Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p20160 Brassica napus
A09p59770 Brassica napus
Aa31LG4G16280 Aethionema arabicum
Aa31LG7G3440 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3810 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1285 Anthoceros agrestis
Actinidia04883 Actinidia chinensis
Actinidia19015 Actinidia chinensis
Actinidia37622 Actinidia chinensis
Ah.02g113830 Amaranthus hybridus
AL1G31130 Arabidopsis lyrata
AL3G39780 Arabidopsis lyrata
AL5G26720 Arabidopsis lyrata
Aqoxy3G03426 Aquilegia oxysepala
Aqoxy3G03516 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0SW4QZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.98DFWP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NN3VVN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W106X3 Arachis hypogaea
AT1G18680 Arabidopsis thaliana
AT3G47490 Arabidopsis thaliana
ATR0564G193 Amborella trichopoda
ATR0730G144 Amborella trichopoda
Atru.chr9.243 Acer truncatum
Atru.chr9.307 Acer truncatum
AUR62008426 Chenopodium quinoa
AUR62008472 Chenopodium quinoa
AUR62021620 Chenopodium quinoa
AUR62021669 Chenopodium quinoa
BcaB01g00918 Brassica carinata
BcaB03g14490 Brassica carinata
BcaC01g01815 Brassica carinata
BcaC01g01816 Brassica carinata
BcaC07g41308 Brassica carinata
BolC3t19456H Brassica oleracea
BolC8t51870H Brassica oleracea
BraA06t25100Z Brassica rapa
BraA09t41354Z Brassica rapa
C03p71660 Brassica napus
C08p43150 Brassica napus
CAN.G370.13 Capsicum annuum
CAN.G4.25 Capsicum annuum
CANSAT80G1295 Cannabis sativa
CANSAT80G2319 Cannabis sativa
CARHR019310 Cardamine hirsuta
CARHR156130 Cardamine hirsuta
Carub.0001s1831 Capsella rubella
Carub.0005s1358 Capsella rubella
Ca_21802_v3 Cicer arietinum L.
Ca_21815_v3 Cicer arietinum L.
CBR_g24411 Chara braunii
CBR_g30029 Chara braunii
Cc04_g14320 Coffea canephora
Cc04_g16500 Coffea canephora
CDE02G1609 Ceratophyllum demersum
CDE04G1164 Ceratophyllum demersum
Cfa018932 Carpinus fangiana
Ciclev10022397m.g Citrus clementina
Ciclev10022490m.g Citrus clementina
CiPaw.11G045600 Carya illinoinensis
CiPaw.11G048100 Carya illinoinensis
ClCG06G015940 Citrullus lanatus
ClCG06G016150 Citrullus lanatus
COL.COLO4_35582 Corchorus olitorius
COL.COLO4_36698 Corchorus olitorius
Cpa.g.sc111.14 Carica papaya
Cpa.g.sc13.303 Carica papaya
CsaV3_1G002400 Cucumis sativus L.
CsaV3_1G002610 Cucumis sativus L.
CSS0025314 Camellia sinensis var. sinensis
CSS0035239 Camellia sinensis var. sinensis
CSS0036571 Camellia sinensis var. sinensis
DCAR_001626 Daucus carota
DCAR_026032 Daucus carota
Dinv10641 Davidia involucrata
Dinv10667 Davidia involucrata
Dinv10668 Davidia involucrata
Dinv38721 Davidia involucrata
Dinv38754 Davidia involucrata
Duzib068G0828 Durio zibethinus
Duzib205G0687 Durio zibethinus
Duzib205G0885 Durio zibethinus
ECA232G4732 Erigeron canadensis
EL10Ac5g11030 Beta vulgaris
EL10Ac5g11072 Beta vulgaris
Eucgr.B00552 Eucalyptus grandis
Eucgr.K02481 Eucalyptus grandis
FAN08G0457 Fragaria x ananassa
FAN08G2053 Fragaria x ananassa
FAN13G3300 Fragaria x ananassa
FAN18G0620 Fragaria x ananassa
FAN18G4504 Fragaria x ananassa
FvH4_5g14460 Fragaria vesca
FvH4_5g14820 Fragaria vesca
Glyma.05G024300 Glycine max
Glyma.17G101100 Glycine max
Glyma.17G103000 Glycine max
Gohir.A01G205901 Gossypium hirsutum
Gohir.A12G178200 Gossypium hirsutum
Gohir.A12G179800 Gossypium hirsutum
Gohir.D01G195266 Gossypium hirsutum
Gohir.D12G180600 Gossypium hirsutum
Gohir.D12G182400 Gossypium hirsutum
Gorai.002G239500 Gossypium raimondii
Gorai.008G193800 Gossypium raimondii
Gorai.008G195700 Gossypium raimondii
GSVIVG01007955001 Vitis vinifera
GSVIVG01007991001 Vitis vinifera
HanXRQChr15g0481621 Helianthus annuus
HanXRQChr16g0503091 Helianthus annuus
Haze_07316 Corylus avellana
Haze_07660 Corylus avellana
Hma1.2p1_0322F.1_g124980 Hydrangea macrophylla
Hma1.2p1_1936F.1_g308250 Hydrangea macrophylla
