Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31sc380G100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3215 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.456 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.502 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5591 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5596 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1847 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.334 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4943 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2696 Anthoceros agrestis
Actinidia15271 Actinidia chinensis
Actinidia21153 Actinidia chinensis
Actinidia24933 Actinidia chinensis
Actinidia30710 Actinidia chinensis
Ah.02g111490 Amaranthus hybridus
Ah.02g111620 Amaranthus hybridus
Ah.05g168890 Amaranthus hybridus
AL1G54090 Arabidopsis lyrata
AL4G21430 Arabidopsis lyrata
Aqoxy5G00353 Aquilegia oxysepala
Aqoxy6G00887 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.20NWG8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2W7RYZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B2TI6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YVXW4C Arachis hypogaea
AT1G47720 Arabidopsis thaliana
ATR0665G417 Amborella trichopoda
ATR0767G196 Amborella trichopoda
Atru.chr13.610 Acer truncatum
Atru.chr5.1560 Acer truncatum
AUR62011944 Chenopodium quinoa
AUR62031374 Chenopodium quinoa
AUR62032259 Chenopodium quinoa
BcaB01g02650 Brassica carinata
BcaB02g11245 Brassica carinata
BcaB04g17669 Brassica carinata
BcaB05g24229 Brassica carinata
BcaB07g30306 Brassica carinata
BcaB08g35794 Brassica carinata
CAN.G1072.3 Capsicum annuum
CAN.G371.60 Capsicum annuum
CANSAT01G1651 Cannabis sativa
CANSAT21G0722 Cannabis sativa
CARHR037330 Cardamine hirsuta
Carub.0001s3658 Capsella rubella
Ca_09717_v3 Cicer arietinum L.
Ca_13312_v3 Cicer arietinum L.
Ca_30258_v3 Cicer arietinum L.
CBR_g19562 Chara braunii
Cc11_g07070 Coffea canephora
CDE07G1157 Ceratophyllum demersum
Cfa002322 Carpinus fangiana
Cfa013576 Carpinus fangiana
Ciclev10002154m.g Citrus clementina
Ciclev10021384m.g Citrus clementina
CiPaw.04G181600 Carya illinoinensis
CiPaw.16G050200 Carya illinoinensis
ClCG08G015560 Citrullus lanatus
ClCG09G007510 Citrullus lanatus
COL.COLO4_06080 Corchorus olitorius
COL.COLO4_26441 Corchorus olitorius
Cpa.g.sc52.95 Carica papaya
CsaV3_2G028210 Cucumis sativus L.
CsaV3_7G027620 Cucumis sativus L.
CSS0020615 Camellia sinensis var. sinensis
CSS0040327 Camellia sinensis var. sinensis
CSS0046317 Camellia sinensis var. sinensis
DCAR_002687 Daucus carota
DCAR_020938 Daucus carota
Dinv14076 Davidia involucrata
Dinv34566 Davidia involucrata
Dinv39344 Davidia involucrata
Duzib116G0569 Durio zibethinus
Duzib133G1186 Durio zibethinus
Duzib211G0146 Durio zibethinus
ECA247G0773 Erigeron canadensis
ECA248G3289 Erigeron canadensis
EL10Ac1g01814 Beta vulgaris
EL10Ac5g10472 Beta vulgaris
Eucgr.B01490 Eucalyptus grandis
Eucgr.F02382 Eucalyptus grandis
FAN15G1244 Fragaria x ananassa
FAN15G1917 Fragaria x ananassa
FAN20G1494 Fragaria x ananassa
FAN20G2661 Fragaria x ananassa
FAN24G1535 Fragaria x ananassa
FAN27G2804 Fragaria x ananassa
FAN27G2883 Fragaria x ananassa
FvH4_2g22540 Fragaria vesca
FvH4_2g40730 Fragaria vesca
Glyma.02G142700 Glycine max
Glyma.10G031700 Glycine max
Glyma.14G079700 Glycine max
Glyma.14G079900 Glycine max
Gohir.A05G199800 Gossypium hirsutum
Gohir.A07G208800 Gossypium hirsutum
Gohir.D05G202800 Gossypium hirsutum
Gohir.D07G214700 Gossypium hirsutum
Gorai.001G242700 Gossypium raimondii
Gorai.009G208700 Gossypium raimondii
GSVIVG01000719001 Vitis vinifera
GSVIVG01009574001 Vitis vinifera
HanXRQChr01g0006861 Helianthus annuus
HanXRQChr02g0037121 Helianthus annuus
Haze_22194 Corylus avellana
Haze_24527 Corylus avellana
Hma1.2p1_0337F.1_g129250 Hydrangea macrophylla
