Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p20410 Brassica napus
A06p16390 Brassica napus
A07p15740 Brassica napus
A07p15840 Brassica napus
A07p41630 Brassica napus
Aa31LG4G6190 Aethionema arabicum
Aa31LG7G4670 Aethionema arabicum
Actinidia15462 Actinidia chinensis
Actinidia37954 Actinidia chinensis
Ah.00g000650 Amaranthus hybridus
AL1G33140 Arabidopsis lyrata
AL2G36110 Arabidopsis lyrata
Aqoxy6G01958 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.L00MPK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea
AT1G20310 Arabidopsis thaliana
AT1G76070 Arabidopsis thaliana
ATR0661G366 Amborella trichopoda
Atru.chr13.216 Acer truncatum
BcaB01g00240 Brassica carinata
BcaB03g14324 Brassica carinata
BcaB05g24968 Brassica carinata
BcaB07g32036 Brassica carinata
BcaC03g15643 Brassica carinata
BcaC05g25935 Brassica carinata
BcaC08g47100 Brassica carinata
BcaC08g47295 Brassica carinata
BcaC08g47296 Brassica carinata
BcaC08g47302 Brassica carinata
BcaNung03372 Brassica carinata
BolC2t09356H Brassica oleracea
BolC5t30588H Brassica oleracea
BolC6t40040H Brassica oleracea
BolC7t42850H Brassica oleracea
BraA02t07073Z Brassica rapa
BraA06t24743Z Brassica rapa
BraA07t29310Z Brassica rapa
BraA07t31692Z Brassica rapa
C02p33480 Brassica napus
C05p18890 Brassica napus
C06p50010 Brassica napus
C07p23130 Brassica napus
CAN.G401.21 Capsicum annuum
CANSAT25G0622 Cannabis sativa
CANSAT25G2444 Cannabis sativa
CANSAT25G2829 Cannabis sativa
CARHR020790 Cardamine hirsuta
CARHR069610 Cardamine hirsuta
Carub.0001s1981 Capsella rubella
Carub.0002s2296 Capsella rubella
Ca_13485_v3 Cicer arietinum L.
Ca_15466_v3 Cicer arietinum L.
Cc10_g01130 Coffea canephora
CDE05G2702 Ceratophyllum demersum
Cfa007032 Carpinus fangiana
Cfa014008 Carpinus fangiana
Ciclev10002153m.g Citrus clementina
Ciclev10027470m.g Citrus clementina
CiPaw.07G063500 Carya illinoinensis
CiPaw.07G143600 Carya illinoinensis
CiPaw.08G069200 Carya illinoinensis
ClCG05G015410 Citrullus lanatus
COL.COLO4_22498 Corchorus olitorius
COL.COLO4_26083 Corchorus olitorius
Cpa.g.sc26.264 Carica papaya
CsaV3_3G046130 Cucumis sativus L.
CSS0006148 Camellia sinensis var. sinensis
CSS0021479 Camellia sinensis var. sinensis
CSS0028811 Camellia sinensis var. sinensis
DCAR_009512 Daucus carota
DCAR_025088 Daucus carota
Dinv31893 Davidia involucrata
Dinv39556 Davidia involucrata
Duzib093G0730 Durio zibethinus
Duzib116G0616 Durio zibethinus
Duzib264G0532 Durio zibethinus
ECA233G2815 Erigeron canadensis
EL10Ac1g02082 Beta vulgaris
Eucgr.J02492 Eucalyptus grandis
FAN15G3480 Fragaria x ananassa
FAN19G2722 Fragaria x ananassa
FAN20G0850 Fragaria x ananassa
FAN27G2702 Fragaria x ananassa
FAN28G2348 Fragaria x ananassa
FvH4_1g11060 Fragaria vesca
FvH4_2g37950 Fragaria vesca
Glyma.02G043800 Glycine max
Glyma.04G020700 Glycine max
Glyma.06G020800 Glycine max
Glyma.11G081300 Glycine max
Glyma.14G222400 Glycine max
Glyma.17G261300 Glycine max
Gohir.A05G182800 Gossypium hirsutum
Gohir.A05G255800 Gossypium hirsutum
Gohir.A12G058500 Gossypium hirsutum
Gohir.D05G185800 Gossypium hirsutum
Gohir.D05G257500 Gossypium hirsutum
Gohir.D12G058500 Gossypium hirsutum
Gorai.008G061700 Gossypium raimondii
Gorai.009G191200 Gossypium raimondii
Gorai.009G268900 Gossypium raimondii
GSVIVG01008738001 Vitis vinifera
HanXRQChr12g0366681 Helianthus annuus
HanXRQChr12g0366691 Helianthus annuus
HanXRQChr14g0428491 Helianthus annuus
Haze_03701 Corylus avellana
Haze_22703 Corylus avellana
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla
