Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p07630 Brassica napus
A04p10290 Brassica napus
A10p22810 Brassica napus
Aa31LG11G13370 Aethionema arabicum
Aa31LG5G13120 Aethionema arabicum
Aa31LG9G17780 Aethionema arabicum
Actinidia10435 Actinidia chinensis
Actinidia19645 Actinidia chinensis
Actinidia40009 Actinidia chinensis
Ah.04g159330 Amaranthus hybridus
Ah.06g195230 Amaranthus hybridus
Ah.07g202870 Amaranthus hybridus
AL3G12010 Arabidopsis lyrata
AL6G27140 Arabidopsis lyrata
AL7G45430 Arabidopsis lyrata
Aqoxy6G00724 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DC3F9H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MS52HJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XC1M64 Arachis hypogaea
AT3G02640 Arabidopsis thaliana
AT5G16250 Arabidopsis thaliana
AT5G36710 Arabidopsis thaliana
AT5G36800 Arabidopsis thaliana
ATR0743G250 Amborella trichopoda
Atru.chr2.213 Acer truncatum
Atru.chr4.1462 Acer truncatum
Atru.chr4.3018 Acer truncatum
Atru.chr4.3024 Acer truncatum
AUR62000268 Chenopodium quinoa
AUR62006616 Chenopodium quinoa
AUR62023780 Chenopodium quinoa
BcaB01g04996 Brassica carinata
BcaB06g27037 Brassica carinata
BcaB08g36859 Brassica carinata
BcaC02g09529 Brassica carinata
BcaC03g13989 Brassica carinata
BcaC04g18904 Brassica carinata
BcaC06g35329 Brassica carinata
BcaC09g49426 Brassica carinata
BolC1t03643H Brassica oleracea
BolC2t07325H Brassica oleracea
BolC2t11093H Brassica oleracea
BolC3t13382H Brassica oleracea
BolC4t25961H Brassica oleracea
BolC7t42237H Brassica oleracea
BolC9t58915H Brassica oleracea
BraA03t10091Z Brassica rapa
BraA04t16700Z Brassica rapa
BraA10t44348Z Brassica rapa
C01p36830 Brassica napus
C01p36840 Brassica napus
C03p08870 Brassica napus
C04p43800 Brassica napus
C06p35190 Brassica napus
C07p17330 Brassica napus
CAN.G321.1 Capsicum annuum
CAN.G694.29 Capsicum annuum
CANSAT64G2134 Cannabis sativa
CARHR076640 Cardamine hirsuta
CARHR197060 Cardamine hirsuta
CARHR216380 Cardamine hirsuta
Carub.0003s0175 Capsella rubella
Carub.0006s1444 Capsella rubella
Carub.0007s3205 Capsella rubella
Ca_08017_v3 Cicer arietinum L.
Cc03_g14440 Coffea canephora
Cc09_g04130 Coffea canephora
CDE02G2923 Ceratophyllum demersum
CDE09G1187 Ceratophyllum demersum
Cfa006222 Carpinus fangiana
Ciclev10002603m.g Citrus clementina
CiPaw.01G169100 Carya illinoinensis
CiPaw.08G111800 Carya illinoinensis
ClCG10G004090 Citrullus lanatus
ClCG11G010020 Citrullus lanatus
COL.COLO4_22921 Corchorus olitorius
COL.COLO4_38122 Corchorus olitorius
Cpa.g.sc144.14 Carica papaya
CsaV3_2G010270 Cucumis sativus L.
CSS0003848 Camellia sinensis var. sinensis
CSS0035331 Camellia sinensis var. sinensis
DCAR_002086 Daucus carota
DCAR_005454 Daucus carota
DCAR_023763 Daucus carota
Dinv17136 Davidia involucrata
Duzib106G0773 Durio zibethinus
Duzib151G0947 Durio zibethinus
Duzib177G0566 Durio zibethinus
Duzib212G0081 Durio zibethinus
ECA248G1212 Erigeron canadensis
EL10Ac3g06106 Beta vulgaris
EL10Ac4g10028 Beta vulgaris
EL10Ac4g10029 Beta vulgaris
Eucgr.B01456 Eucalyptus grandis
FAN02G3480 Fragaria x ananassa
FAN09G0783 Fragaria x ananassa
FvH4_6g00070 Fragaria vesca
Glyma.09G247700 Glycine max
Glyma.18G245100 Glycine max
Gohir.A02G007600 Gossypium hirsutum
Gohir.A09G213612 Gossypium hirsutum
Gohir.A10G144800 Gossypium hirsutum
Gohir.A11G305000 Gossypium hirsutum
Gohir.D02G007400 Gossypium hirsutum
Gohir.D09G212500 Gossypium hirsutum
Gohir.D10G122200 Gossypium hirsutum
Gohir.D11G320400 Gossypium hirsutum
Gorai.005G008800 Gossypium raimondii
Gorai.006G232300 Gossypium raimondii
Gorai.007G350600 Gossypium raimondii
Gorai.011G134400 Gossypium raimondii
GSVIVG01007183001 Vitis vinifera
HanXRQChr04g0115331 Helianthus annuus
HanXRQChr04g0115361 Helianthus annuus
HanXRQChr11g0343061 Helianthus annuus
Haze_04613 Corylus avellana
