Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31LG1G22280 Aethionema arabicum
Aa31LG2G10940 Aethionema arabicum
Actinidia11253 Actinidia chinensis
Actinidia35877 Actinidia chinensis
AL2G18170 Arabidopsis lyrata
AL6G11780 Arabidopsis lyrata
Aqoxy2G01410 Aquilegia oxysepala
Aqoxy4G02973 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4Q6X4E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IC0VJ2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QN9Q3M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SHBY5H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea
AT1G58210 Arabidopsis thaliana
AT5G02520 Arabidopsis thaliana
ATR0019G037 Amborella trichopoda
Atru.chr3.119 Acer truncatum
Atru.chr3.120 Acer truncatum
Atru.chr3.1551 Acer truncatum
AUR62019568 Chenopodium quinoa
AUR62043191 Chenopodium quinoa
BcaB04g20191 Brassica carinata
BcaB05g21888 Brassica carinata
BcaC03g13058 Brassica carinata
BcaC09g49501 Brassica carinata
BolC1t03544H Brassica oleracea
BolC2t06049H Brassica oleracea
BraA02t04720Z Brassica rapa
C02p00500 Brassica napus
CAN.G74.6 Capsicum annuum
CAN.G97.37 Capsicum annuum
CANSAT01G0457 Cannabis sativa
CANSAT21G1894 Cannabis sativa
CARHR053810 Cardamine hirsuta
CARHR210840 Cardamine hirsuta
Carub.0002s0640 Capsella rubella
Carub.0006s0132 Capsella rubella
Ca_04778_v3 Cicer arietinum L.
Ca_27793_v3 Cicer arietinum L.
Cc06_g02840 Coffea canephora
Cc06_g02850 Coffea canephora
Cc06_g06750 Coffea canephora
CDE07G1712 Ceratophyllum demersum
Cfa015779 Carpinus fangiana
Cfa017411 Carpinus fangiana
Ciclev10011079m.g Citrus clementina
Ciclev10021601m.g Citrus clementina
CiPaw.02G056500 Carya illinoinensis
CiPaw.10G144200 Carya illinoinensis
ClCG04G008330 Citrullus lanatus
ClCG07G015840 Citrullus lanatus
COL.COLO4_14835 Corchorus olitorius
COL.COLO4_20117 Corchorus olitorius
Cpa.g.sc260.5 Carica papaya
CsaV3_4G003560 Cucumis sativus L.
CsaV3_4G024810 Cucumis sativus L.
CSS0007124 Camellia sinensis var. sinensis
DCAR_019054 Daucus carota
DCAR_025649 Daucus carota
Dinv22692 Davidia involucrata
Dinv35623 Davidia involucrata
Duzib093G0200 Durio zibethinus
Duzib106G0893 Durio zibethinus
ECA233G2094 Erigeron canadensis
ECA233G3488 Erigeron canadensis
EL10Ac4g08332 Beta vulgaris
EL10Ac4g08337 Beta vulgaris
Eucgr.A00550 Eucalyptus grandis
Eucgr.I00627 Eucalyptus grandis
Eucgr.J00597 Eucalyptus grandis
FAN02G1934 Fragaria x ananassa
FAN05G2164 Fragaria x ananassa
FAN05G5174 Fragaria x ananassa
FAN07G2661 Fragaria x ananassa
FAN09G4560 Fragaria x ananassa
FAN09G4813 Fragaria x ananassa
FAN14G5980 Fragaria x ananassa
FAN17G0897 Fragaria x ananassa
FvH4_4g11320 Fragaria vesca
FvH4_6g14130 Fragaria vesca
FvH4_6g25230 Fragaria vesca
Glyma.09G003000 Glycine max
Glyma.10G043400 Glycine max
Glyma.13G131100 Glycine max
Gohir.A08G074200 Gossypium hirsutum
Gohir.A09G157600 Gossypium hirsutum
Gohir.D08G083400 Gossypium hirsutum
Gohir.D09G152900 Gossypium hirsutum
Gorai.004G087600 Gossypium raimondii
Gorai.006G174400 Gossypium raimondii
GSVIVG01013578001 Vitis vinifera
GSVIVG01034205001 Vitis vinifera
HanXRQChr04g0095521 Helianthus annuus
HanXRQChr08g0226161 Helianthus annuus
HanXRQChr08g0226171 Helianthus annuus
HanXRQChr13g0395031 Helianthus annuus
HanXRQChr13g0395041 Helianthus annuus
Haze_00715 Corylus avellana
Haze_20757 Corylus avellana
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla
HPP92_001613 Vanilla planifolia
HPP92_001614 Vanilla planifolia
Lalb_Chr06g0170971 Lupinus albus
