Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00480 Brassica napus
A03p02500 Brassica napus
A03p37030 Brassica napus
A05p38000 Brassica napus
Aa31LG11G7030 Aethionema arabicum
Aa31LG1G22660 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5566 Anthoceros agrestis
Actinidia05330 Actinidia chinensis
Actinidia13159 Actinidia chinensis
Actinidia13826 Actinidia chinensis
Actinidia29175 Actinidia chinensis
Ah.02g114940 Amaranthus hybridus
AL3G22910 Arabidopsis lyrata
AL6G11260 Arabidopsis lyrata
AL6G15940 Arabidopsis lyrata
Aqoxy1G00825 Aquilegia oxysepala
Aqoxy2G02354 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.06159S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.83D75L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S5XCFM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VI4CJB Arachis hypogaea
AT3G11397 Arabidopsis thaliana
AT5G02040 Arabidopsis thaliana
AT5G05987 Arabidopsis thaliana
ATR0559G099 Amborella trichopoda
Atru.chr8.2075 Acer truncatum
AUR62025810 Chenopodium quinoa
AUR62043660 Chenopodium quinoa
BcaB01g05968 Brassica carinata
BcaB01g06074 Brassica carinata
BcaB01g06208 Brassica carinata
BcaB04g18637 Brassica carinata
BcaB05g21686 Brassica carinata
BcaB05g21709 Brassica carinata
BcaB06g25630 Brassica carinata
BcaC01g04125 Brassica carinata
BolC2t06222H Brassica oleracea
BolC3t12639H Brassica oleracea
BolC3t12839H Brassica oleracea
BolC3t16747H Brassica oleracea
BolC5t34340H Brassica oleracea
BraA02t04867Z Brassica rapa
BraA03t09440Z Brassica rapa
BraA03t09611Z Brassica rapa
BraA03t12865Z Brassica rapa
BraA05t22591Z Brassica rapa
C02p02560 Brassica napus
C03p00760 Brassica napus
C03p02840 Brassica napus
C03p44870 Brassica napus
C05p56760 Brassica napus
CAN.G229.31 Capsicum annuum
CAN.G502.29 Capsicum annuum
CANSAT35G1286 Cannabis sativa
CARHR085930 Cardamine hirsuta
CARHR207210 Cardamine hirsuta
CARHR211320 Cardamine hirsuta
Carub.0003s1070 Capsella rubella
Carub.0006s0089 Capsella rubella
Carub.0006s0488 Capsella rubella
Ca_26601_v3 Cicer arietinum L.
CBR_g200 Chara braunii
Cc06_g02190 Coffea canephora
CDE03G0039 Ceratophyllum demersum
CDE04G3116 Ceratophyllum demersum
Cfa017312 Carpinus fangiana
Ciclev10012766m.g Citrus clementina
CiPaw.09G199600 Carya illinoinensis
CiPaw.10G148600 Carya illinoinensis
ClCG10G021470 Citrullus lanatus
COL.COLO4_14718 Corchorus olitorius
Cpa.g.sc56.41 Carica papaya
Cre06.g267900 Chlamydomonas reinhardtii
CsaV3_3G034560 Cucumis sativus L.
CSS0028664 Camellia sinensis var. sinensis
CSS0042963 Camellia sinensis var. sinensis
DCAR_012132 Daucus carota
DCAR_012133 Daucus carota
Dinv35553 Davidia involucrata
Dinv35554 Davidia involucrata
Dinv37131 Davidia involucrata
Duzib093G0287 Durio zibethinus
Duzib093G0571 Durio zibethinus
Duzib128G0484 Durio zibethinus
ECA236G3402 Erigeron canadensis
ECA247G3534 Erigeron canadensis
EL10Ac5g11537 Beta vulgaris
Eucgr.B02720 Eucalyptus grandis
Eucgr.K03055 Eucalyptus grandis
FAN02G3148 Fragaria x ananassa
FAN05G0919 Fragaria x ananassa
FAN09G4171 Fragaria x ananassa
FAN14G1710 Fragaria x ananassa
FvH4_6g12950 Fragaria vesca
Glyma.07G138300 Glycine max
Glyma.18G188700 Glycine max
Gohir.A04G085300 Gossypium hirsutum
Gohir.A09G153200 Gossypium hirsutum
Gohir.A13G098900 Gossypium hirsutum
Gohir.D04G124800 Gossypium hirsutum
Gohir.D04G124900 Gossypium hirsutum
Gohir.D09G148900 Gossypium hirsutum
Gohir.D13G094900 Gossypium hirsutum
Gorai.001G247100 Gossypium raimondii
Gorai.006G170100 Gossypium raimondii
Gorai.012G107900 Gossypium raimondii
GSVIVG01034090001 Vitis vinifera
HanXRQChr04g0124571 Helianthus annuus
HanXRQChr06g0177401 Helianthus annuus
Haze_20867 Corylus avellana
Hma1.2p1_0766F.1_g215120 Hydrangea macrophylla
