Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p05470 Brassica napus
A10p20230 Brassica napus
A10p25570 Brassica napus
Aa31LG3G15000 Aethionema arabicum
Aa31LG5G8960 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4408 Anthoceros agrestis
Actinidia23125 Actinidia chinensis
Actinidia23808 Actinidia chinensis
Actinidia33398 Actinidia chinensis
Actinidia34525 Actinidia chinensis
Ah.02g110990 Amaranthus hybridus
Ah.11g050720 Amaranthus hybridus
AL6G23020 Arabidopsis lyrata
AL6G30980 Arabidopsis lyrata
Aqoxy3G03183 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1M3QP5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G94RKZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QV0MN5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TY5FXW Arachis hypogaea
AT5G12230 Arabidopsis thaliana
AT5G19480 Arabidopsis thaliana
ATR0225G013 Amborella trichopoda
ATR0681G356 Amborella trichopoda
Atru.chr10.1042 Acer truncatum
Atru.chr6.3498 Acer truncatum
AUR62008055 Chenopodium quinoa
AUR62028631 Chenopodium quinoa
BcaB01g05417 Brassica carinata
BcaNung06270 Brassica carinata
BcaNung06881 Brassica carinata
BolC3t13144H Brassica oleracea
BolC9t59299H Brassica oleracea
BraA03t09885Z Brassica rapa
BraA10t44094Z Brassica rapa
BraA10t44625Z Brassica rapa
C03p06380 Brassica napus
C09p56820 Brassica napus
C09p64660 Brassica napus
CAN.G1341.3 Capsicum annuum
CAN.G181.42 Capsicum annuum
CAN.G438.123 Capsicum annuum
CAN.G844.2 Capsicum annuum
CAN.G874.43 Capsicum annuum
CARHR193440 Cardamine hirsuta
CARHR200890 Cardamine hirsuta
Carub.0006s1073 Capsella rubella
Carub.0006s1782 Capsella rubella
CBR_g48048 Chara braunii
Cc00_g24380 Coffea canephora
CDE05G2170 Ceratophyllum demersum
Cfa000877 Carpinus fangiana
Cfa010612 Carpinus fangiana
Cfa010615 Carpinus fangiana
Ciclev10017082m.g Citrus clementina
CiPaw.09G118000 Carya illinoinensis
CiPaw.13G057200 Carya illinoinensis
CiPaw.14G044600 Carya illinoinensis
ClCG09G007970 Citrullus lanatus
COL.COLO4_17660 Corchorus olitorius
COL.COLO4_29919 Corchorus olitorius
Cpa.g.sc33.149 Carica papaya
CsaV3_7G027100 Cucumis sativus L.
CSS0001461 Camellia sinensis var. sinensis
CSS0039406 Camellia sinensis var. sinensis
CSS0050244 Camellia sinensis var. sinensis
DCAR_012709 Daucus carota
DCAR_018605 Daucus carota
DCAR_027882 Daucus carota
Dinv07635 Davidia involucrata
Dinv21500 Davidia involucrata
Dinv28784 Davidia involucrata
Duzib132G1198 Durio zibethinus
Duzib133G1072 Durio zibethinus
ECA247G3704 Erigeron canadensis
ECA248G1887 Erigeron canadensis
EL10Ac5g10577 Beta vulgaris
Eucgr.D00247 Eucalyptus grandis
Eucgr.H00687 Eucalyptus grandis
Eucgr.K02351 Eucalyptus grandis
FAN11G0631 Fragaria x ananassa
FAN11G2393 Fragaria x ananassa
FAN15G3415 Fragaria x ananassa
FAN16G3361 Fragaria x ananassa
FAN21G2113 Fragaria x ananassa
FAN24G0725 Fragaria x ananassa
FAN27G0893 Fragaria x ananassa
FAN27G2632 Fragaria x ananassa
FvH4_2g17320 Fragaria vesca
FvH4_3g09480 Fragaria vesca
Glyma.04G001800 Glycine max
Glyma.05G144200 Glycine max
Glyma.06G001300 Glycine max
Glyma.07G058600 Glycine max
Glyma.08G100600 Glycine max
Glyma.16G027500 Glycine max
Gohir.A07G161500 Gossypium hirsutum
Gohir.A07G195100 Gossypium hirsutum
Gohir.A08G048300 Gossypium hirsutum
Gohir.D07G168300 Gossypium hirsutum
Gohir.D07G201500 Gossypium hirsutum
Gohir.D08G058400 Gossypium hirsutum
Gorai.001G226200 Gossypium raimondii
Gorai.004G060300 Gossypium raimondii
Gorai.N001700 Gossypium raimondii
GSVIVG01001920001 Vitis vinifera
GSVIVG01021574001 Vitis vinifera
HanXRQChr01g0010561 Helianthus annuus
HanXRQChr01g0025141 Helianthus annuus
HanXRQChr08g0225241 Helianthus annuus
HanXRQChr10g0281231 Helianthus annuus
HanXRQChr11g0347351 Helianthus annuus
Haze_03544 Corylus avellana
Haze_05712 Corylus avellana
Hma1.2p1_0161F.1_g071730 Hydrangea macrophylla
