Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p38650 Brassica napus
A05p35290 Brassica napus
A06p13320 Brassica napus
Aa31LG4G2740 Aethionema arabicum
Aa31LG7G2190 Aethionema arabicum
Aa31LG8G1410 Aethionema arabicum
Actinidia21811 Actinidia chinensis
Actinidia21812 Actinidia chinensis
Actinidia21813 Actinidia chinensis
Actinidia24443 Actinidia chinensis
Actinidia24444 Actinidia chinensis
Actinidia24445 Actinidia chinensis
Actinidia26009 Actinidia chinensis
Actinidia31161 Actinidia chinensis
Actinidia31162 Actinidia chinensis
Ah.08g217080 Amaranthus hybridus
Ah.08g217100 Amaranthus hybridus
AL1G29630 Arabidopsis lyrata
AL2G32070 Arabidopsis lyrata
AL3G26410 Arabidopsis lyrata
AL8G26820 Arabidopsis lyrata
Aqoxy7G00988 Aquilegia oxysepala
Aqoxy7G04085 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E7RSE6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XWXJ6Y Arachis hypogaea
AT1G17360 Arabidopsis thaliana
AT1G72410 Arabidopsis thaliana
AT3G14172 Arabidopsis thaliana
ATR0681G027 Amborella trichopoda
Atru.chr1.4104 Acer truncatum
AUR62001437 Chenopodium quinoa
AUR62009929 Chenopodium quinoa
BcaB03g13005 Brassica carinata
BcaB04g18822 Brassica carinata
BcaC01g03955 Brassica carinata
BcaC07g38848 Brassica carinata
BcaC07g38849 Brassica carinata
BcaC07g38850 Brassica carinata
BolC3t16941H Brassica oleracea
BolC5t30284H Brassica oleracea
BolC5t34024H Brassica oleracea
BolC8t49412H Brassica oleracea
BolC8t49417H Brassica oleracea
BraA03t13012Z Brassica rapa
BraA05t22339Z Brassica rapa
BraA06t24485Z Brassica rapa
C03p46760 Brassica napus
C05p15790 Brassica napus
C05p53470 Brassica napus
C08p17860 Brassica napus
CAN.G1243.12 Capsicum annuum
CAN.G1743.4 Capsicum annuum
CAN.G862.31 Capsicum annuum
CANSAT56G2272 Cannabis sativa
CARHR017960 Cardamine hirsuta
CARHR065300 Cardamine hirsuta
CARHR089040 Cardamine hirsuta
Carub.0001s1712 Capsella rubella
Carub.0001s1713 Capsella rubella
Carub.0002s1925 Capsella rubella
Carub.0003s1377 Capsella rubella
Ca_04810_v3 Cicer arietinum L.
Ca_30858_v3 Cicer arietinum L.
Cc04_g00950 Coffea canephora
CDE04G0552 Ceratophyllum demersum
CDE06G1187 Ceratophyllum demersum
Cfa003497 Carpinus fangiana
CiPaw.01G214800 Carya illinoinensis
CiPaw.02G133400 Carya illinoinensis
ClCG09G001190 Citrullus lanatus
COL.COLO4_30823 Corchorus olitorius
Cpa.g.sc25.159 Carica papaya
Cpa.g.sc25.160 Carica papaya
Cpa.g.sc25.161 Carica papaya
Cpa.g.sc25.162 Carica papaya
CsaV3_7G034180 Cucumis sativus L.
CSS0035296 Camellia sinensis var. sinensis
CSS0039706 Camellia sinensis var. sinensis
DCAR_022658 Daucus carota
DCAR_022659 Daucus carota
Dinv20402 Davidia involucrata
Dinv37843 Davidia involucrata
Duzib160G0101 Durio zibethinus
Duzib192G0537 Durio zibethinus
ECA234G0967 Erigeron canadensis
ECA247G0028 Erigeron canadensis
EL10Ac7g16452 Beta vulgaris
Eucgr.F02477 Eucalyptus grandis
Eucgr.J02614 Eucalyptus grandis
FAN02G2113 Fragaria x ananassa
FAN02G2594 Fragaria x ananassa
FAN05G3795 Fragaria x ananassa
FAN09G1628 Fragaria x ananassa
FAN09G2883 Fragaria x ananassa
FAN14G2411 Fragaria x ananassa
FvH4_6g35280 Fragaria vesca
Glyma.07G042700 Glycine max
Glyma.16G011100 Glycine max
Gohir.A05G138500 Gossypium hirsutum
Gohir.A10G052001 Gossypium hirsutum
Gohir.D05G140700 Gossypium hirsutum
Gohir.D10G053600 Gossypium hirsutum
Gohir.D10G053650 Gossypium hirsutum
Gorai.009G144900 Gossypium raimondii
Gorai.011G057200 Gossypium raimondii
GSVIVG01016705001 Vitis vinifera
HanXRQChr09g0277151 Helianthus annuus
HanXRQChr09g0277161 Helianthus annuus
HanXRQChr10g0311901 Helianthus annuus
Haze_16085 Corylus avellana
Hma1.2p1_0229F.1_g096860 Hydrangea macrophylla
HPP92_005872 Vanilla planifolia
HPP92_010944 Vanilla planifolia
Hund05716 Selenicereus undatus
