Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p15790 Brassica napus
A10p09900 Brassica napus
Aa31LG3G8580 Aethionema arabicum
Aa31sc165G60 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.458 Anthoceros agrestis
Actinidia03117 Actinidia chinensis
Actinidia31814 Actinidia chinensis
Actinidia32873 Actinidia chinensis
Ah.08g214090 Amaranthus hybridus
AL8G26580 Arabidopsis lyrata
Aqoxy7G00394 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.HMB1PX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NN7C7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UE8RN5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XVLL42 Arachis hypogaea
AT5G52200 Arabidopsis thaliana
ATR0757G045 Amborella trichopoda
Atru.chr1.481 Acer truncatum
AUR62016003 Chenopodium quinoa
AUR62021211 Chenopodium quinoa
BcaB01g04191 Brassica carinata
BcaB01g04192 Brassica carinata
BcaB08g35572 Brassica carinata
BcaC01g06169 Brassica carinata
BcaC01g06172 Brassica carinata
BcaC04g20603 Brassica carinata
BolC3t14243H Brassica oleracea
BolC7t45924H Brassica oleracea
BolC9t57048H Brassica oleracea
BraA03t10869Z Brassica rapa
BraA10t43070Z Brassica rapa
C03p18460 Brassica napus
C09p41610 Brassica napus
CAN.G166.6 Capsicum annuum
CAN.G1704.1 Capsicum annuum
CAN.G507.11 Capsicum annuum
CANSAT21G1030 Cannabis sativa
CARHR232950 Cardamine hirsuta
CARHR265120 Cardamine hirsuta
Carub.0007s1545 Capsella rubella
Carub.0008s1229 Capsella rubella
Ca_06615_v3 Cicer arietinum L.
CBR_g17955 Chara braunii
Cc02_g03170 Coffea canephora
CDE04G2040 Ceratophyllum demersum
Ciclev10006977m.g Citrus clementina
Ciclev10022533m.g Citrus clementina
CiPaw.03G104800 Carya illinoinensis
CiPaw.04G065700 Carya illinoinensis
CiPaw.11G139200 Carya illinoinensis
CiPaw.16G095000 Carya illinoinensis
ClCG01G005500 Citrullus lanatus
Cpa.g.sc107.34 Carica papaya
CsaV3_5G005730 Cucumis sativus L.
CSS0015678 Camellia sinensis var. sinensis
CSS0022669 Camellia sinensis var. sinensis
CSS0039374 Camellia sinensis var. sinensis
CSS0042797 Camellia sinensis var. sinensis
DCAR_018189 Daucus carota
DCAR_020240 Daucus carota
Dinv28458 Davidia involucrata
Dinv35200 Davidia involucrata
Duzib068G0533 Durio zibethinus
Duzib084G1425 Durio zibethinus
Duzib205G0251 Durio zibethinus
Duzib205G1559 Durio zibethinus
ECA232G4709 Erigeron canadensis
ECA233G1278 Erigeron canadensis
ECA238G0732 Erigeron canadensis
EL10Ac3g05670 Beta vulgaris
Eucgr.K00241 Eucalyptus grandis
FAN01G0494 Fragaria x ananassa
FAN03G0230 Fragaria x ananassa
FAN03G3472 Fragaria x ananassa
FAN06G4027 Fragaria x ananassa
FAN06G4666 Fragaria x ananassa
FAN10G1156 Fragaria x ananassa
FvH4_7g29250 Fragaria vesca
Glyma.09G142100 Glycine max
Glyma.10G237400 Glycine max
Glyma.16G195400 Glycine max
Glyma.20G157200 Glycine max
Gohir.A08G100333 Gossypium hirsutum
Gohir.A08G179450 Gossypium hirsutum
Gohir.A09G040930 Gossypium hirsutum
Gohir.A09G180500 Gossypium hirsutum
Gohir.D08G111500 Gossypium hirsutum
Gohir.D08G198100 Gossypium hirsutum
Gohir.D09G041500 Gossypium hirsutum
Gohir.D09G175400 Gossypium hirsutum
Gorai.004G119500 Gossypium raimondii
Gorai.004G208900 Gossypium raimondii
Gorai.006G047800 Gossypium raimondii
Gorai.006G197500 Gossypium raimondii
GSVIVG01010550001 Vitis vinifera
GSVIVG01019830001 Vitis vinifera
HanXRQChr13g0395671 Helianthus annuus
HanXRQChr14g0462211 Helianthus annuus
Haze_08928 Corylus avellana
Haze_13733 Corylus avellana
Hma1.2p1_0270F.1_g108200 Hydrangea macrophylla
Hma1.2p1_2094F.1_g313950 Hydrangea macrophylla
HPP92_016063 Vanilla planifolia
HPP92_017209 Vanilla planifolia
HPP92_028814 Vanilla planifolia
Hund04727 Selenicereus undatus
Hund11760 Selenicereus undatus
Hund28786 Selenicereus undatus
