Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p32400 Brassica napus
A09p08100 Brassica napus
Aa31LG9G8570 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.24 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1392 Anthoceros agrestis
Actinidia22245 Actinidia chinensis
Ah.02g110700 Amaranthus hybridus
Ah.08g214170 Amaranthus hybridus
Ah.14g078620 Amaranthus hybridus
AL8G15040 Arabidopsis lyrata
AL8G15050 Arabidopsis lyrata
AL8G40160 Arabidopsis lyrata
Aqoxy3G04361 Aquilegia oxysepala
Aqoxy5G03795 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.NL9YDM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YL4ID2 Arachis hypogaea
AT5G44590 Arabidopsis thaliana
AT5G44600 Arabidopsis thaliana
AT5G63100 Arabidopsis thaliana
ATR0620G099 Amborella trichopoda
ATR1154G020 Amborella trichopoda
Atru.chr10.197 Acer truncatum
Atru.chr9.2554 Acer truncatum
AUR62008159 Chenopodium quinoa
AUR62017158 Chenopodium quinoa
AUR62028739 Chenopodium quinoa
AUR62035646 Chenopodium quinoa
BcaB03g13157 Brassica carinata
BcaB04g19940 Brassica carinata
BcaNung02573 Brassica carinata
BcaNung02574 Brassica carinata
BcaNung02578 Brassica carinata
BolC8t49225H Brassica oleracea
BolC9t53829H Brassica oleracea
BraA08t35163Z Brassica rapa
BraA09t36461Z Brassica rapa
C08p16030 Brassica napus
C09p09160 Brassica napus
CAN.G792.11 Capsicum annuum
CAN.G792.12 Capsicum annuum
CAN.G993.27 Capsicum annuum
CANSAT21G1563 Cannabis sativa
CANSAT56G4187 Cannabis sativa
CARHR178350 Cardamine hirsuta
CARHR178360 Cardamine hirsuta
CARHR276940 Cardamine hirsuta
Carub.0008s0373 Capsella rubella
Carub.0008s0374 Capsella rubella
Carub.0008s2385 Capsella rubella
Ca_03281_v3 Cicer arietinum L.
Ca_14265_v3 Cicer arietinum L.
Cc03_g01370 Coffea canephora
Cc04_g11780 Coffea canephora
CDE09G1107 Ceratophyllum demersum
CDE11G1064 Ceratophyllum demersum
Cfa016044 Carpinus fangiana
Ciclev10015801m.g Citrus clementina
Ciclev10021214m.g Citrus clementina
CiPaw.11G021900 Carya illinoinensis
CiPaw.16G078500 Carya illinoinensis
ClCG01G013410 Citrullus lanatus
ClCG09G022940 Citrullus lanatus
COL.COLO4_30161 Corchorus olitorius
COL.COLO4_37570 Corchorus olitorius
Cpa.g.sc110.14 Carica papaya
Cpa.g.sc30.51 Carica papaya
Cre07.g313600 Chlamydomonas reinhardtii
Cre07.g314450 Chlamydomonas reinhardtii
CsaV3_1G008760 Cucumis sativus L.
CsaV3_7G023200 Cucumis sativus L.
CSS0002386 Camellia sinensis var. sinensis
CSS0045781 Camellia sinensis var. sinensis
DCAR_004518 Daucus carota
DCAR_021578 Daucus carota
Dinv11460 Davidia involucrata
Dinv38549 Davidia involucrata
Duzib068G0058 Durio zibethinus
Duzib093G0472 Durio zibethinus
EL10Ac4g07517 Beta vulgaris
Eucgr.F04491 Eucalyptus grandis
Eucgr.G00016 Eucalyptus grandis
Eucgr.G00019 Eucalyptus grandis
Eucgr.J03201 Eucalyptus grandis
Eucgr.K02808 Eucalyptus grandis
FAN11G2182 Fragaria x ananassa
FAN16G0999 Fragaria x ananassa
FAN21G3217 Fragaria x ananassa
FAN25G0929 Fragaria x ananassa
FvH4_3g13540 Fragaria vesca
FvH4_5g06050 Fragaria vesca
Glyma.08G161400 Glycine max
Glyma.17G085800 Glycine max
Gohir.A01G189800 Gossypium hirsutum
Gohir.A08G097848 Gossypium hirsutum
Gohir.D01G179800 Gossypium hirsutum
Gohir.D08G107900 Gossypium hirsutum
Gorai.002G222800 Gossypium raimondii
Gorai.004G115500 Gossypium raimondii
GSVIVG01007672001 Vitis vinifera
GSVIVG01015902001 Vitis vinifera
HanXRQChr03g0093531 Helianthus annuus
Haze_00412 Corylus avellana
Haze_18444 Corylus avellana
Hma1.2p1_0436F.1_g152930 Hydrangea macrophylla
HPP92_014502 Vanilla planifolia
HPP92_014509 Vanilla planifolia
Lalb_Chr07g0182921 Lupinus albus
Lalb_Chr25g0283991 Lupinus albus
Lj2A145T59 Lonicera japonica