HPP92_006637 Vanilla planifolia
Lalb_Chr07g0193111 Lupinus albus
Lalb_Chr12g0209481 Lupinus albus
Lj1g0003588 Lotus japonicus
Lj2C88G6 Lonicera japonica
Lj3C962G6 Lonicera japonica
Lj3C962T8 Lonicera japonica
Lsat_1_v5_gn_8_84620 Lactuca sativa
Lsat_1_v5_gn_9_31560 Lactuca sativa
Manes.07G121000 Manihot esculenta
Manes.09G096700 Manihot esculenta
Manes.10G023700 Manihot esculenta
Manes.10G023950 Manihot esculenta
Manes.10G024102 Manihot esculenta
Manes.10G024133 Manihot esculenta
Manes.10G024240 Manihot esculenta
Manes.10G024350 Manihot esculenta
Manes.10G024500 Manihot esculenta
MBI14_g09009_MAGBIO Magnolia biondii
MCO11G717 Micromonas commoda
MD04G1136600 Malus domestica
MD12G1150900 Malus domestica
Medtr7g064090 Medicago truncatula
MELO3C009227.2 Cucumis melo
Migut.J00279 Erythranthe guttata
Migut.L01968 Erythranthe guttata
MSTRG.19061 Avicennia marina
MSTRG.5634 Avicennia marina
Nitab4.5_0000362g0070 Nicotiana tabacum
Nitab4.5_0000828g0020 Nicotiana tabacum
Nitab4.5_0002170g0020 Nicotiana tabacum
Nitab4.5_0006535g0010 Nicotiana tabacum
Nn2g11258 Nelumbo nucifera
Nn2g13502 Nelumbo nucifera
Nn8g40380 Nelumbo nucifera
Nn8g40381 Nelumbo nucifera
Oeu001403.1 Olea europaea
Oeu001846.1 Olea europaea
Oeu053772.2 Olea europaea
Os01g0847900 Oryza sativa ssp. japonica
Os05g0455600 Oryza sativa ssp. japonica
Peaxi162Scf00318g00033 Petunia axillaris
PGSC0003DMG400008814 Solanum tuberosum
PGSC0003DMG400011082 Solanum tuberosum
Phvul.008G114700 Phaseolus vulgaris
Potri.006G091300 Populus trichocarpa
Potri.008G060400 Populus trichocarpa
Potri.010G198000 Populus trichocarpa
Pp3c12_10880 Physcomitrium patens
Pp3c13_19480 Physcomitrium patens
Pp3c3_20660 Physcomitrium patens
PRCOL_00006226 Prasinoderma coloniale
Prupe.6G262800 Prunus persica
Psat3g132880 Pisum sativum
PSO339G6598 Papaver somniferum
PSO513G0067 Papaver somniferum
QL07p028600 Quercus lobata
RcHm_v2.0_Chr3g0465061 Rosa chinensis
Rhsim04G0162500 Rhododendron simsii
Sabra06G0068900 Salix brachista
Sabra08G0044500 Salix brachista
Sabra10G0152400 Salix brachista
SalBow4G0992 Salvia bowleyana
SalBow5G2615 Salvia bowleyana
SalBow5G4168 Salvia bowleyana
Sc01g0004690 Simmondsia chinensis
Sed0001648 Sechium edule
Sed0010440 Sechium edule
SEGI_11528 Sequoiadendron giganteum
SEGI_12207 Sequoiadendron giganteum
SGA_v2.0_scaffold17G08097 Striga asiatica
SGA_v2.0_scaffold36G14429 Striga asiatica
SGA_v2.0_scaffold453G51862 Striga asiatica
SGA_v2.0_scaffold476G52141 Striga asiatica
SGA_v2.0_scaffold94G28566 Striga asiatica
SMO361G0592 Selaginella moellendorffii
SMO361G0594 Selaginella moellendorffii
Solyc09g011310.3 Solanum lycopersicum
Solyc10g084920.2 Solanum lycopersicum
Sopen09g006030 Solanum pennellii
Sopen10g034380 Solanum pennellii
Sp3g09620 Schrenkiella parvula
Sp6g36900 Schrenkiella parvula
Sp6g40390 Schrenkiella parvula
TAR369G0152 Trochodendron aralioides
TAR623G1499 Trochodendron aralioides
TAR633G1532 Trochodendron aralioides
THA.LOC104808383 Tarenaya hassleriana
THA.LOC104816246 Tarenaya hassleriana
THA.LOC104816578 Tarenaya hassleriana
THA.LOC104826870 Tarenaya hassleriana
THA.LOC104827026 Tarenaya hassleriana
Thecc.05G031300 Theobroma cacao
Thhalv10014679m.g Eutrema salsugineum
Thhalv10014680m.g Eutrema salsugineum
Thhalv10021519m.g Eutrema salsugineum
TPR.G18385 Trifolium pratense
TWI53G1712 Tripterygium wilfordii
TWI74G1381 Tripterygium wilfordii
TWI77G0667 Tripterygium wilfordii
unitig_22.g6579 Utricularia gibba
unitig_578.g15881 Utricularia gibba
vmacro08633 Vaccinium macrocarpon
VMungo1383G0406 Vigna mungo
Zm00001eb289520 Zea mays
Zm00001eb347670 Zea mays

User provided reference genes

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