Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p09690 Brassica napus
A05p13650 Brassica napus
A10p19870 Brassica napus
Aa31LG1G14330 Aethionema arabicum
Aa31LG5G5080 Aethionema arabicum
Actinidia06296 Actinidia chinensis
Actinidia25683 Actinidia chinensis
Actinidia31714 Actinidia chinensis
Ah.06g193080 Amaranthus hybridus
AL4G27240 Arabidopsis lyrata
AL6G31410 Arabidopsis lyrata
AL80U10020 Arabidopsis lyrata
Aqoxy1G00039 Aquilegia oxysepala
Aqoxy2G00087 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0YUQ4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MW6VFJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea
AT2G31940 Arabidopsis thaliana
AT5G19875 Arabidopsis thaliana
ATR0598G068 Amborella trichopoda
ATR0598G118 Amborella trichopoda
ATR1042G001 Amborella trichopoda
Atru.chr11.2712 Acer truncatum
Atru.chr3.2225 Acer truncatum
Atru.chr3.2230 Acer truncatum
AUR62000034 Chenopodium quinoa
AUR62019204 Chenopodium quinoa
BcaB01g04824 Brassica carinata
BcaB01g04845 Brassica carinata
BcaB02g10426 Brassica carinata
BcaB08g36562 Brassica carinata
BcaC02g11300 Brassica carinata
BcaC03g15831 Brassica carinata
BcaC04g19388 Brassica carinata
BcaC04g19393 Brassica carinata
BolC2t09593H Brassica oleracea
BolC3t13597H Brassica oleracea
BolC4t23330H Brassica oleracea
BolC9t58489H Brassica oleracea
BolC9t58493H Brassica oleracea
BraA03t10285Z Brassica rapa
BraA05t20303Z Brassica rapa
BraA10t44062Z Brassica rapa
C02p35760 Brassica napus
C03p11260 Brassica napus
C04p17820 Brassica napus
C09p56240 Brassica napus
CAN.G1361.1 Capsicum annuum
CANSAT11G1331 Cannabis sativa
CANSAT11G2107 Cannabis sativa
CARHR125650 Cardamine hirsuta
CARHR192990 Cardamine hirsuta
Carub.0004s1324 Capsella rubella
Carub.0006s1824 Capsella rubella
Ca_03208_v3 Cicer arietinum L.
Ca_18172_v3 Cicer arietinum L.
Cc01_g01060 Coffea canephora
Cc02_g26840 Coffea canephora
Cfa009621 Carpinus fangiana
Cfa010704 Carpinus fangiana
Ciclev10017191m.g Citrus clementina
Ciclev10017225m.g Citrus clementina
Ciclev10018265m.g Citrus clementina
CiPaw.12G019000 Carya illinoinensis
CiPaw.13G171900 Carya illinoinensis
CiPaw.13G172000 Carya illinoinensis
ClCG02G023860 Citrullus lanatus
ClCG03G013980 Citrullus lanatus
ClCG09G003670 Citrullus lanatus
COL.COLO4_10451 Corchorus olitorius
Cpa.g.sc119.86 Carica papaya
Cpa.g.sc1500.2 Carica papaya
CsaV3_1G042240 Cucumis sativus L.
CsaV3_7G031520 Cucumis sativus L.
CSS0002758 Camellia sinensis var. sinensis
CSS0011912 Camellia sinensis var. sinensis
CSS0014301 Camellia sinensis var. sinensis
CSS0047744 Camellia sinensis var. sinensis
DCAR_024359 Daucus carota
Duzib150G0559 Durio zibethinus
Duzib168G1091 Durio zibethinus
Duzib168G1332 Durio zibethinus
EL10Ac4g10343 Beta vulgaris
Eucgr.B03628 Eucalyptus grandis
Eucgr.B03629 Eucalyptus grandis
Eucgr.J01788 Eucalyptus grandis
FAN11G1424 Fragaria x ananassa
FAN11G2614 Fragaria x ananassa
FAN16G2075 Fragaria x ananassa
FAN16G3363 Fragaria x ananassa
FAN21G3633 Fragaria x ananassa
FAN25G3035 Fragaria x ananassa
FvH4_3g44720 Fragaria vesca
FvH4_3g44730 Fragaria vesca
Glyma.02G258600 Glycine max
Glyma.05G141600 Glycine max
Glyma.08G097000 Glycine max
Glyma.08G158500 Glycine max
Glyma.14G053000 Glycine max
Glyma.15G267900 Glycine max
Gohir.A08G012000 Gossypium hirsutum
Gohir.A13G213900 Gossypium hirsutum
Gohir.D08G022500 Gossypium hirsutum
Gohir.D13G217700 Gossypium hirsutum
Gorai.004G017800 Gossypium raimondii
Gorai.013G248300 Gossypium raimondii
GSVIVG01001351001 Vitis vinifera
GSVIVG01014621001 Vitis vinifera
HanXRQChr02g0056621 Helianthus annuus
HanXRQChr13g0404171 Helianthus annuus
HanXRQChr16g0520931 Helianthus annuus
HanXRQChr17g0564171 Helianthus annuus