Hma1.2p1_1208F.1_g267070 Hydrangea macrophylla
HPP92_018437 Vanilla planifolia
HPP92_018722 Vanilla planifolia
Hund02877 Selenicereus undatus
Hund09568 Selenicereus undatus
Hund17611 Selenicereus undatus
Hund31221 Selenicereus undatus
Lalb_Chr02g0142441 Lupinus albus
Lalb_Chr24g0399181 Lupinus albus
Lj1A57T48 Lonicera japonica
Lj2A1160T38 Lonicera japonica
Lj4A49T80 Lonicera japonica
Lj5g0023638 Lotus japonicus
Lj5g0023909 Lotus japonicus
Lj5P91T46 Lonicera japonica
Lsat_1_v5_gn_1_19080 Lactuca sativa
Lsat_1_v5_gn_5_186781 Lactuca sativa
Manes.05G084100 Manihot esculenta
Manes.18G034800 Manihot esculenta
Mapoly0027s0128 Marchantia polymorpha
MBI16_g24707_MAGBIO Magnolia biondii
MD05G1206000 Malus domestica
MD10G1193100 Malus domestica
MD15G1035700 Malus domestica
Medtr1g021080 Medicago truncatula
Medtr1g070840 Medicago truncatula
MELO3C010897.2 Cucumis melo
MELO3C015761.2 Cucumis melo
Migut.C00617 Erythranthe guttata
Migut.N02181 Erythranthe guttata
MSTRG.25116 Avicennia marina
MSTRG.28027 Avicennia marina
Nitab4.5_0000068g0300 Nicotiana tabacum
Nitab4.5_0000187g0150 Nicotiana tabacum
Nitab4.5_0000187g0180 Nicotiana tabacum
Nitab4.5_0001556g0080 Nicotiana tabacum
Nitab4.5_0011646g0010 Nicotiana tabacum
Nn1g02558 Nelumbo nucifera
Nn5g29345 Nelumbo nucifera
Oeu002277.1 Olea europaea
Oeu009567.1 Olea europaea
Os03g0611700 Oryza sativa ssp. japonica
Os03g0633900 Oryza sativa ssp. japonica
Peaxi162Scf00049g02222 Petunia axillaris
Peaxi162Scf01092g00113 Petunia axillaris
PGR031G0001 Punica granatum
PGSC0003DMG400007998 Solanum tuberosum
PGSC0003DMG400019333 Solanum tuberosum
Phvul.001G019000 Phaseolus vulgaris
Phvul.007G176800 Phaseolus vulgaris
Potri.002G045100 Populus trichocarpa
Potri.002G129166 Populus trichocarpa
Potri.005G218100 Populus trichocarpa
Pp3c21_1470 Physcomitrium patens
Prupe.1G389600 Prunus persica
Prupe.8G232500 Prunus persica
Psat0s1875g0120 Pisum sativum
Psat6g011160 Pisum sativum
PSO210G4773 Papaver somniferum
PSO210G6998 Papaver somniferum
PSO541G2245 Papaver somniferum
PSO675G0858 Papaver somniferum
QL02p006209 Quercus lobata
QL12p042654 Quercus lobata
RcHm_v2.0_Chr6g0289591 Rosa chinensis
RcHm_v2.0_Chr6g0299861 Rosa chinensis
Rhsim01G0270000 Rhododendron simsii
Rhsim06G0033100 Rhododendron simsii
Rhsim06G0042100 Rhododendron simsii
Rhsim06G0042200 Rhododendron simsii
Sabra02G0036200 Salix brachista
Sabra05G0167200 Salix brachista
Sabra14G0025400 Salix brachista
SalBow3G4550 Salvia bowleyana
SalBow7G3304 Salvia bowleyana
Sc05g0001020 Simmondsia chinensis
Sc15g0006470 Simmondsia chinensis
Sed0004930 Sechium edule
Sed0005298 Sechium edule
Sed0005343 Sechium edule
SEGI_15137 Sequoiadendron giganteum
SEGI_19679 Sequoiadendron giganteum
SEGI_32519 Sequoiadendron giganteum
SEGI_33466 Sequoiadendron giganteum
SGA_v2.0_scaffold230G43372 Striga asiatica
SGA_v2.0_scaffold81G26059 Striga asiatica
SHI05957 Sapria himalayana
Solyc04g079410.3 Solanum lycopersicum
Solyc09g065840.3 Solanum lycopersicum
Sopen04g033020 Solanum pennellii
Sopen09g027630 Solanum pennellii
TAR625G0703 Trochodendron aralioides
TAR629G0134 Trochodendron aralioides
TAR636G3096 Trochodendron aralioides
THA.LOC104806883 Tarenaya hassleriana
Thecc.01G267800 Theobroma cacao
Thecc.08G015000 Theobroma cacao
TPR.G13680 Trifolium pratense
TPR.G35728 Trifolium pratense
TPR.G39062 Trifolium pratense
TWI12G0608 Tripterygium wilfordii
TWI18G1277 Tripterygium wilfordii
TWI56G1072 Tripterygium wilfordii
unitig_578.g16421 Utricularia gibba
unitig_748.g7780 Utricularia gibba
unitig_748.g7781 Utricularia gibba
vmacro14875 Vaccinium macrocarpon
vmacro21575 Vaccinium macrocarpon
VMungo0647G2206 Vigna mungo
VMungo0720G2958 Vigna mungo
Zm00001eb051050 Zea mays
Zm00001eb051490 Zea mays
Zm00001eb218850 Zea mays

User provided reference genes

Program Settings