Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p26380 Brassica napus
A08p26390 Brassica napus
Aa31LG3G14530 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3307 Anthoceros agrestis
Actinidia08047 Actinidia chinensis
Actinidia09620 Actinidia chinensis
Actinidia25107 Actinidia chinensis
Actinidia30621 Actinidia chinensis
Actinidia34015 Actinidia chinensis
Actinidia34016 Actinidia chinensis
Actinidia39791 Actinidia chinensis
Ah.02g131010 Amaranthus hybridus
AL1G40620 Arabidopsis lyrata
AL1G40840 Arabidopsis lyrata
Aqoxy3G01615 Aquilegia oxysepala
Aqoxy3G01616 Aquilegia oxysepala
Aqoxy3G01640 Aquilegia oxysepala
Aqoxy5G03256 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.51F4P8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V6C9BH Arachis hypogaea
AT1G24300 Arabidopsis thaliana
AT1G27430 Arabidopsis thaliana
AT1G55175 Arabidopsis thaliana
ATR0582G309 Amborella trichopoda
ATR0686G189 Amborella trichopoda
Atru.chr11.2377 Acer truncatum
Atru.chr11.2378 Acer truncatum
Atru.chr6.2601 Acer truncatum
AUR62005661 Chenopodium quinoa
AUR62028892 Chenopodium quinoa
BcaB03g12075 Brassica carinata
BcaB03g12076 Brassica carinata
BcaC01g01619 Brassica carinata
BcaC06g35273 Brassica carinata
BolC3t19659H Brassica oleracea
BraA08t34590Z Brassica rapa
C03p73680 Brassica napus
C03p73700 Brassica napus
CAN.G31.3 Capsicum annuum
CAN.G75.8 Capsicum annuum
CANSAT01G1374 Cannabis sativa
CANSAT01G2060 Cannabis sativa
CARHR026790 Cardamine hirsuta
CARHR027020 Cardamine hirsuta
Carub.0001s2597 Capsella rubella
Carub.0001s2609 Capsella rubella
Ca_26730_v3 Cicer arietinum L.
Cc11_g17310 Coffea canephora
CDE05G0933 Ceratophyllum demersum
CDE05G1424 Ceratophyllum demersum
Cfa009397 Carpinus fangiana
Ciclev10014024m.g Citrus clementina
Ciclev10030493m.g Citrus clementina
CiPaw.03G058400 Carya illinoinensis
CiPaw.05G106000 Carya illinoinensis
CiPaw.06G106100 Carya illinoinensis
ClCG06G001930 Citrullus lanatus
COL.COLO4_13295 Corchorus olitorius
COL.COLO4_13296 Corchorus olitorius
Cpa.g.sc360.3 Carica papaya
Cpa.g.sc360.4 Carica papaya
Cpa.g.sc360.5 Carica papaya
Cpa.g.sc360.6 Carica papaya
CsaV3_6G007980 Cucumis sativus L.
CSS0012326 Camellia sinensis var. sinensis
CSS0019564 Camellia sinensis var. sinensis
DCAR_024651 Daucus carota
Dinv11705 Davidia involucrata
Dinv17596 Davidia involucrata
Dinv39379 Davidia involucrata
Duzib147G0957 Durio zibethinus
Duzib248G1470 Durio zibethinus
Duzib251G0076 Durio zibethinus
Duzib264G0347 Durio zibethinus
Duzib264G0464 Durio zibethinus
ECA233G3893 Erigeron canadensis
EL10Ac6g13546 Beta vulgaris
Eucgr.B03531 Eucalyptus grandis
FAN02G2301 Fragaria x ananassa
FAN05G1891 Fragaria x ananassa
FAN07G2860 Fragaria x ananassa
FAN09G1608 Fragaria x ananassa
FAN12G3359 Fragaria x ananassa
FAN14G4132 Fragaria x ananassa
FAN17G2511 Fragaria x ananassa
FvH4_4g23270 Fragaria vesca
FvH4_6g53851 Fragaria vesca
Glyma.16G053500 Glycine max
Glyma.19G095700 Glycine max
Gohir.A09G037700 Gossypium hirsutum
Gohir.A11G062500 Gossypium hirsutum
Gohir.A11G067700 Gossypium hirsutum
Gohir.D09G038700 Gossypium hirsutum
Gohir.D11G058700 Gossypium hirsutum
Gohir.D11G066300 Gossypium hirsutum
Gorai.006G044200 Gossypium raimondii
Gorai.007G071700 Gossypium raimondii
Gorai.007G071800 Gossypium raimondii
GSVIVG01000921001 Vitis vinifera
GSVIVG01000922001 Vitis vinifera
GSVIVG01033051001 Vitis vinifera
HanXRQChr08g0210011 Helianthus annuus
HanXRQChr12g0362261 Helianthus annuus
HanXRQChr17g0568861 Helianthus annuus
HanXRQChr17g0568871 Helianthus annuus
HanXRQChr17g0568881 Helianthus annuus
Haze_12457 Corylus avellana
Hma1.2p1_0065F.1_g034940 Hydrangea macrophylla
Hma1.2p1_0275F.1_g110540 Hydrangea macrophylla
HPP92_028596 Vanilla planifolia
HPP92_028597 Vanilla planifolia
HPP92_028598 Vanilla planifolia