Lalb_Chr01g0009211 Lupinus albus
Lalb_Chr19g0130961 Lupinus albus
Lj2g0008178 Lotus japonicus
Lj4A278T48 Lonicera japonica
Lj4A278T49 Lonicera japonica
LjContig00238g0006434 Lotus japonicus
Lsat_1_v5_gn_0_10360 Lactuca sativa
Lsat_1_v5_gn_0_29780 Lactuca sativa
Lsat_1_v5_gn_1_102960 Lactuca sativa
Lsat_1_v5_gn_2_10280 Lactuca sativa
Lsat_1_v5_gn_2_133800 Lactuca sativa
Lsat_1_v5_gn_2_26501 Lactuca sativa
Lsat_1_v5_gn_2_66880 Lactuca sativa
Lsat_1_v5_gn_5_1720 Lactuca sativa
Lsat_1_v5_gn_6_103800 Lactuca sativa
Lsat_1_v5_gn_8_63220 Lactuca sativa
Lsat_1_v5_gn_8_66160 Lactuca sativa
Lsat_1_v5_gn_8_6760 Lactuca sativa
Lsat_1_v5_gn_9_89540 Lactuca sativa
Manes.14G027300 Manihot esculenta
Mapoly0015s0139 Marchantia polymorpha
Mapoly0025s0030 Marchantia polymorpha
MBI04_g04732_MAGBIO Magnolia biondii
MD01G1199100 Malus domestica
MD07G1266900 Malus domestica
Medtr0022s0300 Medicago truncatula
Medtr1g100747 Medicago truncatula
MELO3C005380.2 Cucumis melo
Migut.F00355 Erythranthe guttata
Migut.F01132 Erythranthe guttata
MSTRG.8449 Avicennia marina
MSTRG.8749 Avicennia marina
Nitab4.5_0000203g0060 Nicotiana tabacum
Nitab4.5_0000716g0230 Nicotiana tabacum
Nitab4.5_0001508g0020 Nicotiana tabacum
Nitab4.5_0001600g0020 Nicotiana tabacum
Nitab4.5_0005523g0020 Nicotiana tabacum
Nitab4.5_0014916g0010 Nicotiana tabacum
Nn1g01407 Nelumbo nucifera
Nn6g34195 Nelumbo nucifera
Oeu021775.1 Olea europaea
Oeu061639.1 Olea europaea
Oeu062761.1 Olea europaea
Os02g0602300 Oryza sativa ssp. japonica
Os05g0301600 Oryza sativa ssp. japonica
Peaxi162Scf00132g01511 Petunia axillaris
Peaxi162Scf00338g00031 Petunia axillaris
PGR042G1969 Punica granatum
PGR142G3131 Punica granatum
PGSC0003DMG400010855 Solanum tuberosum
PGSC0003DMG400014326 Solanum tuberosum
PGSC0003DMG400030996 Solanum tuberosum
Phvul.004G118600 Phaseolus vulgaris
Phvul.007G068200 Phaseolus vulgaris
Potri.012G138600 Populus trichocarpa
Potri.015G140500 Populus trichocarpa
Pp3c17_21840 Physcomitrium patens
Pp3c2_9110 Physcomitrium patens
Prupe.2G292500 Prunus persica
Psat0ss2830g0120 Pisum sativum
Psat6g200640 Pisum sativum
PSO478G4201 Papaver somniferum
PSO782G4582 Papaver somniferum
QL09p014578 Quercus lobata
QL12p017686 Quercus lobata
RcHm_v2.0_Chr1g0377001 Rosa chinensis
Rhsim01G0180500 Rhododendron simsii
Rhsim03G0179100 Rhododendron simsii
Sabra12G0104000 Salix brachista
Sabra15G0151100 Salix brachista
SalBow2G0654 Salvia bowleyana
Sc25g0000430 Simmondsia chinensis
Sed0003103 Sechium edule
Sed0024024 Sechium edule
SEGI_10204 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05362 Striga asiatica
Solyc01g009610.3 Solanum lycopersicum
Solyc03g025980.3 Solanum lycopersicum
Solyc05g005520.1 Solanum lycopersicum
Sopen01g005140 Solanum pennellii
Sopen03g004800 Solanum pennellii
Sopen05g001530 Solanum pennellii
Sp6g14450 Schrenkiella parvula
Sp7g23560 Schrenkiella parvula
TAR374G0603 Trochodendron aralioides
TAR375G0255 Trochodendron aralioides
TAR629G1853 Trochodendron aralioides
THA.LOC104800259 Tarenaya hassleriana
Thecc.03G174600 Theobroma cacao
Thecc.03G273300 Theobroma cacao
Thhalv10014782m.g Eutrema salsugineum
Thhalv10026333m.g Eutrema salsugineum
TPR.G10770 Trifolium pratense
TPR.G14320 Trifolium pratense
TWI14G0563 Tripterygium wilfordii
TWI23G0489 Tripterygium wilfordii
TWI39G0473 Tripterygium wilfordii
unitig_0.g2485 Utricularia gibba
vmacro06699 Vaccinium macrocarpon
vmacro09842 Vaccinium macrocarpon
VMungo0464G1052 Vigna mungo
VMungo0720G1110 Vigna mungo
Zm00001eb000810 Zea mays
Zm00001eb051250 Zea mays
Zm00001eb184020 Zea mays
Zm00001eb304110 Zea mays
Zm00001eb422510 Zea mays

User provided reference genes

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