Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p37090 Brassica napus
A09p20690 Brassica napus
A09p68030 Brassica napus
Aa31LG1G20700 Aethionema arabicum
Aa31LG5G3320 Aethionema arabicum
Actinidia11382 Actinidia chinensis
Actinidia30113 Actinidia chinensis
Actinidia37563 Actinidia chinensis
Actinidia37564 Actinidia chinensis
Actinidia39940 Actinidia chinensis
Ah.04g153490 Amaranthus hybridus
Ah.13g074960 Amaranthus hybridus
AL1G13740 Arabidopsis lyrata
AL8G16200 Arabidopsis lyrata
Aqoxy7G02770 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7BKG94 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TVZ6DQ Arachis hypogaea
AT1G04140 Arabidopsis thaliana
AT5G43930 Arabidopsis thaliana
ATR0626G388 Amborella trichopoda
Atru.chr4.1857 Acer truncatum
Atru.chr5.1950 Acer truncatum
AUR62035347 Chenopodium quinoa
AUR62035894 Chenopodium quinoa
BcaB06g26242 Brassica carinata
BcaB07g30990 Brassica carinata
BcaC04g21889 Brassica carinata
BcaC06g31669 Brassica carinata
BcaC07g36933 Brassica carinata
BcaC07g42207 Brassica carinata
BcaC07g42210 Brassica carinata
BolC8t46892H Brassica oleracea
BolC8t52774H Brassica oleracea
BolC9t55519H Brassica oleracea
BraA08t35609Z Brassica rapa
BraA09t37673Z Brassica rapa
BraA09t42138Z Brassica rapa
C08p00910 Brassica napus
C08p52470 Brassica napus
C09p26160 Brassica napus
CARHR003490 Cardamine hirsuta
CARHR179480 Cardamine hirsuta
CARHR179490 Cardamine hirsuta
Carub.0001s0329 Capsella rubella
Carub.0008s0465 Capsella rubella
Ca_08760_v3 Cicer arietinum L.
Ca_09636_v3 Cicer arietinum L.
Ca_30218_v3 Cicer arietinum L.
CBR_g36239 Chara braunii
Cc00_g17180 Coffea canephora
Cc01_g17640 Coffea canephora
CDE02G2231 Ceratophyllum demersum
CDE08G0527 Ceratophyllum demersum
Cfa002501 Carpinus fangiana
Ciclev10004383m.g Citrus clementina
Ciclev10018910m.g Citrus clementina
CiPaw.02G104100 Carya illinoinensis
CiPaw.03G272600 Carya illinoinensis
ClCG06G007460 Citrullus lanatus
COL.COLO4_10095 Corchorus olitorius
COL.COLO4_16009 Corchorus olitorius
COL.COLO4_37666 Corchorus olitorius
Cpa.g.sc59.39 Carica papaya
Cpa.g.sc87.60 Carica papaya
Cre16.g655400 Chlamydomonas reinhardtii
CsaV3_2G012260 Cucumis sativus L.
CSS0004300 Camellia sinensis var. sinensis
CSS0005148 Camellia sinensis var. sinensis
CSS0016671 Camellia sinensis var. sinensis
CSS0046121 Camellia sinensis var. sinensis
DCAR_012613 Daucus carota
DCAR_024302 Daucus carota
Dinv19258 Davidia involucrata
Dinv27135 Davidia involucrata
Dinv29783 Davidia involucrata
Duzib133G0921 Durio zibethinus
Duzib212G0252 Durio zibethinus
ECA247G0615 Erigeron canadensis
ECA248G0259 Erigeron canadensis
EL10Ac3g06726 Beta vulgaris
Eucgr.D01020 Eucalyptus grandis
Eucgr.H02881 Eucalyptus grandis
FAN12G1997 Fragaria x ananassa
FAN15G0340 Fragaria x ananassa
FAN17G3008 Fragaria x ananassa
FAN22G0189 Fragaria x ananassa
FAN24G1556 Fragaria x ananassa
FAN27G1162 Fragaria x ananassa
FvH4_2g20210 Fragaria vesca
FvH4_4g05210 Fragaria vesca
Glyma.03G169000 Glycine max
Glyma.19G170300 Glycine max
Gohir.A07G153600 Gossypium hirsutum
Gohir.A09G231300 Gossypium hirsutum
Gohir.D07G159700 Gossypium hirsutum
Gohir.D09G232400 Gossypium hirsutum
Gorai.001G182800 Gossypium raimondii
Gorai.006G255300 Gossypium raimondii
GSVIVG01001859001 Vitis vinifera
GSVIVG01028455001 Vitis vinifera
HanXRQChr01g0014861 Helianthus annuus
HanXRQChr10g0280251 Helianthus annuus
Haze_11515 Corylus avellana
Haze_11521 Corylus avellana
Haze_24726 Corylus avellana
Hma1.2p1_0053F.1_g030980 Hydrangea macrophylla
Hma1.2p1_1224F.1_g268460 Hydrangea macrophylla
HPP92_025818 Vanilla planifolia
Hund19267 Selenicereus undatus
Hund24864 Selenicereus undatus
Lalb_Chr03g0026111 Lupinus albus
Lalb_Chr20g0113431 Lupinus albus
Lalb_Chr25g0289791 Lupinus albus