Hund06111 Selenicereus undatus
Hund25484 Selenicereus undatus
Lalb_Chr00c01g0403831 Lupinus albus
Lalb_Chr02g0156781 Lupinus albus
Lalb_Chr06g0173741 Lupinus albus
Lalb_Chr21g0316871 Lupinus albus
Lalb_Chr21g0316891 Lupinus albus
Lalb_Chr22g0360251 Lupinus albus
Lj1g0008700 Lotus japonicus
Lj3A1076G35 Lonicera japonica
Lj3C1074T4 Lonicera japonica
Lj3C1076G6 Lonicera japonica
Lj6A832T38 Lonicera japonica
Lsat_1_v5_gn_4_161 Lactuca sativa
Lsat_1_v5_gn_4_221 Lactuca sativa
Lsat_1_v5_gn_5_29101 Lactuca sativa
Lsat_1_v5_gn_7_52881 Lactuca sativa
Manes.04G088200 Manihot esculenta
Manes.12G007400 Manihot esculenta
Manes.13G007800 Manihot esculenta
Mapoly0017s0026 Marchantia polymorpha
MBI07_g02007_MAGBIO Magnolia biondii
MBI11_g31939_MAGBIO Magnolia biondii
MBI11_g38271_MAGBIO Magnolia biondii
MBI11_g38272_MAGBIO Magnolia biondii
MCO10G136 Micromonas commoda
MD09G1007900 Malus domestica
MD13G1123200 Malus domestica
MD16G1124000 Malus domestica
MD17G1002800 Malus domestica
Medtr7g027680 Medicago truncatula
MELO3C022336.2 Cucumis melo
Migut.K01012 Erythranthe guttata
Nitab4.5_0000039g0080 Nicotiana tabacum
Nitab4.5_0001771g0100 Nicotiana tabacum
Nitab4.5_0002480g0020 Nicotiana tabacum
Nitab4.5_0004878g0010 Nicotiana tabacum
Nn1g03771 Nelumbo nucifera
Nn3g16377 Nelumbo nucifera
Nn4g22239 Nelumbo nucifera
Nn4g26150 Nelumbo nucifera
Nn6g33386 Nelumbo nucifera
Oeu011351.2 Olea europaea
Oeu012316.1 Olea europaea
Oeu044469.1 Olea europaea
Oeu044470.1 Olea europaea
Os01g0924600 Oryza sativa ssp. japonica
Peaxi162Scf00128g01613 Petunia axillaris
PGR102G3269 Punica granatum
PGSC0003DMG400002362 Solanum tuberosum
PGSC0003DMG400010805 Solanum tuberosum
Phvul.001G089500 Phaseolus vulgaris
Potri.001G326500 Populus trichocarpa
Potri.001G326700 Populus trichocarpa
Potri.017G069220 Populus trichocarpa
Pp3c12_12950 Physcomitrium patens
Pp3c12_13780 Physcomitrium patens
Prupe.1G221600 Prunus persica
Prupe.3G309100 Prunus persica
Psat3g160840 Pisum sativum
Psat3g183960 Pisum sativum
PSO017G0558 Papaver somniferum
PSO017G1912 Papaver somniferum
PSO478G2322 Papaver somniferum
PSO478G5081 Papaver somniferum
QL02p070794 Quercus lobata
QL03p051306 Quercus lobata
RcHm_v2.0_Chr2g0176001 Rosa chinensis
RcHm_v2.0_Chr4g0429641 Rosa chinensis
Rhsim12G0023100 Rhododendron simsii
Rhsim12G0023200 Rhododendron simsii
Sabra16G0209000 Salix brachista
Sabra16G0209200 Salix brachista
Sabra17G0058900 Salix brachista
SalBow2G3600 Salvia bowleyana
Sc04g0010350 Simmondsia chinensis
Sc11g0000320 Simmondsia chinensis
Sc14g0009170 Simmondsia chinensis
Sed0000746 Sechium edule
Sed0008887 Sechium edule
SEGI_16901 Sequoiadendron giganteum
SGA_v2.0_scaffold228G43258 Striga asiatica
SGA_v2.0_scaffold46G17427 Striga asiatica
SMO358G0551 Selaginella moellendorffii
Solyc05g015920.3 Solanum lycopersicum
Solyc05g015930.4 Solanum lycopersicum
Sopen05g012000 Solanum pennellii
Sopen05g012020 Solanum pennellii
Sp1g23660 Schrenkiella parvula
TAR371G1274 Trochodendron aralioides
TAR374G0446 Trochodendron aralioides
TAR374G1567 Trochodendron aralioides
TAR629G1943 Trochodendron aralioides
THA.LOC104807415 Tarenaya hassleriana
Thecc.02G200100 Theobroma cacao
Thecc.04G040800 Theobroma cacao
Thhalv10006550m.g Eutrema salsugineum
Thhalv10006556m.g Eutrema salsugineum
TPR.G8567 Trifolium pratense
TWI18G0019 Tripterygium wilfordii
TWI32G0157 Tripterygium wilfordii
TWI34G0873 Tripterygium wilfordii
TWI34G1549 Tripterygium wilfordii
TWI34G1871 Tripterygium wilfordii
TWI36G0350 Tripterygium wilfordii
unitig_26.g10417 Utricularia gibba
unitig_749.g13315 Utricularia gibba
vmacro01043 Vaccinium macrocarpon
vmacro16090 Vaccinium macrocarpon
Zm00001eb044310 Zea mays
Zm00001eb364080 Zea mays
Zm00001eb364090 Zea mays

User provided reference genes

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