Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p46480 Brassica napus
A08p14090 Brassica napus
Aa31LG6G1710 Aethionema arabicum
Aa31LG9G7430 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.571 Anthoceros agrestis
Actinidia01334 Actinidia chinensis
Actinidia14774 Actinidia chinensis
Actinidia18141 Actinidia chinensis
Actinidia24580 Actinidia chinensis
Actinidia29279 Actinidia chinensis
Ah.07g201350 Amaranthus hybridus
Ah.12g055960 Amaranthus hybridus
AL7G35140 Arabidopsis lyrata
AL8G13060 Arabidopsis lyrata
Aqoxy2G01477 Aquilegia oxysepala
Aqoxy2G02748 Aquilegia oxysepala
Aqoxy2G04028 Aquilegia oxysepala
Aqoxy7G01658 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.M4FFXQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VHU77H Arachis hypogaea
AT4G19006 Arabidopsis thaliana
AT5G45620 Arabidopsis thaliana
ATR0829G217 Amborella trichopoda
Atru.chr6.1549 Acer truncatum
AUR62007408 Chenopodium quinoa
AUR62027324 Chenopodium quinoa
BcaB04g18516 Brassica carinata
BcaC01g00588 Brassica carinata
BcaC06g31533 Brassica carinata
BcaC06g34415 Brassica carinata
BcaC06g34417 Brassica carinata
BolC3t20437H Brassica oleracea
BolC4t26585H Brassica oleracea
BolC7t43412H Brassica oleracea
BraA06t27521Z Brassica rapa
BraA08t33403Z Brassica rapa
C03p81670 Brassica napus
C07p28740 Brassica napus
CAN.G305.29 Capsicum annuum
CAN.G812.34 Capsicum annuum
CANSAT21G2083 Cannabis sativa
CARHR176400 Cardamine hirsuta
CARHR225910 Cardamine hirsuta
Carub.0007s2215 Capsella rubella
Carub.0008s0240 Capsella rubella
Ca_25159_v3 Cicer arietinum L.
CBR_g12752 Chara braunii
Cc08_g03830 Coffea canephora
CDE02G2942 Ceratophyllum demersum
CDE11G0146 Ceratophyllum demersum
Cfa022819 Carpinus fangiana
Ciclev10001468m.g Citrus clementina
CiPaw.12G069600 Carya illinoinensis
CiPaw.12G069700 Carya illinoinensis
ClCG10G001210 Citrullus lanatus
COL.COLO4_16915 Corchorus olitorius
Cpa.g.c47157 Carica papaya
Cpa.g.sc16.11 Carica papaya
Cpa.g.sc2151.1 Carica papaya
Cre17.g734516 Chlamydomonas reinhardtii
CsaV3_3G001250 Cucumis sativus L.
CSS0001735 Camellia sinensis var. sinensis
CSS0021453 Camellia sinensis var. sinensis
CSS0035228 Camellia sinensis var. sinensis
CSS0050250 Camellia sinensis var. sinensis
DCAR_000654 Daucus carota
DCAR_004589 Daucus carota
DCAR_008205 Daucus carota
Dinv06912 Davidia involucrata
Dinv29020 Davidia involucrata
Duzib068G1377 Durio zibethinus
Duzib084G0141 Durio zibethinus
Duzib205G1813 Durio zibethinus
ECA240G2349 Erigeron canadensis
EL10Ac5g11933 Beta vulgaris
Eucgr.D02637 Eucalyptus grandis
Eucgr.E01309 Eucalyptus grandis
Eucgr.E02062 Eucalyptus grandis
FAN04G1945 Fragaria x ananassa
FAN08G2865 Fragaria x ananassa
FAN13G0052 Fragaria x ananassa
FAN18G1293 Fragaria x ananassa
FAN18G2386 Fragaria x ananassa
FAN26G2082 Fragaria x ananassa
FvH4_5g23350 Fragaria vesca
Glyma.01G011100 Glycine max
Glyma.09G210000 Glycine max
Gohir.A03G000025 Gossypium hirsutum
Gohir.A08G152800 Gossypium hirsutum
Gohir.A11G028500 Gossypium hirsutum
Gohir.D03G176901 Gossypium hirsutum
Gohir.D08G173700 Gossypium hirsutum
Gohir.D11G030700 Gossypium hirsutum
Gorai.003G186200 Gossypium raimondii
Gorai.004G181400 Gossypium raimondii
Gorai.007G033600 Gossypium raimondii
GSVIVG01013003001 Vitis vinifera
GSVIVG01013005001 Vitis vinifera
HanXRQChr03g0082021 Helianthus annuus
HanXRQChr06g0172911 Helianthus annuus
HanXRQChr12g0364101 Helianthus annuus
HanXRQChr12g0364111 Helianthus annuus
HanXRQChr13g0404831 Helianthus annuus
Haze_05990 Corylus avellana
Haze_08126 Corylus avellana
Haze_13294 Corylus avellana
Haze_25304 Corylus avellana
Haze_26619 Corylus avellana
Hma1.2p1_1460F.1_g285000 Hydrangea macrophylla
Hma1.2p1_1819F.1_g304080 Hydrangea macrophylla
HPP92_002573 Vanilla planifolia
HPP92_002575 Vanilla planifolia
HPP92_005376 Vanilla planifolia
