Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p26820 Brassica napus
A03p01460 Brassica napus
A10p32240 Brassica napus
Aa31LG1G21390 Aethionema arabicum
Aa31LG9G12000 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2055 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4756 Anthoceros agrestis
Actinidia05425 Actinidia chinensis
Actinidia23023 Actinidia chinensis
Ah.08g210550 Amaranthus hybridus
AL6G13460 Arabidopsis lyrata
AL6G43720 Arabidopsis lyrata
Aqoxy4G02772 Aquilegia oxysepala
Aqoxy5G02608 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.21P17U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4X8KJH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.63YKCR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JVNF3F Arachis hypogaea
AT4G10000 Arabidopsis thaliana
AT5G03880 Arabidopsis thaliana
ATR0776G099 Amborella trichopoda
ATR1089G091 Amborella trichopoda
Atru.chr13.2419 Acer truncatum
Atru.chr8.1527 Acer truncatum
AUR62006187 Chenopodium quinoa
AUR62028521 Chenopodium quinoa
BcaB01g05776 Brassica carinata
BcaB05g23929 Brassica carinata
BcaC03g16437 Brassica carinata
BcaC06g32091 Brassica carinata
BolC2t10306H Brassica oleracea
BolC3t12735H Brassica oleracea
BolC3t13330H Brassica oleracea
BolC9t60039H Brassica oleracea
BraA02t07689Z Brassica rapa
BraA02t07690Z Brassica rapa
BraA03t09525Z Brassica rapa
BraA10t45267Z Brassica rapa
C02p42610 Brassica napus
C03p01790 Brassica napus
C09p73050 Brassica napus
CAN.G397.53 Capsicum annuum
CANSAT25G2125 Cannabis sativa
CANSAT64G0205 Cannabis sativa
CARHR209380 Cardamine hirsuta
CARHR260600 Cardamine hirsuta
CARHR260860 Cardamine hirsuta
Carub.0006s0282 Capsella rubella
Carub.0006s2855 Capsella rubella
Ca_03916_v3 Cicer arietinum L.
Ca_13979_v3 Cicer arietinum L.
CBR_g37568 Chara braunii
Cc06_g05870 Coffea canephora
Cc10_g09190 Coffea canephora
CDE06G2555 Ceratophyllum demersum
CDE07G0492 Ceratophyllum demersum
CDE08G0919 Ceratophyllum demersum
Cfa008110 Carpinus fangiana
Cfa016613 Carpinus fangiana
Ciclev10012144m.g Citrus clementina
Ciclev10021013m.g Citrus clementina
CiPaw.04G011100 Carya illinoinensis
CiPaw.10G010100 Carya illinoinensis
ClCG10G018940 Citrullus lanatus
ClCG11G008840 Citrullus lanatus
COL.COLO4_24611 Corchorus olitorius
COL.COLO4_29725 Corchorus olitorius
Cpa.g.sc21.57 Carica papaya
Cpa.g.sc5.14 Carica papaya
Cre06.g261500 Chlamydomonas reinhardtii
CsaV3_2G033100 Cucumis sativus L.
CsaV3_3G037310 Cucumis sativus L.
CSS0023185 Camellia sinensis var. sinensis
CSS0044209 Camellia sinensis var. sinensis
CSS0047981 Camellia sinensis var. sinensis
DCAR_020745 Daucus carota
Dinv31689 Davidia involucrata
Dinv41797 Davidia involucrata
Duzib093G0165 Durio zibethinus
Duzib106G1381 Durio zibethinus
Duzib128G0191 Durio zibethinus
Duzib268G0879 Durio zibethinus
ECA248G1469 Erigeron canadensis
EL10Ac7g16913 Beta vulgaris
Eucgr.F02962 Eucalyptus grandis
Eucgr.K02032 Eucalyptus grandis
FAN02G1538 Fragaria x ananassa
FAN05G4170 Fragaria x ananassa
FAN05G4542 Fragaria x ananassa
FAN08G2043 Fragaria x ananassa
FAN09G1444 Fragaria x ananassa
FAN14G2975 Fragaria x ananassa
FAN18G3951 Fragaria x ananassa
FvH4_5g33030 Fragaria vesca
FvH4_6g18820 Fragaria vesca
Glyma.04G255900 Glycine max
Glyma.13G154000 Glycine max
Glyma.U031117 Glycine max
Gohir.A01G206100 Gossypium hirsutum
Gohir.A05G252400 Gossypium hirsutum
Gohir.D01G195500 Gossypium hirsutum
Gohir.D05G254200 Gossypium hirsutum
Gorai.002G239700 Gossypium raimondii
Gorai.009G265800 Gossypium raimondii
GSVIVG01033851001 Vitis vinifera
GSVIVG01036436001 Vitis vinifera
HanXRQChr01g0010391 Helianthus annuus
Haze_13928 Corylus avellana
Haze_19617 Corylus avellana
Hma1.2p1_1032F.1_g250090 Hydrangea macrophylla
HPP92_000007 Vanilla planifolia
Hund19928 Selenicereus undatus
Lalb_Chr02g0154931 Lupinus albus
Lalb_Chr05g0228571 Lupinus albus
