Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p27740 Brassica napus
A04p27750 Brassica napus
A05p09620 Brassica napus
A09p45800 Brassica napus
Aa31LG10G7720 Aethionema arabicum
Aa31LG5G21340 Aethionema arabicum
Actinidia05423 Actinidia chinensis
Actinidia07925 Actinidia chinensis
Actinidia31269 Actinidia chinensis
Ah.08g210540 Amaranthus hybridus
Ah.15g090850 Amaranthus hybridus
AL4G32320 Arabidopsis lyrata
AL5G33470 Arabidopsis lyrata
Aqoxy2G01158 Aquilegia oxysepala
Aqoxy4G02769 Aquilegia oxysepala
AT2G36220 Arabidopsis thaliana
AT3G52710 Arabidopsis thaliana
ATR0776G084 Amborella trichopoda
Atru.chr8.1495 Acer truncatum
AUR62006190 Chenopodium quinoa
AUR62028515 Chenopodium quinoa
BcaB01g00349 Brassica carinata
BcaB02g09375 Brassica carinata
BcaB06g28923 Brassica carinata
BcaC02g07620 Brassica carinata
BcaC02g09232 Brassica carinata
BcaC02g11724 Brassica carinata
BcaC07g39636 Brassica carinata
BolC4t22840H Brassica oleracea
BolC4t25610H Brassica oleracea
BolC4t28004H Brassica oleracea
BolC8t50411H Brassica oleracea
BraA04t18268Z Brassica rapa
BraA05t19916Z Brassica rapa
BraA09t40041Z Brassica rapa
C04p11930 Brassica napus
C04p40300 Brassica napus
C04p65240 Brassica napus
C04p65250 Brassica napus
C08p27990 Brassica napus
CANSAT64G2974 Cannabis sativa
CARHR130460 Cardamine hirsuta
CARHR162580 Cardamine hirsuta
Carub.0004s1798 Capsella rubella
Carub.0005s1916 Capsella rubella
Ca_00900_v3 Cicer arietinum L.
Ca_08987_v3 Cicer arietinum L.
Cc06_g05890 Coffea canephora
CDE02G4274 Ceratophyllum demersum
CDE08G0328 Ceratophyllum demersum
Cfa016615 Carpinus fangiana
Ciclev10012256m.g Citrus clementina
CiPaw.09G014800 Carya illinoinensis
CiPaw.10G010300 Carya illinoinensis
ClCG04G010080 Citrullus lanatus
ClCG10G018920 Citrullus lanatus
COL.COLO4_29723 Corchorus olitorius
Cpa.g.sc5.12 Carica papaya
CsaV3_3G037330 Cucumis sativus L.
CsaV3_6G040710 Cucumis sativus L.
CSS0009772 Camellia sinensis var. sinensis
CSS0031410 Camellia sinensis var. sinensis
CSS0050344 Camellia sinensis var. sinensis
DCAR_009168 Daucus carota
DCAR_013394 Daucus carota
DCAR_013395 Daucus carota
DCAR_020744 Daucus carota
DCAR_028475 Daucus carota
Dinv01029 Davidia involucrata
Dinv04999 Davidia involucrata
Dinv10925 Davidia involucrata
Dinv11834 Davidia involucrata
Dinv13101 Davidia involucrata
Dinv21200 Davidia involucrata
Dinv31692 Davidia involucrata
Duzib093G1338 Durio zibethinus
Duzib106G1991 Durio zibethinus
Duzib128G1370 Durio zibethinus
ECA232G3979 Erigeron canadensis
ECA233G4679 Erigeron canadensis
ECA247G2190 Erigeron canadensis
ECA248G2961 Erigeron canadensis
EL10Ac7g16909 Beta vulgaris
Eucgr.A02660 Eucalyptus grandis
Eucgr.K02030 Eucalyptus grandis
FAN02G0223 Fragaria x ananassa
FAN05G0400 Fragaria x ananassa
FAN05G1773 Fragaria x ananassa
FAN09G1837 Fragaria x ananassa
FAN14G1758 Fragaria x ananassa
FvH4_6g18850 Fragaria vesca
Glyma.03G196500 Glycine max
Glyma.10G073600 Glycine max
Glyma.13G154300 Glycine max
Glyma.19G194957 Glycine max
Gohir.A01G206000 Gossypium hirsutum
Gohir.A04G062300 Gossypium hirsutum
Gohir.A09G139500 Gossypium hirsutum
Gohir.D01G195400 Gossypium hirsutum
Gohir.D04G099100 Gossypium hirsutum
Gohir.D09G135100 Gossypium hirsutum
Gorai.002G239600 Gossypium raimondii
Gorai.006G155000 Gossypium raimondii
Gorai.009G401500 Gossypium raimondii
HanXRQChr01g0010381 Helianthus annuus
HanXRQChr04g0109331 Helianthus annuus
HanXRQChr04g0109341 Helianthus annuus
HanXRQChr05g0133631 Helianthus annuus
HanXRQChr08g0229891 Helianthus annuus
Haze_19619 Corylus avellana
Hma1.2p1_0820F.1_g223870 Hydrangea macrophylla
Hma1.2p1_0874F.1_g231330 Hydrangea macrophylla