Hma1.2p1_0620F.1_g190470 Hydrangea macrophylla
HPP92_005579 Vanilla planifolia
HPP92_005596 Vanilla planifolia
HPP92_009180 Vanilla planifolia
Lalb_Chr01g0020631 Lupinus albus
Lj1g0004834 Lotus japonicus
Lj4g0001574 Lotus japonicus
Lj6P206T6 Lonicera japonica
Lj6P218T10 Lonicera japonica
Lsat_1_v5_gn_1_74141 Lactuca sativa
Lsat_1_v5_gn_1_74360 Lactuca sativa
Lsat_1_v5_gn_1_74380 Lactuca sativa
Lsat_1_v5_gn_1_74401 Lactuca sativa
Manes.01G016800 Manihot esculenta
Manes.12G001400 Manihot esculenta
Manes.13G000400 Manihot esculenta
MBI10_g13923_MAGBIO Magnolia biondii
MD00G1017200 Malus domestica
MD12G1261500 Malus domestica
Medtr7g080550 Medicago truncatula
Medtr8g081530 Medicago truncatula
MELO3C008682.2 Cucumis melo
MELO3C014080.2 Cucumis melo
Migut.F01840 Erythranthe guttata
Migut.F02089 Erythranthe guttata
MSTRG.9240 Avicennia marina
Nitab4.5_0000971g0130 Nicotiana tabacum
Nitab4.5_0001003g0190 Nicotiana tabacum
Nitab4.5_0003928g0010 Nicotiana tabacum
Nitab4.5_0007029g0030 Nicotiana tabacum
Nitab4.5_0009685g0030 Nicotiana tabacum
Nn1g09555 Nelumbo nucifera
Nn1g09556 Nelumbo nucifera
Nn7g37534 Nelumbo nucifera
Oeu001221.1 Olea europaea
Oeu034711.1 Olea europaea
Oeu062032.1 Olea europaea
Os01g0896400 Oryza sativa ssp. japonica
Os02g0738350 Oryza sativa ssp. japonica
Os04g0496300 Oryza sativa ssp. japonica
Os05g0507000 Oryza sativa ssp. japonica
Os05g0564601 Oryza sativa ssp. japonica
Peaxi162Scf00156g00007 Petunia axillaris
Peaxi162Scf00254g00068 Petunia axillaris
PGR031G3401 Punica granatum
PGSC0003DMG400016176 Solanum tuberosum
PGSC0003DMG400023170 Solanum tuberosum
PGSC0003DMG400023364 Solanum tuberosum
Phvul.008G051600 Phaseolus vulgaris
Potri.008G078000 Populus trichocarpa
Potri.010G179300 Populus trichocarpa
Potri.013G127900 Populus trichocarpa
Potri.019G113300 Populus trichocarpa
Prupe.6G365300 Prunus persica
Psat3g101840 Pisum sativum
Psat7g075120 Pisum sativum
PSO017G0426 Papaver somniferum
PSO675G8294 Papaver somniferum
QL07p048121 Quercus lobata
QL10p016611 Quercus lobata
RcHm_v2.0_Chr3g0447401 Rosa chinensis
Rhsim04G0100700 Rhododendron simsii
Rhsim05G0164100 Rhododendron simsii
Sabra08G0058000 Salix brachista
Sabra10G0137400 Salix brachista
SalBow1G4141 Salvia bowleyana
Sc09g0001330 Simmondsia chinensis
Sc16g0010660 Simmondsia chinensis
Sc19g0002270 Simmondsia chinensis
Sed0011717 Sechium edule
Sed0021613 Sechium edule
SEGI_14451 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33209 Striga asiatica
SGA_v2.0_scaffold27G11699 Striga asiatica
SHI13704 Sapria himalayana
Solyc05g055680.4 Solanum lycopersicum
Solyc08g014350.1 Solanum lycopersicum
Sopen05g034100 Solanum pennellii
Sopen08g005280 Solanum pennellii
Sopen11g004470 Solanum pennellii
Sp3g01670 Schrenkiella parvula
Sp6g27910 Schrenkiella parvula
Sp7g05680 Schrenkiella parvula
TAR362G1216 Trochodendron aralioides
TAR633G0945 Trochodendron aralioides
THA.LOC104802430 Tarenaya hassleriana
THA.LOC104822001 Tarenaya hassleriana
THA.LOC104827167 Tarenaya hassleriana
Thecc.04G163900 Theobroma cacao
Thecc.05G112700 Theobroma cacao
Thhalv10015375m.g Eutrema salsugineum
Thhalv10021586m.g Eutrema salsugineum
Thhalv10027952m.g Eutrema salsugineum
TPR.G11810 Trifolium pratense
TPR.G22750 Trifolium pratense
TWI15G1086 Tripterygium wilfordii
TWI18G1187 Tripterygium wilfordii
TWI36G0840 Tripterygium wilfordii
TWI63G0816 Tripterygium wilfordii
TWI75G0654 Tripterygium wilfordii
unitig_37.g12274 Utricularia gibba
unitig_37.g12275 Utricularia gibba
unitig_46.g18571 Utricularia gibba
unitig_46.g18572 Utricularia gibba
vmacro08166 Vaccinium macrocarpon
VMungo1383G0399 Vigna mungo
Zm00001eb078560 Zea mays
Zm00001eb144800 Zea mays
Zm00001eb292280 Zea mays
Zm00001eb365730 Zea mays
Zm00001eb425710 Zea mays

User provided reference genes

Program Settings