Lj1g0011268 Lotus japonicus
Lj3A970G57 Lonicera japonica
Lj3g0014619 Lotus japonicus
Lsat_1_v5_gn_2_36541 Lactuca sativa
Lsat_1_v5_gn_6_35500 Lactuca sativa
Manes.04G049000 Manihot esculenta
Manes.08G078100 Manihot esculenta
MBI17_g16533_MAGBIO Magnolia biondii
MD04G1038200 Malus domestica
MD04G1124900 Malus domestica
MD05G1137700 Malus domestica
Medtr1g069015 Medicago truncatula
Medtr1g069020 Medicago truncatula
Medtr2g014410 Medicago truncatula
Medtr5g040080 Medicago truncatula
Medtr7g039520 Medicago truncatula
MELO3C003115.2 Cucumis melo
MELO3C017697.2 Cucumis melo
Migut.C00381 Erythranthe guttata
Migut.H00512 Erythranthe guttata
MSTRG.13246 Avicennia marina
MSTRG.924 Avicennia marina
Nitab4.5_0000761g0050 Nicotiana tabacum
Nitab4.5_0000847g0080 Nicotiana tabacum
Nitab4.5_0004091g0070 Nicotiana tabacum
Nitab4.5_0004701g0030 Nicotiana tabacum
Nn1g09826 Nelumbo nucifera
Nn2g10415 Nelumbo nucifera
Oeu047349.2 Olea europaea
Os01g0530300 Oryza sativa ssp. japonica
Os04g0347900 Oryza sativa ssp. japonica
Os04g0348000 Oryza sativa ssp. japonica
Peaxi162Scf00066g01134 Petunia axillaris
Peaxi162Scf00165g01840 Petunia axillaris
Peaxi162Scf00165g01848 Petunia axillaris
PGR004G2807 Punica granatum
PGR083G2046 Punica granatum
PGSC0003DMG400008848 Solanum tuberosum
PGSC0003DMG400027274 Solanum tuberosum
Phvul.007G157300 Phaseolus vulgaris
Phvul.011G086100 Phaseolus vulgaris
Potri.004G077400 Populus trichocarpa
Potri.007G124300 Populus trichocarpa
Potri.017G036100 Populus trichocarpa
Prupe.1G188100 Prunus persica
Prupe.6G252000 Prunus persica
Psat0s2606g0120 Pisum sativum
Psat0s2930g0040 Pisum sativum
Psat0s2930g0080 Pisum sativum
Psat2g183360 Pisum sativum
PSO339G3795 Papaver somniferum
PSO532G0060 Papaver somniferum
PSO541G3184 Papaver somniferum
PSO675G7155 Papaver somniferum
QL07p031114 Quercus lobata
QL07p031124 Quercus lobata
QL07p047847 Quercus lobata
QL09p046209 Quercus lobata
QL10p045460 Quercus lobata
RcHm_v2.0_Chr3g0467041 Rosa chinensis
RcHm_v2.0_Chr4g0407561 Rosa chinensis
Rhsim02G0075700 Rhododendron simsii
Rhsim05G0189700 Rhododendron simsii
Sabra04G0051000 Salix brachista
Sabra07G0100600 Salix brachista
Sc02g0004510 Simmondsia chinensis
Sed0000072 Sechium edule
Sed0019898 Sechium edule
SGA_v2.0_scaffold204G41637 Striga asiatica
SGA_v2.0_scaffold6G03139 Striga asiatica
SHI12657 Sapria himalayana
SHI29135 Sapria himalayana
Solyc04g015710.3 Solanum lycopersicum
Solyc09g010550.4 Solanum lycopersicum
Sopen04g007790 Solanum pennellii
Sopen09g005270 Solanum pennellii
Sp6g39990 Schrenkiella parvula
TAR362G1036 Trochodendron aralioides
TAR623G0639 Trochodendron aralioides
TAR629G3457 Trochodendron aralioides
THA.LOC104802302 Tarenaya hassleriana
THA.LOC104816287 Tarenaya hassleriana
Thecc.05G002600 Theobroma cacao
Thecc.05G042400 Theobroma cacao
Thhalv10015290m.g Eutrema salsugineum
TPR.G22580 Trifolium pratense
TPR.G23103 Trifolium pratense
TPR.G29857 Trifolium pratense
TPR.G37089 Trifolium pratense
TPR.G723 Trifolium pratense
TWI15G0304 Tripterygium wilfordii
TWI15G0472 Tripterygium wilfordii
TWI53G0119 Tripterygium wilfordii
TWI53G0288 Tripterygium wilfordii
unitig_736.g22251 Utricularia gibba
vmacro08698 Vaccinium macrocarpon
vmacro09402 Vaccinium macrocarpon
vmacro11490 Vaccinium macrocarpon
vmacro20133 Vaccinium macrocarpon
VMungo1127G0302 Vigna mungo
VMungo1127G0815 Vigna mungo
VMungo1127G2141 Vigna mungo
Zm00001eb310180 Zea mays

User provided reference genes

Program Settings