Lj1g0021183 Lotus japonicus
Lj2A1141G55 Lonicera japonica
Lj2A1141T60 Lonicera japonica
Lj5g0010153 Lotus japonicus
Lj6A640T37 Lonicera japonica
Lsat_1_v5_gn_2_9861 Lactuca sativa
Lsat_1_v5_gn_4_120260 Lactuca sativa
Lsat_1_v5_gn_4_7740 Lactuca sativa
Lsat_1_v5_gn_5_122481 Lactuca sativa
Lsat_1_v5_gn_5_180080 Lactuca sativa
Lsat_1_v5_gn_6_39181 Lactuca sativa
Lsat_1_v5_gn_8_110800 Lactuca sativa
Lsat_1_v5_gn_8_124880 Lactuca sativa
Lsat_1_v5_gn_8_78340 Lactuca sativa
Lsat_1_v5_gn_9_11721 Lactuca sativa
Manes.03G156000 Manihot esculenta
Manes.13G038200 Manihot esculenta
Manes.15G047600 Manihot esculenta
Mapoly0068s0020 Marchantia polymorpha
MCO15G568 Micromonas commoda
MD05G1185600 Malus domestica
MD10G1173800 Malus domestica
MD13G1226100 Malus domestica
MD16G1231400 Malus domestica
Medtr1g069355 Medicago truncatula
Medtr7g099210 Medicago truncatula
MELO3C023066.2 Cucumis melo
Migut.G00593 Erythranthe guttata
Migut.H00815 Erythranthe guttata
MSTRG.4191 Avicennia marina
MSTRG.9843 Avicennia marina
Nitab4.5_0000451g0030 Nicotiana tabacum
Nitab4.5_0000745g0010 Nicotiana tabacum
Nitab4.5_0000867g0090 Nicotiana tabacum
Nitab4.5_0001769g0120 Nicotiana tabacum
Nn5g27339 Nelumbo nucifera
Oeu008816.1 Olea europaea
Oeu012939.1 Olea europaea
Oeu023145.2 Olea europaea
Oeu029380.1 Olea europaea
Os02g0290300 Oryza sativa ssp. japonica
Os09g0296900 Oryza sativa ssp. japonica
Peaxi162Scf00125g01117 Petunia axillaris
Peaxi162Scf00164g00217 Petunia axillaris
PGR004G1317 Punica granatum
PGSC0003DMG401001493 Solanum tuberosum
Phvul.001G167400 Phaseolus vulgaris
Potri.002G254700 Populus trichocarpa
Potri.014G193900 Populus trichocarpa
Pp3c10_9370 Physcomitrium patens
Pp3c14_5930 Physcomitrium patens
PRCOL_00002684 Prasinoderma coloniale
Prupe.1G053600 Prunus persica
Prupe.8G212400 Prunus persica
Psat3g053040 Pisum sativum
Psat6g064240 Pisum sativum
PSO210G2378 Papaver somniferum
PSO210G6215 Papaver somniferum
PSO423G0070 Papaver somniferum
QL06p022154 Quercus lobata
QL09p039777 Quercus lobata
QL09p042482 Quercus lobata
RcHm_v2.0_Chr4g0396141 Rosa chinensis
RcHm_v2.0_Chr4g0413661 Rosa chinensis
RcHm_v2.0_Chr6g0280791 Rosa chinensis
RcHm_v2.0_Chr6g0285981 Rosa chinensis
Rhsim02G0049100 Rhododendron simsii
Rhsim13G0041200 Rhododendron simsii
Sabra02G0193700 Salix brachista
SalBow2G0460 Salvia bowleyana
SalBow3G0284 Salvia bowleyana
SalBow3G0659 Salvia bowleyana
SalBow5G2732 Salvia bowleyana
Sc19g0005710 Simmondsia chinensis
Sed0002103 Sechium edule
Sed0005716 Sechium edule
SEGI_10276 Sequoiadendron giganteum
SEGI_27078 Sequoiadendron giganteum
SEGI_28542 Sequoiadendron giganteum
SGA_v2.0_scaffold31G12608 Striga asiatica
SGA_v2.0_scaffold31G12613 Striga asiatica
SGA_v2.0_scaffold57G20217 Striga asiatica
SGA_v2.0_scaffold831G53649 Striga asiatica
SHI30653 Sapria himalayana
SMO147G0029 Selaginella moellendorffii
Solyc05g053130.3 Solanum lycopersicum
Solyc09g091020.3 Solanum lycopersicum
Sopen05g031630 Solanum pennellii
Sopen09g034000 Solanum pennellii
Sp1g02960 Schrenkiella parvula
Sp2g08750 Schrenkiella parvula
TAR362G1103 Trochodendron aralioides
TAR633G1893 Trochodendron aralioides
THA.LOC104801119 Tarenaya hassleriana
THA.LOC104815976 Tarenaya hassleriana
Thecc.01G246900 Theobroma cacao
Thecc.04G269600 Theobroma cacao
Thhalv10003374m.g Eutrema salsugineum
Thhalv10006848m.g Eutrema salsugineum
TPR.G22853 Trifolium pratense
TWI18G0937 Tripterygium wilfordii
unitig_736.g22483 Utricularia gibba
unitig_899.g14855 Utricularia gibba
vmacro02719 Vaccinium macrocarpon
vmacro15492 Vaccinium macrocarpon
vmacro22826 Vaccinium macrocarpon
Zm00001eb022520 Zea mays
Zm00001eb087120 Zea mays
Zm00001eb097650 Zea mays
Zm00001eb420250 Zea mays

User provided reference genes

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