Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p35110 Brassica napus
A09p65870 Brassica napus
Aa31sc332G10 Aethionema arabicum
Actinidia06988 Actinidia chinensis
Actinidia33455 Actinidia chinensis
Ah.06g194810 Amaranthus hybridus
AL1G18930 Arabidopsis lyrata
Aqoxy2G00508 Aquilegia oxysepala
Aqoxy5G03941 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4ZPK1I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FW4L9V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YQF4QR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z71ZTI Arachis hypogaea
AT1G08500 Arabidopsis thaliana
ATR0307G078 Amborella trichopoda
ATR0661G345 Amborella trichopoda
Atru.chr3.2852 Acer truncatum
Atru.chr5.356 Acer truncatum
AUR62004253 Chenopodium quinoa
AUR62006567 Chenopodium quinoa
AUR62042743 Chenopodium quinoa
BcaB03g13328 Brassica carinata
BcaC07g38397 Brassica carinata
BcaC07g41941 Brassica carinata
BcaC07g41942 Brassica carinata
BolC8t48833H Brassica oleracea
BolC8t52525H Brassica oleracea
BraA08t35420Z Brassica rapa
C08p11540 Brassica napus
C08p49970 Brassica napus
CAN.G1561.15 Capsicum annuum
CAN.G331.7 Capsicum annuum
CANSAT54G2684 Cannabis sativa
CANSAT56G0087 Cannabis sativa
CARHR008390 Cardamine hirsuta
Carub.0001s0786 Capsella rubella
Ca_06187_v3 Cicer arietinum L.
Ca_07839_v3 Cicer arietinum L.
Cc01_g06530 Coffea canephora
Cc02_g36380 Coffea canephora
CDE04G3103 Ceratophyllum demersum
CDE11G1243 Ceratophyllum demersum
Cfa009916 Carpinus fangiana
Ciclev10016454m.g Citrus clementina
Ciclev10022194m.g Citrus clementina
CiPaw.02G165400 Carya illinoinensis
CiPaw.11G073700 Carya illinoinensis
CiPaw.14G110400 Carya illinoinensis
ClCG02G022660 Citrullus lanatus
ClCG06G000290 Citrullus lanatus
COL.COLO4_06622 Corchorus olitorius
COL.COLO4_12587 Corchorus olitorius
Cpa.g.c32589 Carica papaya
Cpa.g.sc18.153 Carica papaya
CsaV3_6G006080 Cucumis sativus L.
CsaV3_6G038780 Cucumis sativus L.
CSS0021136 Camellia sinensis var. sinensis
CSS0030800 Camellia sinensis var. sinensis
CSS0031380 Camellia sinensis var. sinensis
CSS0032795 Camellia sinensis var. sinensis
DCAR_006883 Daucus carota
DCAR_031626 Daucus carota
Dinv02412 Davidia involucrata
Dinv22196 Davidia involucrata
Dinv32397 Davidia involucrata
Dinv36135 Davidia involucrata
Duzib138G1748 Durio zibethinus
Duzib150G0466 Durio zibethinus
Duzib268G0200 Durio zibethinus
ECA234G4259 Erigeron canadensis
ECA238G4331 Erigeron canadensis
EL10Ac1g00920 Beta vulgaris
EL10Ac4g10084 Beta vulgaris
Eucgr.B03755 Eucalyptus grandis
Eucgr.D02434 Eucalyptus grandis
FAN01G1454 Fragaria x ananassa
FAN03G1209 Fragaria x ananassa
FAN04G2163 Fragaria x ananassa
FAN06G3727 Fragaria x ananassa
FAN06G4544 Fragaria x ananassa
FAN08G2045 Fragaria x ananassa
FAN10G2980 Fragaria x ananassa
FAN10G4201 Fragaria x ananassa
FAN13G1331 Fragaria x ananassa
FAN13G1881 Fragaria x ananassa
FAN18G4184 Fragaria x ananassa
FAN18G4290 Fragaria x ananassa
FvH4_5g22740 Fragaria vesca
FvH4_7g12470 Fragaria vesca
Glyma.02G277700 Glycine max
Glyma.09G266700 Glycine max
Glyma.14G036900 Glycine max
Glyma.18G223900 Glycine max
Gohir.A05G072400 Gossypium hirsutum
Gohir.A07G145200 Gossypium hirsutum
Gohir.D05G075200 Gossypium hirsutum
Gohir.D07G151400 Gossypium hirsutum
Gorai.001G173300 Gossypium raimondii
Gorai.009G076500 Gossypium raimondii
GSVIVG01027562001 Vitis vinifera
GSVIVG01037359001 Vitis vinifera
HanXRQChr14g0432891 Helianthus annuus
HanXRQChr16g0523401 Helianthus annuus
Haze_16726 Corylus avellana
Haze_23273 Corylus avellana
Hma1.2p1_0460F.1_g157670 Hydrangea macrophylla
Hma1.2p1_0532F.1_g173415 Hydrangea macrophylla
HPP92_003586 Vanilla planifolia
HPP92_023385 Vanilla planifolia
