Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p17790 Brassica napus
A08p36250 Brassica napus
A10p04560 Brassica napus
Aa31LG5G5350 Aethionema arabicum
Actinidia03243 Actinidia chinensis
Actinidia34620 Actinidia chinensis
Actinidia35962 Actinidia chinensis
Actinidia40006 Actinidia chinensis
Ah.06g195300 Amaranthus hybridus
AL1G15800 Arabidopsis lyrata
AL4G26850 Arabidopsis lyrata
AL5G34840 Arabidopsis lyrata
Aqoxy2G04110 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4L1T75 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0MJIY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U2W2LI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V6QQET Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WZJ3TK Arachis hypogaea
AT1G05860 Arabidopsis thaliana
AT2G31600 Arabidopsis thaliana
AT3G53860 Arabidopsis thaliana
ATR0332G090 Amborella trichopoda
ATR0743G205 Amborella trichopoda
Atru.chr12.1650 Acer truncatum
Atru.chr3.1569 Acer truncatum
Atru.chr3.1588 Acer truncatum
AUR62000275 Chenopodium quinoa
AUR62002600 Chenopodium quinoa
AUR62006622 Chenopodium quinoa
AUR62030021 Chenopodium quinoa
BcaB04g17700 Brassica carinata
BcaC02g11267 Brassica carinata
BcaC05g24329 Brassica carinata
BcaC05g24331 Brassica carinata
BcaC09g49846 Brassica carinata
BolC3t14437H Brassica oleracea
BolC4t23385H Brassica oleracea
BolC5t29196H Brassica oleracea
BolC8t47019H Brassica oleracea
BraA03t11043Z Brassica rapa
BraA08t35529Z Brassica rapa
BraA10t42720Z Brassica rapa
C03p20870 Brassica napus
C04p18280 Brassica napus
C05p04220 Brassica napus
C08p02270 Brassica napus
CAN.G169.2 Capsicum annuum
CAN.G282.52 Capsicum annuum
CANSAT01G1641 Cannabis sativa
CARHR005400 Cardamine hirsuta
CARHR125250 Cardamine hirsuta
Carub.0001s0522 Capsella rubella
Carub.0004s1290 Capsella rubella
Ca_08244_v3 Cicer arietinum L.
Ca_11405_v3 Cicer arietinum L.
CBR_g20294 Chara braunii
Cc09_g04100 Coffea canephora
CDE02G3933 Ceratophyllum demersum
CDE08G0700 Ceratophyllum demersum
Cfa006218 Carpinus fangiana
Cfa015771 Carpinus fangiana
Ciclev10012589m.g Citrus clementina
Ciclev10013985m.g Citrus clementina
Ciclev10021620m.g Citrus clementina
Ciclev10024271m.g Citrus clementina
CiPaw.02G056200 Carya illinoinensis
CiPaw.07G085200 Carya illinoinensis
ClCG09G009140 Citrullus lanatus
COL.COLO4_20519 Corchorus olitorius
Cpa.g.sc71.18 Carica papaya
CsaV3_7G025800 Cucumis sativus L.
CSS0004883 Camellia sinensis var. sinensis
CSS0012520 Camellia sinensis var. sinensis
CSS0028064 Camellia sinensis var. sinensis
DCAR_008984 Daucus carota
DCAR_023903 Daucus carota
Dinv20714 Davidia involucrata
Dinv22647 Davidia involucrata
Dinv29078 Davidia involucrata
Duzib093G1636 Durio zibethinus
Duzib106G1027 Durio zibethinus
ECA232G0294 Erigeron canadensis
ECA233G4617 Erigeron canadensis
EL10Ac4g10021 Beta vulgaris
Eucgr.H00413 Eucalyptus grandis
FAN06G1791 Fragaria x ananassa
FAN07G0836 Fragaria x ananassa
FAN15G2890 Fragaria x ananassa
FAN24G1951 Fragaria x ananassa
FvH4_2g08280 Fragaria vesca
FvH4_4g11360 Fragaria vesca
Glyma.02G068400 Glycine max
Glyma.02G068600 Glycine max
Glyma.16G149700 Glycine max
Glyma.16G149900 Glycine max
Gohir.A08G074050 Gossypium hirsutum
Gohir.A09G168900 Gossypium hirsutum
Gohir.A10G145300 Gossypium hirsutum
Gohir.D08G083250 Gossypium hirsutum
Gohir.D09G164600 Gossypium hirsutum
Gohir.D10G121700 Gossypium hirsutum
Gorai.004G087400 Gossypium raimondii
Gorai.006G186400 Gossypium raimondii
Gorai.011G133800 Gossypium raimondii
GSVIVG01003749001 Vitis vinifera
GSVIVG01003753001 Vitis vinifera
GSVIVG01010732001 Vitis vinifera
HanXRQChr07g0186141 Helianthus annuus
HanXRQChr16g0511871 Helianthus annuus
HanXRQChr16g0517981 Helianthus annuus
