus
AL1G63160 Arabidopsis lyrata
AL3G48720 Arabidopsis lyrata
AL3G49650 Arabidopsis lyrata
AL4G12660 Arabidopsis lyrata
Aqoxy7G01222 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AAGE1X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EKE883 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R4XM31 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VHP4C7 Arachis hypogaea
AT1G55160 Arabidopsis thaliana
AT2G19530 Arabidopsis thaliana
ATR0749G003 Amborella trichopoda
Atru.chr1.3680 Acer truncatum
Atru.chr7.1583 Acer truncatum
AUR62009814 Chenopodium quinoa
AUR62027502 Chenopodium quinoa
AUR62033981 Chenopodium quinoa
AUR62038126 Chenopodium quinoa
BcaB02g10842 Brassica carinata
BcaB03g16741 Brassica carinata
BcaB04g16988 Brassica carinata
BcaB08g34871 Brassica carinata
BcaC01g01468 Brassica carinata
BcaC06g36596 Brassica carinata
BcaC07g41248 Brassica carinata
BcaC08g44178 Brassica carinata
BolC3t21543H Brassica oleracea
BolC6t36771H Brassica oleracea
BolC8t51815H Brassica oleracea
BraA05t20658Z Brassica rapa
BraA07t27912Z Brassica rapa
C03p92290 Brassica napus
C06p15800 Brassica napus
C07p02390 Brassica napus
C08p42540 Brassica napus
CAN.G1389.12 Capsicum annuum
CANSAT56G2440 Cannabis sativa
CANSAT56G4409 Cannabis sativa
CARHR044760 Cardamine hirsuta
CARHR109960 Cardamine hirsuta
Carub.0001s4366 Capsella rubella
Carub.0003s3382 Capsella rubella
Ca_21276_v3 Cicer arietinum L.
Ca_23312_v3 Cicer arietinum L.
Ca_25637_v3 Cicer arietinum L.
Cc04_g02010 Coffea canephora
Cc06_g11370 Coffea canephora
CDE02G2335 Ceratophyllum demersum
CDE04G0205 Ceratophyllum demersum
CDE06G1058 Ceratophyllum demersum
Cfa003092 Carpinus fangiana
Ciclev10009803m.g Citrus clementina
Ciclev10026551m.g Citrus clementina
CiPaw.01G225600 Carya illinoinensis
CiPaw.02G140800 Carya illinoinensis
CiPaw.03G216800 Carya illinoinensis
ClCG09G000640 Citrullus lanatus
Cpa.g.sc25.60 Carica papaya
Cpa.g.sc25.62 Carica papaya
Cpa.g.sc93.25 Carica papaya
CsaV3_7G034840 Cucumis sativus L.
CSS0002253 Camellia sinensis var. sinensis
CSS0003677 Camellia sinensis var. sinensis
CSS0004116 Camellia sinensis var. sinensis
CSS0004916 Camellia sinensis var. sinensis
DCAR_016165 Daucus carota
Dinv36763 Davidia involucrata
Dinv37919 Davidia involucrata
Duzib168G2228 Durio zibethinus
Duzib192G0676 Durio zibethinus
Duzib235G0666 Durio zibethinus
ECA232G2496 Erigeron canadensis
ECA234G4759 Erigeron canadensis
EL10Ac6g13814 Beta vulgaris
EL10Ac7g15773 Beta vulgaris
EL10Ac8g19223 Beta vulgaris
Eucgr.C03894 Eucalyptus grandis
Eucgr.F03128 Eucalyptus grandis
FAN05G4539 Fragaria x ananassa
FAN14G0807 Fragaria x ananassa
FvH4_6g33180 Fragaria vesca
Glyma.07G010600 Glycine max
Glyma.07G105200 Glycine max
Glyma.08G193800 Glycine max
Glyma.13G103700 Glycine max
Glyma.17G055300 Glycine max
Gohir.A07G010800 Gossypium hirsutum
Gohir.A10G060800 Gossypium hirsutum
Gohir.D07G011100 Gossypium hirsutum
Gohir.D10G061900 Gossypium hirsutum
Gorai.001G011500 Gossypium raimondii
Gorai.011G066100 Gossypium raimondii
GSVIVG01015208001 Vitis vinifera
GSVIVG01016846001 Vitis vinifera
HanXRQChr03g0060431 Helianthus annuus
HanXRQChr09g0276411 Helianthus annuus
HanXRQChr10g0313061 Helianthus annuus
Haze_15942 Corylus avellana
Haze_15943 Corylus avellana
Haze_25907 Corylus avellana
Hma1.2p1_0388F.1_g142290 Hydrangea macrophylla
HPP92_007631 Vanilla planifolia
HPP92_009138 Vanilla planifolia