Haze_03274 Corylus avellana
Haze_22989 Corylus avellana
Haze_22990 Corylus avellana
Hma1.2p1_0128F.1_g059830 Hydrangea macrophylla
HPP92_004380 Vanilla planifolia
HPP92_016185 Vanilla planifolia
HPP92_026732 Vanilla planifolia
Lalb_Chr01g0014941 Lupinus albus
Lalb_Chr07g0187611 Lupinus albus
Lalb_Chr10g0105471 Lupinus albus
Lalb_Chr25g0283731 Lupinus albus
Lj3g0018900 Lotus japonicus
LjContig00357g0022496 Lotus japonicus
Lsat_1_v5_gn_2_101540 Lactuca sativa
Lsat_1_v5_gn_4_42560 Lactuca sativa
Lsat_1_v5_gn_6_50860 Lactuca sativa
Manes.03G089000 Manihot esculenta
Manes.10G152800 Manihot esculenta
Manes.15G104400 Manihot esculenta
MBI05_g33720_MAGBIO Magnolia biondii
MBI09_g26111_MAGBIO Magnolia biondii
MBI13_g29639_MAGBIO Magnolia biondii
MBI13_g29645_MAGBIO Magnolia biondii
MD03G1010800 Malus domestica
MD03G1010900 Malus domestica
MD11G1012600 Malus domestica
MD11G1012700 Malus domestica
Medtr2g062220 Medicago truncatula
Medtr5g084240 Medicago truncatula
Medtr5g084250 Medicago truncatula
MELO3C000306.2 Cucumis melo
MELO3C014664.2 Cucumis melo
Migut.B01404 Erythranthe guttata
Migut.N00578 Erythranthe guttata
MSTRG.17073 Avicennia marina
MSTRG.18858 Avicennia marina
Nn2g15754 Nelumbo nucifera
Nn7g35954 Nelumbo nucifera
Oeu032780.1 Olea europaea
Oeu049545.1 Olea europaea
Oeu060706.1 Olea europaea
Os02g0775300 Oryza sativa ssp. japonica
Os06g0206900 Oryza sativa ssp. japonica
Os09g0445600 Oryza sativa ssp. japonica
PGR102G0542 Punica granatum
PGR102G1745 Punica granatum
PGR119G0056 Punica granatum
PGSC0003DMG400015948 Solanum tuberosum
PGSC0003DMG400028989 Solanum tuberosum
Phvul.002G181000 Phaseolus vulgaris
Phvul.005G042500 Phaseolus vulgaris
Phvul.008G217700 Phaseolus vulgaris
Potri.001G009200 Populus trichocarpa
Potri.001G009300 Populus trichocarpa
Potri.001G231300 Populus trichocarpa
Potri.003G216000 Populus trichocarpa
Potri.003G216100 Populus trichocarpa
Potri.009G024500 Populus trichocarpa
Prupe.2G001900 Prunus persica
Prupe.6G010700 Prunus persica
Prupe.6G010800 Prunus persica
Psat7g081160 Pisum sativum
PSO339G2776 Papaver somniferum
PSO339G6128 Papaver somniferum
PSO384G3054 Papaver somniferum
PSO478G3040 Papaver somniferum
PSO782G3341 Papaver somniferum
QL01p010317 Quercus lobata
QL01p010327 Quercus lobata
QL04p001663 Quercus lobata
RcHm_v2.0_Chr5g0081381 Rosa chinensis
RcHm_v2.0_Chr5g0081421 Rosa chinensis
RcHm_v2.0_Chr5g0081431 Rosa chinensis
Rhsim01G0185600 Rhododendron simsii
Rhsim07G0049500 Rhododendron simsii
Sabra01G0007200 Salix brachista
Sabra09G0016100 Salix brachista
SalBow3G3394 Salvia bowleyana
Sc09g0000290 Simmondsia chinensis
Sc15g0004980 Simmondsia chinensis
Sed0002402 Sechium edule
Sed0005920 Sechium edule
Sed0014538 Sechium edule
Sed0020809 Sechium edule
Sed0021387 Sechium edule
SHI30463 Sapria himalayana
Solyc10g044880.1 Solanum lycopersicum
Sopen01g033250 Solanum pennellii
Sopen10g013830 Solanum pennellii
Sp4g14300 Schrenkiella parvula
Sp6g24510 Schrenkiella parvula
TAR369G0713 Trochodendron aralioides
TAR623G1618 Trochodendron aralioides
TAR633G1282 Trochodendron aralioides
TAR633G2572 Trochodendron aralioides
THA.LOC104807528 Tarenaya hassleriana
THA.LOC104811059 Tarenaya hassleriana
THA.LOC104826176 Tarenaya hassleriana
Thecc.09G214300 Theobroma cacao
Thecc.09G214600 Theobroma cacao
Thhalv10015028m.g Eutrema salsugineum
Thhalv10017436m.g Eutrema salsugineum
TPR.G16147 Trifolium pratense
TPR.G32947 Trifolium pratense
TPR.G9574 Trifolium pratense
TWI38G0681 Tripterygium wilfordii
VMungo0251G1179 Vigna mungo
VMungo0647G0318 Vigna mungo
VMungo1080G1851 Vigna mungo
Zm00001eb256560 Zea mays
Zm00001eb314350 Zea mays

User provided reference genes

Program Settings