Hund07418 Selenicereus undatus
Hund27341 Selenicereus undatus
Lalb_Chr01g0021261 Lupinus albus
Lalb_Chr04g0249311 Lupinus albus
Lalb_Chr10g0106111 Lupinus albus
Lj1g0016529 Lotus japonicus
Lj4C833T1 Lonicera japonica
Lj7C525T12 Lonicera japonica
LjContig00564g0021632 Lotus japonicus
Lsat_1_v5_gn_2_31121 Lactuca sativa
Lsat_1_v5_gn_4_37561 Lactuca sativa
Manes.01G264500 Manihot esculenta
Manes.02G136300 Manihot esculenta
MBI04_g26203_MAGBIO Magnolia biondii
MBI04_g41104_MAGBIO Magnolia biondii
MBI13_g09207_MAGBIO Magnolia biondii
MBI13_g46382_MAGBIO Magnolia biondii
MD02G1199000 Malus domestica
MD03G1156900 Malus domestica
MD11G1183800 Malus domestica
Medtr5g088990 Medicago truncatula
Medtr7g075770 Medicago truncatula
MELO3C014540.2 Cucumis melo
MELO3C022509.2 Cucumis melo
Migut.D00682 Erythranthe guttata
Migut.N01585 Erythranthe guttata
MSTRG.17640 Avicennia marina
MSTRG.28195 Avicennia marina
Nitab4.5_0000492g0180 Nicotiana tabacum
Nitab4.5_0002026g0130 Nicotiana tabacum
Nitab4.5_0002372g0060 Nicotiana tabacum
Nitab4.5_0002436g0050 Nicotiana tabacum
Nitab4.5_0005340g0030 Nicotiana tabacum
Nn2g14745 Nelumbo nucifera
Nn6g34346 Nelumbo nucifera
Nn7g36905 Nelumbo nucifera
Oeu026237.1 Olea europaea
Oeu061693.2 Olea europaea
Os01g0281600 Oryza sativa ssp. japonica
Os11g0491500 Oryza sativa ssp. japonica
Os12g0454600 Oryza sativa ssp. japonica
Peaxi162Scf00029g02515 Petunia axillaris
Peaxi162Scf00988g00320 Petunia axillaris
PGR031G1765 Punica granatum
PGR102G0878 Punica granatum
PGSC0003DMG400000142 Solanum tuberosum
PGSC0003DMG400032506 Solanum tuberosum
Phvul.008G074200 Phaseolus vulgaris
Phvul.008G203314 Phaseolus vulgaris
Potri.001G273000 Populus trichocarpa
Potri.002G150600 Populus trichocarpa
Potri.009G067300 Populus trichocarpa
Potri.014G072700 Populus trichocarpa
Prupe.2G149300 Prunus persica
Prupe.4G270100 Prunus persica
Psat0s2305g0040 Pisum sativum
Psat0ss4236g0240 Pisum sativum
PSO339G6483 Papaver somniferum
PSO478G2600 Papaver somniferum
PSO782G3191 Papaver somniferum
QL01p016398 Quercus lobata
QL08p051591 Quercus lobata
RcHm_v2.0_Chr1g0351281 Rosa chinensis
RcHm_v2.0_Chr5g0044801 Rosa chinensis
RcHm_v2.0_Chr7g0211321 Rosa chinensis
Rhsim01G0161100 Rhododendron simsii
Rhsim01G0161200 Rhododendron simsii
Rhsim13G0204900 Rhododendron simsii
Sabra02G0119000 Salix brachista
Sabra09G0050200 Salix brachista
Sabra14G0051900 Salix brachista
Sabra16G0168200 Salix brachista
SalBow5G4846 Salvia bowleyana
SalBow6G6419 Salvia bowleyana
Sc09g0001140 Simmondsia chinensis
Sc23g0003430 Simmondsia chinensis
Sed0020500 Sechium edule
Sed0025886 Sechium edule
SEGI_22430 Sequoiadendron giganteum
SEGI_27110 Sequoiadendron giganteum
SGA_v2.0_scaffold29G12207 Striga asiatica
SGA_v2.0_scaffold43G16463 Striga asiatica
SMO340G0044 Selaginella moellendorffii
Solyc01g094040.3 Solanum lycopersicum
Solyc11g062350.2 Solanum lycopersicum
Sopen01g037860 Solanum pennellii
Sopen11g024320 Solanum pennellii
Sp1g07160 Schrenkiella parvula
TAR623G1391 Trochodendron aralioides
TAR629G2043 Trochodendron aralioides
TAR633G2256 Trochodendron aralioides
THA.LOC104800462 Tarenaya hassleriana
Thecc.01G372700 Theobroma cacao
Thecc.09G254200 Theobroma cacao
Thhalv10008399m.g Eutrema salsugineum
TPR.G12345 Trifolium pratense
TPR.G16406 Trifolium pratense
TWI59G0507 Tripterygium wilfordii
TWI79G0487 Tripterygium wilfordii
unitig_578.g16484 Utricularia gibba
unitig_578.g16662 Utricularia gibba
vmacro04084 Vaccinium macrocarpon
vmacro20993 Vaccinium macrocarpon
VMungo0647G1275 Vigna mungo
VMungo1383G0950 Vigna mungo
Zm00001eb129330 Zea mays
Zm00001eb200430 Zea mays

User provided reference genes

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