Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18020 Brassica napus
A03p56930 Brassica napus
A08p20710 Brassica napus
A10p12470 Brassica napus
Aa31LG3G11190 Aethionema arabicum
Aa31LG5G12150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.84 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4677 Anthoceros agrestis
Actinidia05063 Actinidia chinensis
Actinidia10750 Actinidia chinensis
Actinidia25179 Actinidia chinensis
Actinidia32281 Actinidia chinensis
Ah.04g166160 Amaranthus hybridus
Ah.06g182260 Amaranthus hybridus
AL7G26050 Arabidopsis lyrata
AL8G30750 Arabidopsis lyrata
Aqoxy1G02868 Aquilegia oxysepala
Aqoxy1G04146 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0XB6C7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FV0UX9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M94QCZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WGP9BM Arachis hypogaea
AT4G26780 Arabidopsis thaliana
AT5G55200 Arabidopsis thaliana
ATR0697G224 Amborella trichopoda
ATR0745G094 Amborella trichopoda
Atru.chr2.3527 Acer truncatum
Atru.chr2.3547 Acer truncatum
AUR62000291 Chenopodium quinoa
AUR62006635 Chenopodium quinoa
AUR62015879 Chenopodium quinoa
AUR62020344 Chenopodium quinoa
BcaB03g12509 Brassica carinata
BcaB08g35882 Brassica carinata
BcaC01g06353 Brassica carinata
BcaC04g20260 Brassica carinata
BcaC06g32727 Brassica carinata
BcaC07g38251 Brassica carinata
BcaC09g52265 Brassica carinata
BolC3t14079H Brassica oleracea
BolC7t45999H Brassica oleracea
BolC8t48674H Brassica oleracea
BolC9t57448H Brassica oleracea
BraA01t01757Z Brassica rapa
BraA03t14763Z Brassica rapa
BraA08t34025Z Brassica rapa
BraA10t43340Z Brassica rapa
C01p22840 Brassica napus
C07p55140 Brassica napus
C08p09970 Brassica napus
C09p45790 Brassica napus
CAN.G1192.1 Capsicum annuum
CAN.G337.60 Capsicum annuum
CANSAT11G0689 Cannabis sativa
CARHR234400 Cardamine hirsuta
CARHR268560 Cardamine hirsuta
Carub.0007s1406 Capsella rubella
Carub.0008s1555 Capsella rubella
Ca_14765_v3 Cicer arietinum L.
CBR_g3171 Chara braunii
Cc05_g14280 Coffea canephora
CDE02G2896 Ceratophyllum demersum
CDE04G3046 Ceratophyllum demersum
CDE05G1473 Ceratophyllum demersum
CDE07G0626 Ceratophyllum demersum
Cfa022581 Carpinus fangiana
Ciclev10008685m.g Citrus clementina
CiPaw.11G194500 Carya illinoinensis
CiPaw.12G133500 Carya illinoinensis
ClCG09G011060 Citrullus lanatus
ClCG10G005130 Citrullus lanatus
COL.COLO4_09731 Corchorus olitorius
Cpa.g.sc284.7 Carica papaya
Cre08.g370450 Chlamydomonas reinhardtii
CsaV3_3G004810 Cucumis sativus L.
CSS0021209 Camellia sinensis var. sinensis
CSS0032043 Camellia sinensis var. sinensis
CSS0040957 Camellia sinensis var. sinensis
CSS0048103 Camellia sinensis var. sinensis
DCAR_016649 Daucus carota
DCAR_017107 Daucus carota
Dinv05562 Davidia involucrata
Dinv07389 Davidia involucrata
Dinv22234 Davidia involucrata
Duzib170G0287 Durio zibethinus
Duzib213G0933 Durio zibethinus
ECA240G0007 Erigeron canadensis
ECA246G0514 Erigeron canadensis
ECA246G1539 Erigeron canadensis
EL10Ac4g07694 Beta vulgaris
Eucgr.F00651 Eucalyptus grandis
Eucgr.F03503 Eucalyptus grandis
FAN11G0286 Fragaria x ananassa
FAN16G3062 Fragaria x ananassa
FAN21G4058 Fragaria x ananassa
FAN25G0830 Fragaria x ananassa
FvH4_3g23521 Fragaria vesca
Glyma.02G294600 Glycine max
Glyma.08G322000 Glycine max
Glyma.18G090400 Glycine max
Gohir.A01G084300 Gossypium hirsutum
Gohir.A04G011900 Gossypium hirsutum
Gohir.A11G278100 Gossypium hirsutum
Gohir.D01G070700 Gossypium hirsutum
Gohir.D05G374700 Gossypium hirsutum
Gohir.D11G288200 Gossypium hirsutum
Gorai.002G093400 Gossypium raimondii
Gorai.007G312000 Gossypium raimondii
Gorai.009G443600 Gossypium raimondii
GSVIVG01037720001 Vitis vinifera
HanXRQChr03g0076841 Helianthus annuus
HanXRQChr13g0391701 Helianthus annuus
HanXRQChr13g0391731 Helianthus annuus
HanXRQChr13g0408231 Helianthus annuus