Lj3g0022748 Lotus japonicus
Lj4g0004164 Lotus japonicus
Lj9P444T58 Lonicera japonica
Lsat_1_v5_gn_4_77041 Lactuca sativa
Lsat_1_v5_gn_7_35520 Lactuca sativa
Manes.03G070200 Manihot esculenta
Manes.14G061900 Manihot esculenta
Mapoly0036s0150 Marchantia polymorpha
Mapoly0064s0054 Marchantia polymorpha
MBI04_g15076_MAGBIO Magnolia biondii
MBI04_g46319_MAGBIO Magnolia biondii
MBI04_g46320_MAGBIO Magnolia biondii
MBI04_g47854_MAGBIO Magnolia biondii
MBI10_g00740_MAGBIO Magnolia biondii
MCO11G557 Micromonas commoda
MD00G1085200 Malus domestica
MD06G1167600 Malus domestica
MD10G1220900 Malus domestica
MD14G1173100 Malus domestica
Medtr2g062700 Medicago truncatula
Medtr4g105140 Medicago truncatula
MELO3C002291.2 Cucumis melo
MELO3C012575.2 Cucumis melo
Migut.H02555 Erythranthe guttata
Migut.H02559 Erythranthe guttata
Migut.O00141 Erythranthe guttata
MSTRG.14629 Avicennia marina
MSTRG.23228 Avicennia marina
Nitab4.5_0000799g0070 Nicotiana tabacum
Nitab4.5_0005519g0050 Nicotiana tabacum
Nn4g22643 Nelumbo nucifera
Nn7g37200 Nelumbo nucifera
Oeu023449.1 Olea europaea
Oeu046375.1 Olea europaea
Os02g0489500 Oryza sativa ssp. japonica
Os03g0126300 Oryza sativa ssp. japonica
Peaxi162Scf00689g00010 Petunia axillaris
Peaxi162Scf01257g00028 Petunia axillaris
PGR044G2024 Punica granatum
PGR044G2273 Punica granatum
PGSC0003DMG400005855 Solanum tuberosum
PGSC0003DMG400026990 Solanum tuberosum
Phvul.003G203700 Phaseolus vulgaris
Phvul.005G044700 Phaseolus vulgaris
Potri.001G073000 Populus trichocarpa
Potri.015G082432 Populus trichocarpa
Pp3c1_3890 Physcomitrium patens
Pp3c1_890 Physcomitrium patens
Pp3c21_7930 Physcomitrium patens
Pp3c5_18300 Physcomitrium patens
PRCOL_00004230 Prasinoderma coloniale
Prupe.4G123600 Prunus persica
Prupe.5G167300 Prunus persica
Psat1g130360 Pisum sativum
Psat4g059560 Pisum sativum
PSO384G3827 Papaver somniferum
PSO832G3605 Papaver somniferum
QL04p096651 Quercus lobata
QL05p000504 Quercus lobata
QL10p007898 Quercus lobata
RcHm_v2.0_Chr5g0022501 Rosa chinensis
RcHm_v2.0_Chr7g0192811 Rosa chinensis
Rhsim02G0256200 Rhododendron simsii
Rhsim08G0176100 Rhododendron simsii
Sabra01G0051500 Salix brachista
Sabra15G0105900 Salix brachista
SalBow5G3744 Salvia bowleyana
SalBow8G5376 Salvia bowleyana
Sc10g0010180 Simmondsia chinensis
Sc23g0006040 Simmondsia chinensis
Sed0004811 Sechium edule
Sed0019415 Sechium edule
SEGI_26446 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06261 Striga asiatica
SGA_v2.0_scaffold90G27859 Striga asiatica
SMO169G0024 Selaginella moellendorffii
SMO169G0034 Selaginella moellendorffii
SMO169G0078 Selaginella moellendorffii
SMO202G0034 Selaginella moellendorffii
SMO358G0730 Selaginella moellendorffii
Solyc06g071670.1 Solanum lycopersicum
Solyc08g013720.4 Solanum lycopersicum
Sopen06g027980 Solanum pennellii
Sopen08g004560 Solanum pennellii
Sp2g09390 Schrenkiella parvula
Sp2g09400 Schrenkiella parvula
Sp2g26230 Schrenkiella parvula
TAR374G0422 Trochodendron aralioides
TAR629G1919 Trochodendron aralioides
THA.LOC104798967 Tarenaya hassleriana
THA.LOC104806237 Tarenaya hassleriana
Thecc.03G021400 Theobroma cacao
Thecc.05G118200 Theobroma cacao
Thhalv10000954m.g Eutrema salsugineum
Thhalv10001112m.g Eutrema salsugineum
Thhalv10001195m.g Eutrema salsugineum
Thhalv10005653m.g Eutrema salsugineum
TPR.G3625 Trifolium pratense
TPR.G37515 Trifolium pratense
TWI38G1467 Tripterygium wilfordii
TWI39G1165 Tripterygium wilfordii
unitig_747.g21659 Utricularia gibba
unitig_8.g3059 Utricularia gibba
unitig_8.g3060 Utricularia gibba
vmacro19317 Vaccinium macrocarpon
VMungo1080G0527 Vigna mungo
VMungo1215G1835 Vigna mungo

User provided reference genes

Program Settings