HPP92_005378 Vanilla planifolia
HPP92_005436 Vanilla planifolia
HPP92_005440 Vanilla planifolia
Hund11106 Selenicereus undatus
Hund14335 Selenicereus undatus
Hund14514 Selenicereus undatus
Lalb_Chr05g0215681 Lupinus albus
Lalb_Chr09g0325361 Lupinus albus
Lalb_Chr16g0380961 Lupinus albus
Lj2g0002525 Lotus japonicus
Lj7A123G21 Lonicera japonica
Lj8C318G18 Lonicera japonica
Lsat_1_v5_gn_3_21060 Lactuca sativa
Lsat_1_v5_gn_6_73301 Lactuca sativa
Manes.15G192600 Manihot esculenta
Manes.17G014700 Manihot esculenta
Mapoly0083s0033 Marchantia polymorpha
MBI04_g20977_MAGBIO Magnolia biondii
MCO12G099 Micromonas commoda
MD06G1024700 Malus domestica
MD16G1281300 Malus domestica
Medtr5g027960 Medicago truncatula
MELO3C013814.2 Cucumis melo
Migut.E01326 Erythranthe guttata
MSTRG.13899 Avicennia marina
MSTRG.1792 Avicennia marina
Nitab4.5_0000451g0040 Nicotiana tabacum
Nitab4.5_0000745g0020 Nicotiana tabacum
Nitab4.5_0001769g0140 Nicotiana tabacum
Nitab4.5_0001998g0060 Nicotiana tabacum
Nitab4.5_0002738g0030 Nicotiana tabacum
Nitab4.5_0009986g0010 Nicotiana tabacum
Nn1g01895 Nelumbo nucifera
Nn4g26616 Nelumbo nucifera
Oeu017097.1 Olea europaea
Oeu027878.2 Olea europaea
Oeu031075.3 Olea europaea
Os01g0511300 Oryza sativa ssp. japonica
Os03g0214600 Oryza sativa ssp. japonica
Peaxi162Scf00110g01622 Petunia axillaris
Peaxi162Scf00125g01116 Petunia axillaris
Peaxi162Scf00164g00215 Petunia axillaris
Peaxi162Scf00755g00414 Petunia axillaris
Peaxi162Scf00755g00415 Petunia axillaris
Peaxi162Scf01007g10016 Petunia axillaris
PGR031G1048 Punica granatum
PGR042G1922 Punica granatum
PGSC0003DMG400024449 Solanum tuberosum
PGSC0003DMG400027201 Solanum tuberosum
Phvul.002G134000 Phaseolus vulgaris
Phvul.004G155700 Phaseolus vulgaris
Potri.001G135200 Populus trichocarpa
Potri.003G098400 Populus trichocarpa
Pp3c15_23390 Physcomitrium patens
Pp3c9_24880 Physcomitrium patens
PRCOL_00006942 Prasinoderma coloniale
Prupe.5G025900 Prunus persica
Psat2g140000 Pisum sativum
Psat3g004960 Pisum sativum
Psat7g028000 Pisum sativum
PSO017G1687 Papaver somniferum
PSO675G5135 Papaver somniferum
QL12p000156 Quercus lobata
RcHm_v2.0_Chr7g0212291 Rosa chinensis
Rhsim07G0134200 Rhododendron simsii
Rhsim11G0028300 Rhododendron simsii
Sabra01G0104600 Salix brachista
Sabra03G0066700 Salix brachista
SalBow1G0409 Salvia bowleyana
SalBow1G5649 Salvia bowleyana
SalBow1G6542 Salvia bowleyana
SalBow1G7829 Salvia bowleyana
SalBow1G8036 Salvia bowleyana
SalBow6G0099 Salvia bowleyana
SalBow8G0471 Salvia bowleyana
Sc01g0006010 Simmondsia chinensis
Sed0008477 Sechium edule
Sed0013712 Sechium edule
SEGI_14724 Sequoiadendron giganteum
SEGI_23544 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31384 Striga asiatica
SGA_v2.0_scaffold144G35861 Striga asiatica
SMO356G0440 Selaginella moellendorffii
Solyc05g053140.3 Solanum lycopersicum
Solyc09g090720.3 Solanum lycopersicum
Sopen05g031650 Solanum pennellii
Sopen09g033660 Solanum pennellii
Sp2g10510 Schrenkiella parvula
TAR375G0586 Trochodendron aralioides
TAR629G0895 Trochodendron aralioides
THA.LOC104798451 Tarenaya hassleriana
THA.LOC104798508 Tarenaya hassleriana
THA.LOC104806178 Tarenaya hassleriana
Thecc.03G311900 Theobroma cacao
Thhalv10000920m.g Eutrema salsugineum
Thhalv10025439m.g Eutrema salsugineum
TPR.G12225 Trifolium pratense
TPR.G19451 Trifolium pratense
TWI60G0391 Tripterygium wilfordii
TWI81G0619 Tripterygium wilfordii
unitig_0.g2211 Utricularia gibba
unitig_0.g2212 Utricularia gibba
unitig_747.g21361 Utricularia gibba
unitig_747.g21362 Utricularia gibba
vmacro00239 Vaccinium macrocarpon
vmacro14210 Vaccinium macrocarpon
VMungo0464G1943 Vigna mungo
Zm00001eb025130 Zea mays
Zm00001eb072040 Zea mays
Zm00001eb225010 Zea mays

User provided reference genes

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