Hma1.2p1_2779F.1_g328310 Hydrangea macrophylla
Hma1.2p1_2779F.1_g328315 Hydrangea macrophylla
Hma1.2p1_2779F.1_g328320 Hydrangea macrophylla
HPP92_017638 Vanilla planifolia
HPP92_020457 Vanilla planifolia
HPP92_024502 Vanilla planifolia
HPP92_025656 Vanilla planifolia
HPP92_026177 Vanilla planifolia
Hund02619 Selenicereus undatus
Hund02641 Selenicereus undatus
Lalb_Chr13g0303041 Lupinus albus
Lalb_Chr13g0303171 Lupinus albus
Lj4g0013374 Lotus japonicus
Lj4g0026736 Lotus japonicus
Lj5A107G92 Lonicera japonica
Lj5A107T96 Lonicera japonica
Lj9A464G84 Lonicera japonica
Lsat_1_v5_gn_4_109440 Lactuca sativa
Lsat_1_v5_gn_5_21340 Lactuca sativa
Manes.06G088700 Manihot esculenta
Manes.14G079300 Manihot esculenta
Mapoly0023s0106 Marchantia polymorpha
Mapoly0068s0002 Marchantia polymorpha
MBI05_g02666_MAGBIO Magnolia biondii
MD06G1194600 Malus domestica
MD06G1198200 Malus domestica
MD14G1205900 Malus domestica
Medtr4g108710 Medicago truncatula
Medtr4g109110 Medicago truncatula
MELO3C017179.2 Cucumis melo
MELO3C017197.2 Cucumis melo
Migut.D01810 Erythranthe guttata
Migut.I00223 Erythranthe guttata
Migut.L00861 Erythranthe guttata
MSTRG.22993 Avicennia marina
MSTRG.4434 Avicennia marina
Nitab4.5_0000121g0130 Nicotiana tabacum
Nitab4.5_0001997g0010 Nicotiana tabacum
Nitab4.5_0005170g0020 Nicotiana tabacum
Nitab4.5_0008485g0020 Nicotiana tabacum
Nn4g23200 Nelumbo nucifera
Nn7g37963 Nelumbo nucifera
Oeu002091.1 Olea europaea
Oeu031810.1 Olea europaea
Oeu046986.2 Olea europaea
Os03g0169800 Oryza sativa ssp. japonica
Os10g0335200 Oryza sativa ssp. japonica
Peaxi162Scf00106g00517 Petunia axillaris
Peaxi162Scf01256g00222 Petunia axillaris
PGR044G2470 Punica granatum
PGR083G0559 Punica granatum
PGSC0003DMG400015000 Solanum tuberosum
PGSC0003DMG400019990 Solanum tuberosum
PGSC0003DMG400027359 Solanum tuberosum
Phvul.003G187600 Phaseolus vulgaris
Phvul.003G189200 Phaseolus vulgaris
Potri.009G004200 Populus trichocarpa
Potri.012G067700 Populus trichocarpa
Pp3c14_14920 Physcomitrium patens
Pp3c18_10100 Physcomitrium patens
Prupe.5G194700 Prunus persica
Prupe.5G199100 Prunus persica
Psat4g048840 Pisum sativum
Psat4g050080 Pisum sativum
PSO478G0284 Papaver somniferum
QL10p017175 Quercus lobata
QL10p017973 Quercus lobata
RcHm_v2.0_Chr7g0181571 Rosa chinensis
RcHm_v2.0_Chr7g0182201 Rosa chinensis
Rhsim08G0154200 Rhododendron simsii
Rhsim12G0153500 Rhododendron simsii
Sabra09G0001900 Salix brachista
Sabra12G0047700 Salix brachista
Sc04g0002700 Simmondsia chinensis
Sc10g0009810 Simmondsia chinensis
Sed0001146 Sechium edule
Sed0018884 Sechium edule
SEGI_32639 Sequoiadendron giganteum
SEGI_39594 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31910 Striga asiatica
SGA_v2.0_scaffold313G48319 Striga asiatica
SGA_v2.0_scaffold7G04061 Striga asiatica
SHI22818 Sapria himalayana
SMO337G0021 Selaginella moellendorffii
Solyc07g021330.3 Solanum lycopersicum
Solyc12g036250.2 Solanum lycopersicum
Sopen00g009830 Solanum pennellii
Sopen07g010220 Solanum pennellii
Sopen12g016470 Solanum pennellii
Sopen12g025700 Solanum pennellii
Sp1g16660 Schrenkiella parvula
Sp5g14390 Schrenkiella parvula
TAR374G1100 Trochodendron aralioides
TAR629G0234 Trochodendron aralioides
TAR629G1820 Trochodendron aralioides
THA.LOC104812097 Tarenaya hassleriana
THA.LOC104818259 Tarenaya hassleriana
Thecc.03G090200 Theobroma cacao
Thecc.03G095000 Theobroma cacao
Thhalv10008859m.g Eutrema salsugineum
Thhalv10010677m.g Eutrema salsugineum
TPR.G2033 Trifolium pratense
TPR.G9253 Trifolium pratense
TWI60G0174 Tripterygium wilfordii
TWI60G1332 Tripterygium wilfordii
unitig_0.g25 Utricularia gibba
unitig_750.g28508 Utricularia gibba
vmacro16521 Vaccinium macrocarpon
vmacro17535 Vaccinium macrocarpon
VMungo1215G1190 Vigna mungo
VMungo1215G3048 Vigna mungo
Zm00001eb005390 Zea mays
Zm00001eb224060 Zea mays

User provided reference genes

Program Settings