HPP92_002481 Vanilla planifolia
Lalb_Chr01g0008491 Lupinus albus
Lalb_Chr03g0033561 Lupinus albus
Lalb_Chr05g0229691 Lupinus albus
Lalb_Chr08g0246301 Lupinus albus
Lalb_Chr19g0131611 Lupinus albus
Lalb_Chr23g0265991 Lupinus albus
Lj2g0017226 Lotus japonicus
Lj4g0000766 Lotus japonicus
Lj4g0015450 Lotus japonicus
Lj5g0013533 Lotus japonicus
Lsat_1_v5_gn_2_6961 Lactuca sativa
Lsat_1_v5_gn_8_29221 Lactuca sativa
Manes.02G110500 Manihot esculenta
Manes.05G142500 Manihot esculenta
Manes.18G009300 Manihot esculenta
MBI09_g01020_MAGBIO Magnolia biondii
MBI17_g07971_MAGBIO Magnolia biondii
Medtr1g026110 Medicago truncatula
Medtr3g114750 Medicago truncatula
Medtr5g023030 Medicago truncatula
Medtr8g074760 Medicago truncatula
MELO3C003727.2 Cucumis melo
Migut.C00894 Erythranthe guttata
Migut.N03186 Erythranthe guttata
MSTRG.24229 Avicennia marina
Nitab4.5_0000498g0080 Nicotiana tabacum
Nitab4.5_0002353g0090 Nicotiana tabacum
Nitab4.5_0003030g0080 Nicotiana tabacum
Nn1g08396 Nelumbo nucifera
Nn5g30846 Nelumbo nucifera
Nn6g31907 Nelumbo nucifera
Oeu026120.1 Olea europaea
Oeu039861.1 Olea europaea
Oeu051144.1 Olea europaea
Oeu057579.1 Olea europaea
Os09g0542900 Oryza sativa ssp. japonica
Peaxi162Scf00064g00081 Petunia axillaris
Peaxi162Scf00174g00083 Petunia axillaris
Peaxi162Scf00744g00026 Petunia axillaris
PGR031G0086 Punica granatum
PGR102G2057 Punica granatum
PGSC0003DMG400009955 Solanum tuberosum
PGSC0003DMG400029419 Solanum tuberosum
Phvul.001G002200 Phaseolus vulgaris
Phvul.002G104300 Phaseolus vulgaris
Phvul.003G267350 Phaseolus vulgaris
Phvul.009G019900 Phaseolus vulgaris
Potri.002G016500 Populus trichocarpa
Potri.005G107500 Populus trichocarpa
Potri.005G245600 Populus trichocarpa
Prupe.1G359400 Prunus persica
Prupe.7G175300 Prunus persica
Psat2g151840 Pisum sativum
Psat5g012200 Pisum sativum
Psat6g001080 Pisum sativum
PSO541G5041 Papaver somniferum
PSO675G7160 Papaver somniferum
QL02p012938 Quercus lobata
RcHm_v2.0_Chr6g0303671 Rosa chinensis
Rhsim06G0012200 Rhododendron simsii
Rhsim07G0251200 Rhododendron simsii
Sabra02G0013200 Salix brachista
Sabra05G0189700 Salix brachista
SalBow7G1496 Salvia bowleyana
Sc15g0004670 Simmondsia chinensis
Sed0006911 Sechium edule
SEGI_07401 Sequoiadendron giganteum
SEGI_29248 Sequoiadendron giganteum
SEGI_39582 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08585 Striga asiatica
SHI05037 Sapria himalayana
SHI08021 Sapria himalayana
SHI13075 Sapria himalayana
SHI27843 Sapria himalayana
Solyc04g081960.1 Solanum lycopersicum
Solyc12g094390.1 Solanum lycopersicum
Sopen04g035610 Solanum pennellii
Sopen12g031280 Solanum pennellii
Sp1g18040 Schrenkiella parvula
Sp5g31190 Schrenkiella parvula
TAR376G0945 Trochodendron aralioides
TAR381G1677 Trochodendron aralioides
TAR628G1607 Trochodendron aralioides
THA.LOC104811444 Tarenaya hassleriana
Thecc.01G011100 Theobroma cacao
Thecc.08G051800 Theobroma cacao
Thhalv10009337m.g Eutrema salsugineum
Thhalv10018992m.g Eutrema salsugineum
TPR.G25094 Trifolium pratense
TPR.G26427 Trifolium pratense
TPR.G32014 Trifolium pratense
TPR.G38194 Trifolium pratense
TWI12G1263 Tripterygium wilfordii
TWI56G0288 Tripterygium wilfordii
TWI73G0798 Tripterygium wilfordii
unitig_748.g7605 Utricularia gibba
vmacro04379 Vaccinium macrocarpon
VMungo0251G0852 Vigna mungo
VMungo0647G1822 Vigna mungo
VMungo1215G2410 Vigna mungo
VMungo1309G1265 Vigna mungo
Zm00001eb103980 Zea mays
Zm00001eb331720 Zea mays

User provided reference genes

Program Settings