Lalb_Chr21g0315821 Lupinus albus
Lalb_Chr21g0315831 Lupinus albus
Lj2A138T45 Lonicera japonica
Lj3g0012239 Lotus japonicus
Lj5g0023671 Lotus japonicus
Lj9A701G49 Lonicera japonica
Lsat_1_v5_gn_5_164920 Lactuca sativa
Manes.08G025800 Manihot esculenta
Manes.18G121500 Manihot esculenta
Mapoly0035s0064 Marchantia polymorpha
Mapoly0060s0005 Marchantia polymorpha
MBI17_g08339_MAGBIO Magnolia biondii
MCO07G018 Micromonas commoda
MCO16G623 Micromonas commoda
MD12G1036800 Malus domestica
MD14G1023500 Malus domestica
MD15G1399300 Malus domestica
Medtr1g059970 Medicago truncatula
Medtr3g005720 Medicago truncatula
MELO3C008080.2 Cucumis melo
MELO3C028565.2 Cucumis melo
MELO3C029783.2 Cucumis melo
MELO3C032039.2 Cucumis melo
Migut.J01030 Erythranthe guttata
Migut.N00216 Erythranthe guttata
MSTRG.1583 Avicennia marina
MSTRG.5846 Avicennia marina
Nitab4.5_0000107g0140 Nicotiana tabacum
Nitab4.5_0001712g0030 Nicotiana tabacum
Nitab4.5_0006946g0020 Nicotiana tabacum
Nn1g02996 Nelumbo nucifera
Nn2g14167 Nelumbo nucifera
Oeu017681.1 Olea europaea
Oeu017733.1 Olea europaea
Os08g0558200 Oryza sativa ssp. japonica
Peaxi162Scf00096g00414 Petunia axillaris
Peaxi162Scf00404g00079 Petunia axillaris
Peaxi162Scf00688g00013 Petunia axillaris
Peaxi162Scf00688g00022 Petunia axillaris
PGR042G1111 Punica granatum
PGR142G0893 Punica granatum
PGSC0003DMG400010732 Solanum tuberosum
PGSC0003DMG401008955 Solanum tuberosum
PGSC0003DMG402008955 Solanum tuberosum
Phvul.005G001500 Phaseolus vulgaris
Phvul.007G227400 Phaseolus vulgaris
Potri.006G213000 Populus trichocarpa
Potri.013G102000 Populus trichocarpa
Pp3c3_12870 Physcomitrium patens
Pp3c8_16120 Physcomitrium patens
PRCOL_00000093 Prasinoderma coloniale
PRCOL_00000523 Prasinoderma coloniale
Prupe.1G546800 Prunus persica
Prupe.7G109400 Prunus persica
Psat1g000120 Pisum sativum
Psat6g081240 Pisum sativum
PSO339G1943 Papaver somniferum
PSO384G4335 Papaver somniferum
QL07p038951 Quercus lobata
QL09p004047 Quercus lobata
RcHm_v2.0_Chr3g0473831 Rosa chinensis
RcHm_v2.0_Chr7g0231111 Rosa chinensis
Rhsim03G0074800 Rhododendron simsii
Rhsim12G0004100 Rhododendron simsii
Sabra06G0164000 Salix brachista
Sabra13G0088200 Salix brachista
SalBow3G1828 Salvia bowleyana
Sc07g0005610 Simmondsia chinensis
Sed0018407 Sechium edule
SEGI_05033 Sequoiadendron giganteum
SEGI_06508 Sequoiadendron giganteum
SEGI_13672 Sequoiadendron giganteum
SGA_v2.0_scaffold31G12914 Striga asiatica
SMO115G0063 Selaginella moellendorffii
SMO115G0175 Selaginella moellendorffii
SMO115G0249 Selaginella moellendorffii
SMO115G0273 Selaginella moellendorffii
SMO115G0300 Selaginella moellendorffii
SMO115G0344 Selaginella moellendorffii
SMO119G0330 Selaginella moellendorffii
SMO119G0431 Selaginella moellendorffii
SMO119G0500 Selaginella moellendorffii
SMO228G0134 Selaginella moellendorffii
SMO271G0131 Selaginella moellendorffii
SMO308G0054 Selaginella moellendorffii
Solyc09g009820.4 Solanum lycopersicum
Sopen09g004580 Solanum pennellii
Sp6g07360 Schrenkiella parvula
Sp6g38850 Schrenkiella parvula
TAR381G0043 Trochodendron aralioides
TAR633G2736 Trochodendron aralioides
THA.LOC104813086 Tarenaya hassleriana
THA.LOC104827511 Tarenaya hassleriana
Thecc.05G089900 Theobroma cacao
Thecc.08G173000 Theobroma cacao
Thhalv10014048m.g Eutrema salsugineum
Thhalv10028854m.g Eutrema salsugineum
TPR.G25502 Trifolium pratense
TPR.G9898 Trifolium pratense
TWI23G0002 Tripterygium wilfordii
TWI74G1087 Tripterygium wilfordii
unitig_37.g13087 Utricularia gibba
unitig_744.g24699 Utricularia gibba
vmacro00926 Vaccinium macrocarpon
vmacro07410 Vaccinium macrocarpon
VMungo0720G1134 Vigna mungo
VMungo1080G1151 Vigna mungo
Zm00001eb039430 Zea mays
Zm00001eb039460 Zea mays
Zm00001eb039500 Zea mays
Zm00001eb039530 Zea mays
Zm00001eb082070 Zea mays
Zm00001eb176040 Zea mays

User provided reference genes

Program Settings