Haze_00724 Corylus avellana
Haze_00730 Corylus avellana
Haze_04605 Corylus avellana
Hma1.2p1_0597F.1_g186520 Hydrangea macrophylla
Hma1.2p1_1961F.1_g309090 Hydrangea macrophylla
HPP92_004557 Vanilla planifolia
Hund21930 Selenicereus undatus
Hund22010 Selenicereus undatus
Lalb_Chr14g0364251 Lupinus albus
Lalb_Chr21g0307621 Lupinus albus
Lalb_Chr21g0317031 Lupinus albus
Lalb_Chr24g0403041 Lupinus albus
Lj1g0025540 Lotus japonicus
Lj5g0018615 Lotus japonicus
Lj6A60G38 Lonicera japonica
Lsat_1_v5_gn_0_14541 Lactuca sativa
Lsat_1_v5_gn_6_55141 Lactuca sativa
Manes.04G040400 Manihot esculenta
Manes.11G117400 Manihot esculenta
Mapoly0096s0022 Marchantia polymorpha
MBI08_g01803_MAGBIO Magnolia biondii
MBI11_g35029_MAGBIO Magnolia biondii
MCO15G601 Micromonas commoda
MD04G1037400 Malus domestica
MD04G1037500 Malus domestica
MD04G1188100 Malus domestica
Medtr1g116580 Medicago truncatula
Medtr7g084890 Medicago truncatula
MELO3C012775.2 Cucumis melo
Migut.F01844 Erythranthe guttata
MSTRG.8193 Avicennia marina
Nitab4.5_0000069g0240 Nicotiana tabacum
Nitab4.5_0000069g0250 Nicotiana tabacum
Nitab4.5_0004301g0060 Nicotiana tabacum
Nn1g09739 Nelumbo nucifera
Oeu001216.1 Olea europaea
Oeu034705.1 Olea europaea
Os01g0556001 Oryza sativa ssp. japonica
Os05g0304100 Oryza sativa ssp. japonica
Os12g0231100 Oryza sativa ssp. japonica
Peaxi162Scf00021g00202 Petunia axillaris
Peaxi162Scf00021g00205 Petunia axillaris
Peaxi162Scf00563g00312 Petunia axillaris
PGR083G1968 Punica granatum
PGSC0003DMG400021952 Solanum tuberosum
PGSC0003DMG401016399 Solanum tuberosum
PGSC0003DMG402016399 Solanum tuberosum
Phvul.004G067500 Phaseolus vulgaris
Phvul.004G067600 Phaseolus vulgaris
Potri.007G126300 Populus trichocarpa
Potri.010G180200 Populus trichocarpa
Potri.017G035200 Populus trichocarpa
Pp3c19_22960 Physcomitrium patens
Prupe.1G186800 Prunus persica
Psat0ss1917g0040 Pisum sativum
Psat6g062160 Pisum sativum
Psat6g241600 Pisum sativum
PSO017G3277 Papaver somniferum
PSO675G5052 Papaver somniferum
QL10p047472 Quercus lobata
RcHm_v2.0_Chr4g0407911 Rosa chinensis
RcHm_v2.0_Chr6g0263161 Rosa chinensis
RcHm_v2.0_Chr6g0273581 Rosa chinensis
Rhsim05G0164400 Rhododendron simsii
Rhsim09G0030200 Rhododendron simsii
Sabra07G0102400 Salix brachista
Sabra10G0138100 Salix brachista
Sabra17G0021200 Salix brachista
Sabra17G0022100 Salix brachista
Sc09g0001350 Simmondsia chinensis
Sc19g0002190 Simmondsia chinensis
Sed0006305 Sechium edule
Sed0006629 Sechium edule
Sed0013889 Sechium edule
SEGI_08161 Sequoiadendron giganteum
SEGI_35784 Sequoiadendron giganteum
SEGI_36339 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33204 Striga asiatica
SGA_v2.0_scaffold340G49312 Striga asiatica
SHI29168 Sapria himalayana
SMO147G0224 Selaginella moellendorffii
Solyc01g008190.4 Solanum lycopersicum
Solyc01g008200.3 Solanum lycopersicum
Sopen01g003730 Solanum pennellii
Sp1g04680 Schrenkiella parvula
Sp4g14000 Schrenkiella parvula
TAR362G1330 Trochodendron aralioides
THA.LOC104815863 Tarenaya hassleriana
THA.LOC104826191 Tarenaya hassleriana
Thecc.05G003000 Theobroma cacao
Thecc.05G110700 Theobroma cacao
Thhalv10008336m.g Eutrema salsugineum
Thhalv10017019m.g Eutrema salsugineum
TPR.G31054 Trifolium pratense
TPR.G40609 Trifolium pratense
TWI18G1429 Tripterygium wilfordii
TWI36G0408 Tripterygium wilfordii
TWI75G0623 Tripterygium wilfordii
unitig_699.g19736 Utricularia gibba
vmacro01066 Vaccinium macrocarpon
vmacro14059 Vaccinium macrocarpon
vmacro19582 Vaccinium macrocarpon
VMungo0464G1154 Vigna mungo
VMungo0464G1958 Vigna mungo
Zm00001eb235220 Zea mays
Zm00001eb284530 Zea mays
Zm00001eb351080 Zea mays

User provided reference genes

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