Hund06679 Selenicereus undatus
Hund18725 Selenicereus undatus
Hund20859 Selenicereus undatus
Lalb_Chr12g0199771 Lupinus albus
Lalb_Chr25g0280681 Lupinus albus
Lj3g0010265 Lotus japonicus
Lj4g0021282 Lotus japonicus
Lj5A46T61 Lonicera japonica
Lj5A46T62 Lonicera japonica
Lj7P675T40 Lonicera japonica
Lsat_1_v5_gn_4_95300 Lactuca sativa
Lsat_1_v5_gn_5_134840 Lactuca sativa
Lsat_1_v5_gn_5_134920 Lactuca sativa
Lsat_1_v5_gn_7_37320 Lactuca sativa
Manes.11G027100 Manihot esculenta
MBI01_g09953_MAGBIO Magnolia biondii
MD09G1194300 Malus domestica
MD17G1174800 Malus domestica
Medtr4g126360 Medicago truncatula
Medtr8g016210 Medicago truncatula
Medtr8g016220 Medicago truncatula
MELO3C024395.2 Cucumis melo
Migut.I01019 Erythranthe guttata
Migut.J00605 Erythranthe guttata
MSTRG.10988 Avicennia marina
MSTRG.19518 Avicennia marina
MSTRG.22591 Avicennia marina
MSTRG.6059 Avicennia marina
Nitab4.5_0003218g0010 Nicotiana tabacum
Nitab4.5_0005033g0020 Nicotiana tabacum
Nitab4.5_0005634g0090 Nicotiana tabacum
Nitab4.5_0007137g0040 Nicotiana tabacum
Nitab4.5_0007429g0040 Nicotiana tabacum
Nitab4.5_0021273g0010 Nicotiana tabacum
Nn6g35461 Nelumbo nucifera
Nn8g38879 Nelumbo nucifera
Oeu018419.1 Olea europaea
Os01g0579800 Oryza sativa ssp. japonica
Os05g0593200 Oryza sativa ssp. japonica
Peaxi162Scf00038g01523 Petunia axillaris
PGR102G0498 Punica granatum
PGR102G1948 Punica granatum
PGSC0003DMG400002500 Solanum tuberosum
PGSC0003DMG400033640 Solanum tuberosum
Phvul.003G137200 Phaseolus vulgaris
Phvul.010G139500 Phaseolus vulgaris
Potri.001G200200 Populus trichocarpa
Potri.006G151200 Populus trichocarpa
Pp3c10_3090 Physcomitrium patens
Pp3c14_9650 Physcomitrium patens
Prupe.3G050800 Prunus persica
Psat4g014720 Pisum sativum
Psat4g192760 Pisum sativum
PSO063G3162 Papaver somniferum
PSO832G1719 Papaver somniferum
QL01p028322 Quercus lobata
QL04p071305 Quercus lobata
QL05p013055 Quercus lobata
QL05p013214 Quercus lobata
QL05p014163 Quercus lobata
RcHm_v2.0_Chr2g0142911 Rosa chinensis
Rhsim03G0232700 Rhododendron simsii
Rhsim03G0232800 Rhododendron simsii
Sabra01G0156800 Salix brachista
Sabra06G0119700 Salix brachista
SalBow6G1491 Salvia bowleyana
Sc15g0000110 Simmondsia chinensis
Sc18g0002010 Simmondsia chinensis
Sed0009658 Sechium edule
Sed0023272 Sechium edule
SEGI_25640 Sequoiadendron giganteum
SGA_v2.0_scaffold260G45874 Striga asiatica
SMO203G0220 Selaginella moellendorffii
Solyc03g121520.3 Solanum lycopersicum
Solyc12g044850.2 Solanum lycopersicum
Sopen03g040330 Solanum pennellii
Sopen12g023210 Solanum pennellii
Sp1g40820 Schrenkiella parvula
TAR624G0259 Trochodendron aralioides
TAR636G1648 Trochodendron aralioides
THA.LOC104810345 Tarenaya hassleriana
THA.LOC104814616 Tarenaya hassleriana
THA.LOC104822633 Tarenaya hassleriana
Thecc.06G109100 Theobroma cacao
Thecc.09G089900 Theobroma cacao
Thhalv10011806m.g Eutrema salsugineum
Thhalv10022851m.g Eutrema salsugineum
TPR.G5401 Trifolium pratense
TPR.G7912 Trifolium pratense
TWI75G0934 Tripterygium wilfordii
TWI79G1769 Tripterygium wilfordii
unitig_748.g7457 Utricularia gibba
unitig_748.g8085 Utricularia gibba
vmacro06288 Vaccinium macrocarpon
vmacro18791 Vaccinium macrocarpon
vmacro23431 Vaccinium macrocarpon
VMungo0331G0087 Vigna mungo
VMungo1215G1650 Vigna mungo
Zm00001eb094060 Zea mays
Zm00001eb297270 Zea mays
Zm00001eb357050 Zea mays

User provided reference genes

Program Settings