HPP92_006349 Vanilla planifolia
HPP92_011492 Vanilla planifolia
Lalb_Chr02g0154921 Lupinus albus
Lalb_Chr20g0111681 Lupinus albus
Lalb_Chr25g0288311 Lupinus albus
Lj1g0000022 Lotus japonicus
Lj5g0002620 Lotus japonicus
Lsat_1_v5_gn_0_7921 Lactuca sativa
Lsat_1_v5_gn_5_164981 Lactuca sativa
Lsat_1_v5_gn_8_24181 Lactuca sativa
Lsat_1_v5_gn_8_77361 Lactuca sativa
Lsat_1_v5_gn_9_20601 Lactuca sativa
Manes.08G025900 Manihot esculenta
Manes.09G054800 Manihot esculenta
MBI11_g26446_MAGBIO Magnolia biondii
MD12G1024700 Malus domestica
MD14G1023600 Malus domestica
Medtr1g059890 Medicago truncatula
Medtr7g104725 Medicago truncatula
MELO3C009477.2 Cucumis melo
MELO3C024549.2 Cucumis melo
Migut.F00874 Erythranthe guttata
Migut.J01028 Erythranthe guttata
Migut.L01785 Erythranthe guttata
MSTRG.10370 Avicennia marina
Nitab4.5_0000692g0050 Nicotiana tabacum
Nitab4.5_0001933g0030 Nicotiana tabacum
Nitab4.5_0005744g0010 Nicotiana tabacum
Nitab4.5_0009769g0010 Nicotiana tabacum
Nitab4.5_0009833g0020 Nicotiana tabacum
Nitab4.5_0013140g0010 Nicotiana tabacum
Nitab4.5_0014515g0010 Nicotiana tabacum
Nn2g14171 Nelumbo nucifera
Nn6g34887 Nelumbo nucifera
Oeu012633.1 Olea europaea
Oeu017682.1 Olea europaea
Oeu024810.1 Olea europaea
Oeu025672.1 Olea europaea
Oeu047203.1 Olea europaea
Oeu047862.1 Olea europaea
Oeu056878.1 Olea europaea
Os01g0860900 Oryza sativa ssp. japonica
Os11g0153300 Oryza sativa ssp. japonica
Peaxi162Scf00173g00210 Petunia axillaris
Peaxi162Scf00404g00061 Petunia axillaris
Peaxi162Scf00519g00066 Petunia axillaris
PGR004G2661 Punica granatum
PGR142G1499 Punica granatum
PGSC0003DMG400008878 Solanum tuberosum
PGSC0003DMG400023494 Solanum tuberosum
PGSC0003DMG400023971 Solanum tuberosum
PGSC0003DMG400028163 Solanum tuberosum
Phvul.001G190700 Phaseolus vulgaris
Phvul.007G152700 Phaseolus vulgaris
Potri.006G212800 Populus trichocarpa
Potri.016G079500 Populus trichocarpa
Prupe.7G109200 Prunus persica
Psat3g032560 Pisum sativum
Psat6g080520 Pisum sativum
PSO339G1651 Papaver somniferum
PSO384G0491 Papaver somniferum
QL07p038927 Quercus lobata
Rhsim04G0132000 Rhododendron simsii
Sabra06G0163800 Salix brachista
Sabra16G0085400 Salix brachista
Sabra16G0087500 Salix brachista
SalBow3G3510 Salvia bowleyana
SalBow3G4004 Salvia bowleyana
SalBow5G1418 Salvia bowleyana
SalBow6G1960 Salvia bowleyana
Sc20g0006320 Simmondsia chinensis
Sed0002377 Sechium edule
Sed0010191 Sechium edule
Sed0022451 Sechium edule
SGA_v2.0_scaffold13G06709 Striga asiatica
SGA_v2.0_scaffold184G39967 Striga asiatica
SGA_v2.0_scaffold35G14064 Striga asiatica
SHI12239 Sapria himalayana
Solyc05g055270.1 Solanum lycopersicum
Solyc09g009840.1 Solanum lycopersicum
Solyc10g083330.1 Solanum lycopersicum
Solyc11g006900.1 Solanum lycopersicum
Sopen05g033710 Solanum pennellii
Sopen09g004600 Solanum pennellii
Sopen10g032810 Solanum pennellii
Sopen11g002810 Solanum pennellii
Sp4g18440 Schrenkiella parvula
Sp5g09630 Schrenkiella parvula
TAR369G0615 Trochodendron aralioides
TAR633G0951 Trochodendron aralioides
THA.LOC104804904 Tarenaya hassleriana
THA.LOC104827508 Tarenaya hassleriana
Thecc.05G090100 Theobroma cacao
Thhalv10011162m.g Eutrema salsugineum
Thhalv10017798m.g Eutrema salsugineum
TPR.G23344 Trifolium pratense
TPR.G9897 Trifolium pratense
TWI53G0306 Tripterygium wilfordii
TWI74G1218 Tripterygium wilfordii
unitig_578.g16020 Utricularia gibba
unitig_578.g16021 Utricularia gibba
unitig_8.g4968 Utricularia gibba
VMungo0720G0359 Vigna mungo
VMungo1383G1679 Vigna mungo
Zm00001eb147090 Zea mays
Zm00001eb366850 Zea mays

User provided reference genes

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