Hund18658 Selenicereus undatus
Lalb_Chr04g0253771 Lupinus albus
Lalb_Chr17g0343411 Lupinus albus
Lalb_Chr18g0044931 Lupinus albus
Lj3g0022220 Lotus japonicus
Lj5C32G3 Lonicera japonica
Lj9A536T75 Lonicera japonica
Lsat_1_v5_gn_3_100320 Lactuca sativa
Lsat_1_v5_gn_4_100020 Lactuca sativa
Lsat_1_v5_gn_4_91240 Lactuca sativa
Lsat_1_v5_gn_5_136800 Lactuca sativa
Lsat_1_v5_gn_9_105620 Lactuca sativa
Manes.04G148600 Manihot esculenta
Manes.11G015500 Manihot esculenta
MBI19_g38005_MAGBIO Magnolia biondii
MD09G1177000 Malus domestica
MD17G1149300 Malus domestica
Medtr2g435670 Medicago truncatula
Medtr8g022280 Medicago truncatula
MELO3C024328.2 Cucumis melo
Migut.D00921 Erythranthe guttata
Migut.I01114 Erythranthe guttata
MSTRG.10927 Avicennia marina
MSTRG.22532 Avicennia marina
MSTRG.4542 Avicennia marina
Nitab4.5_0000357g0030 Nicotiana tabacum
Nitab4.5_0000357g0040 Nicotiana tabacum
Nitab4.5_0002072g0020 Nicotiana tabacum
Nitab4.5_0002716g0080 Nicotiana tabacum
Nitab4.5_0003137g0040 Nicotiana tabacum
Nitab4.5_0006425g0050 Nicotiana tabacum
Nitab4.5_0011227g0020 Nicotiana tabacum
Nn5g28170 Nelumbo nucifera
Nn6g35644 Nelumbo nucifera
Nn8g38549 Nelumbo nucifera
Oeu000386.4 Olea europaea
Oeu006740.1 Olea europaea
Oeu008519.1 Olea europaea
Oeu026450.1 Olea europaea
Os07g0616000 Oryza sativa ssp. japonica
Peaxi162Scf00038g01937 Petunia axillaris
Peaxi162Scf00207g01540 Petunia axillaris
PGR102G2198 Punica granatum
PGR119G1216 Punica granatum
PGSC0003DMG400002567 Solanum tuberosum
PGSC0003DMG400004896 Solanum tuberosum
PGSC0003DMG400022906 Solanum tuberosum
PGSC0003DMG400028856 Solanum tuberosum
Phvul.010G126300 Phaseolus vulgaris
Potri.001G164900 Populus trichocarpa
Potri.003G070400 Populus trichocarpa
Prupe.3G036100 Prunus persica
Psat4g167440 Pisum sativum
PSO104G0199 Papaver somniferum
PSO223G0045 Papaver somniferum
PSO386G0257 Papaver somniferum
PSO421G0205 Papaver somniferum
QL05p003152 Quercus lobata
RcHm_v2.0_Chr2g0146661 Rosa chinensis
Rhsim08G0241800 Rhododendron simsii
Rhsim12G0211900 Rhododendron simsii
Sabra01G0128100 Salix brachista
Sabra03G0041600 Salix brachista
SalBow6G4788 Salvia bowleyana
SalBow7G3082 Salvia bowleyana
Sc15g0000680 Simmondsia chinensis
Sed0009174 Sechium edule
Sed0021543 Sechium edule
SEGI_13597 Sequoiadendron giganteum
SEGI_13746 Sequoiadendron giganteum
SEGI_20464 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02088 Striga asiatica
SGA_v2.0_scaffold68G22843 Striga asiatica
SHI25216 Sapria himalayana
Solyc03g122040.4 Solanum lycopersicum
Solyc06g063050.4 Solanum lycopersicum
Solyc12g049510.3 Solanum lycopersicum
Solyc12g049520.2 Solanum lycopersicum
Sopen03g040840 Solanum pennellii
Sopen06g022500 Solanum pennellii
Sopen12g024000 Solanum pennellii
Sp1g15500 Schrenkiella parvula
Sp3g12420 Schrenkiella parvula
SpUn0033_0050 Schrenkiella parvula
TAR383G0285 Trochodendron aralioides
TAR624G0142 Trochodendron aralioides
TAR624G0693 Trochodendron aralioides
TAR624G1127 Trochodendron aralioides
TAR626G1887 Trochodendron aralioides
THA.LOC104808065 Tarenaya hassleriana
THA.LOC104810377 Tarenaya hassleriana
THA.LOC104815615 Tarenaya hassleriana
THA.LOC104822667 Tarenaya hassleriana
Thecc.06G126200 Theobroma cacao
Thhalv10006648m.g Eutrema salsugineum
Thhalv10019917m.g Eutrema salsugineum
TWI14G0160 Tripterygium wilfordii
TWI23G1014 Tripterygium wilfordii
TWI59G0300 Tripterygium wilfordii
unitig_26.g8922 Utricularia gibba
unitig_26.g8923 Utricularia gibba
unitig_749.g14039 Utricularia gibba
unitig_749.g14040 Utricularia gibba
unitig_749.g14041 Utricularia gibba
vmacro15063 Vaccinium macrocarpon
VMungo0331G0259 Vigna mungo
Zm00001eb109270 Zea mays
Zm00001eb327470 Zea mays

User provided reference genes

Program Settings