HanXRQChr16g0510651 Helianthus annuus
Haze_09744 Corylus avellana
Hma1.2p1_1332F.1_g276120 Hydrangea macrophylla
Hma1.2p1_1402F.1_g281050 Hydrangea macrophylla
HPP92_003834 Vanilla planifolia
HPP92_020521 Vanilla planifolia
Hund01962 Selenicereus undatus
Hund23199 Selenicereus undatus
Lalb_Chr04g0248181 Lupinus albus
Lalb_Chr15g0081751 Lupinus albus
Lj1A880T60 Lonicera japonica
Lj6g0004996 Lotus japonicus
Lj8A173T71 Lonicera japonica
LjContig00272g0011671 Lotus japonicus
Lsat_1_v5_gn_5_2460 Lactuca sativa
Lsat_1_v5_gn_8_96821 Lactuca sativa
Lsat_1_v5_gn_9_92001 Lactuca sativa
Manes.03G136800 Manihot esculenta
Mapoly0067s0028 Marchantia polymorpha
MBI19_g29439_MAGBIO Magnolia biondii
MCO14G019 Micromonas commoda
MCO14G106 Micromonas commoda
MD03G1193500 Malus domestica
MD11G1209700 Malus domestica
Medtr3g054220 Medicago truncatula
Medtr5g093770 Medicago truncatula
MELO3C014179.2 Cucumis melo
MELO3C028990.2 Cucumis melo
Migut.H01793 Erythranthe guttata
Migut.M01710 Erythranthe guttata
Migut.N01574 Erythranthe guttata
MSTRG.12996 Avicennia marina
MSTRG.14461 Avicennia marina
Nitab4.5_0000168g0060 Nicotiana tabacum
Nitab4.5_0005833g0010 Nicotiana tabacum
Nn1g03344 Nelumbo nucifera
Nn1g07340 Nelumbo nucifera
Oeu005517.1 Olea europaea
Oeu005988.1 Olea europaea
Oeu026381.1 Olea europaea
Os08g0338700 Oryza sativa ssp. japonica
Os09g0284400 Oryza sativa ssp. japonica
Peaxi162Scf00015g03116 Petunia axillaris
Peaxi162Scf00235g00623 Petunia axillaris
Peaxi162Scf00339g01121 Petunia axillaris
PGR031G3662 Punica granatum
PGSC0003DMG400012858 Solanum tuberosum
PGSC0003DMG400022301 Solanum tuberosum
Phvul.008G271400 Phaseolus vulgaris
Phvul.009G196500 Phaseolus vulgaris
Potri.011G089000 Populus trichocarpa
Potri.015G065800 Populus trichocarpa
Pp3c16_8190 Physcomitrium patens
Pp3c22_1060 Physcomitrium patens
PRCOL_00000191 Prasinoderma coloniale
Prupe.4G223200 Prunus persica
Psat5g176720 Pisum sativum
PSO210G0006 Papaver somniferum
PSO302G0265 Papaver somniferum
QL08p007445 Quercus lobata
RcHm_v2.0_Chr5g0041521 Rosa chinensis
Rhsim04G0016600 Rhododendron simsii
Rhsim04G0016700 Rhododendron simsii
Rhsim04G0017400 Rhododendron simsii
Rhsim06G0223200 Rhododendron simsii
RhsimUnG0247900 Rhododendron simsii
Sabra15G0091000 Salix brachista
SalBow8G2899 Salvia bowleyana
Sc03g0008340 Simmondsia chinensis
Sc16g0005750 Simmondsia chinensis
Sed0003517 Sechium edule
Sed0010116 Sechium edule
SEGI_05423 Sequoiadendron giganteum
SEGI_23001 Sequoiadendron giganteum
SGA_v2.0_scaffold8G04368 Striga asiatica
SGA_v2.0_scaffold97G29133 Striga asiatica
SMO367G0619 Selaginella moellendorffii
Solyc07g064930.3 Solanum lycopersicum
Solyc10g019205.1 Solanum lycopersicum
Solyc12g014470.2 Solanum lycopersicum
Sopen07g033130 Solanum pennellii
Sopen10g012420 Solanum pennellii
Sopen11g021950 Solanum pennellii
Sopen12g007350 Solanum pennellii
Sp6g17130 Schrenkiella parvula
Sp7g24760 Schrenkiella parvula
TAR624G1407 Trochodendron aralioides
TAR629G0320 Trochodendron aralioides
TAR720G0005 Trochodendron aralioides
THA.LOC104811631 Tarenaya hassleriana
Thecc.07G028500 Theobroma cacao
Thhalv10014177m.g Eutrema salsugineum
Thhalv10026197m.g Eutrema salsugineum
TPR.G240 Trifolium pratense
TPR.G32246 Trifolium pratense
TPR.G35348 Trifolium pratense
TWI38G0452 Tripterygium wilfordii
TWI39G1144 Tripterygium wilfordii
unitig_61.g26145 Utricularia gibba
unitig_744.g24495 Utricularia gibba
vmacro04673 Vaccinium macrocarpon
vmacro09692 Vaccinium macrocarpon
vmacro09693 Vaccinium macrocarpon
vmacro15260 Vaccinium macrocarpon
vmacro15263 Vaccinium macrocarpon
vmacro22309 Vaccinium macrocarpon
vmacro22312 Vaccinium macrocarpon
vmacro22592 Vaccinium macrocarpon
VMungo0647G2242 Vigna mungo
VMungo1309G0876 Vigna mungo
Zm00001eb097390 Zea mays
Zm00001eb177440 Zea mays

User provided reference genes

Program Settings