Hma1.2p1_1289F.1_g273350 Hydrangea macrophylla
HPP92_020598 Vanilla planifolia
Hund02813 Selenicereus undatus
Hund09491 Selenicereus undatus
Lalb_Chr04g0254561 Lupinus albus
Lalb_Chr10g0100241 Lupinus albus
Lalb_Chr13g0294071 Lupinus albus
Lalb_Chr17g0342311 Lupinus albus
Lj1A1167T62 Lonicera japonica
Lj2A213G19 Lonicera japonica
Lj3g0013554 Lotus japonicus
Lj3g0025375 Lotus japonicus
Lsat_1_v5_gn_5_176360 Lactuca sativa
Lsat_1_v5_gn_8_98541 Lactuca sativa
Lsat_1_v5_gn_9_17121 Lactuca sativa
Manes.12G057100 Manihot esculenta
Manes.13G057300 Manihot esculenta
Manes.15G125700 Manihot esculenta
Mapoly0027s0148 Marchantia polymorpha
MBI18_g11214_MAGBIO Magnolia biondii
MBI18_g32438_MAGBIO Magnolia biondii
MD05G1152100 Malus domestica
MD10G1146700 Malus domestica
MD10G1256400 Malus domestica
Medtr8g028015 Medicago truncatula
Medtr8g079890 Medicago truncatula
MELO3C012715.2 Cucumis melo
Migut.C01131 Erythranthe guttata
Migut.N00683 Erythranthe guttata
MSTRG.1444 Avicennia marina
MSTRG.18512 Avicennia marina
Nitab4.5_0000315g0180 Nicotiana tabacum
Nitab4.5_0001177g0050 Nicotiana tabacum
Nitab4.5_0001191g0030 Nicotiana tabacum
Nitab4.5_0001348g0120 Nicotiana tabacum
Nitab4.5_0002311g0160 Nicotiana tabacum
Nitab4.5_0002641g0050 Nicotiana tabacum
Nitab4.5_0004982g0030 Nicotiana tabacum
Nitab4.5_0006647g0020 Nicotiana tabacum
Nn3g20294 Nelumbo nucifera
Nn4g26645 Nelumbo nucifera
Oeu003680.1 Olea europaea
Oeu049578.2 Olea europaea
Os03g0641700 Oryza sativa ssp. japonica
Os12g0614000 Oryza sativa ssp. japonica
Peaxi162Scf00045g00233 Petunia axillaris
Peaxi162Scf00315g00048 Petunia axillaris
Peaxi162Scf00372g00512 Petunia axillaris
PGR044G2296 Punica granatum
PGR083G0267 Punica granatum
PGSC0003DMG400020656 Solanum tuberosum
PGSC0003DMG400027668 Solanum tuberosum
PGSC0003DMG401029009 Solanum tuberosum
Phvul.002G177400 Phaseolus vulgaris
Phvul.010G110800 Phaseolus vulgaris
Potri.004G193800 Populus trichocarpa
Potri.009G156200 Populus trichocarpa
Pp3c17_13210 Physcomitrium patens
Pp3c1_36570 Physcomitrium patens
Pp3c2_5100 Physcomitrium patens
Prupe.4G087000 Prunus persica
Prupe.4G087200 Prunus persica
Prupe.8G184800 Prunus persica
Psat4g158640 Pisum sativum
Psat7g080200 Pisum sativum
PSO063G2743 Papaver somniferum
PSO339G3897 Papaver somniferum
PSO339G4119 Papaver somniferum
PSO513G0110 Papaver somniferum
QL05p054388 Quercus lobata
QL09p045652 Quercus lobata
RcHm_v2.0_Chr5g0015061 Rosa chinensis
RcHm_v2.0_Chr6g0281841 Rosa chinensis
Rhsim01G0246800 Rhododendron simsii
Rhsim13G0055200 Rhododendron simsii
Sabra04G0132000 Salix brachista
Sabra09G0122400 Salix brachista
Sc05g0001620 Simmondsia chinensis
Sc17g0001480 Simmondsia chinensis
Sed0013263 Sechium edule
Sed0020139 Sechium edule
SEGI_10342 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10463 Striga asiatica
SGA_v2.0_scaffold95G28694 Striga asiatica
SHI10214 Sapria himalayana
Solyc06g007660.2 Solanum lycopersicum
Solyc06g082900.3 Solanum lycopersicum
Solyc09g020010.2 Solanum lycopersicum
Sopen06g002560 Solanum pennellii
Sopen06g034260 Solanum pennellii
Sopen09g017930 Solanum pennellii
Sp6g24930 Schrenkiella parvula
Sp6g31410 Schrenkiella parvula
TAR362G0400 Trochodendron aralioides
TAR629G2431 Trochodendron aralioides
THA.LOC104799143 Tarenaya hassleriana
THA.LOC104826458 Tarenaya hassleriana
Thecc.01G205900 Theobroma cacao
Thecc.02G009700 Theobroma cacao
TPR.G1118 Trifolium pratense
TPR.G36097 Trifolium pratense
TPR.G9585 Trifolium pratense
TWI18G1456 Tripterygium wilfordii
TWI36G0059 Tripterygium wilfordii
TWI75G1171 Tripterygium wilfordii
unitig_0.g424 Utricularia gibba
vmacro02843 Vaccinium macrocarpon
vmacro14678 Vaccinium macrocarpon
VMungo0331G0536 Vigna mungo
Zm00001eb031730 Zea mays
Zm00001eb042760 Zea mays
Zm00001eb136170 Zea mays

User provided reference genes

Program Settings