Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p33640 Brassica napus
A06p09750 Brassica napus
A06p42840 Brassica napus
A09p24740 Brassica napus
Aa31LG2G6910 Aethionema arabicum
Actinidia07767 Actinidia chinensis
Actinidia13406 Actinidia chinensis
Actinidia19904 Actinidia chinensis
Actinidia31928 Actinidia chinensis
Ah.03g138600 Amaranthus hybridus
AL1G25440 Arabidopsis lyrata
AL5G13600 Arabidopsis lyrata
Aqoxy3G00552 Aquilegia oxysepala
Aqoxy3G03750 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea
AT1G13650 Arabidopsis thaliana
AT2G03810 Arabidopsis thaliana
ATR0691G160 Amborella trichopoda
Atru.chr11.1558 Acer truncatum
AUR62003057 Chenopodium quinoa
AUR62007872 Chenopodium quinoa
BcaB02g06463 Brassica carinata
BcaB02g06488 Brassica carinata
BcaB03g16265 Brassica carinata
BcaB07g30644 Brassica carinata
BcaC03g17244 Brassica carinata
BcaC04g21446 Brassica carinata
BcaC05g25272 Brassica carinata
BcaC06g31142 Brassica carinata
BolC2t09912H Brassica oleracea
BolC2t11264H Brassica oleracea
BolC7t43953H Brassica oleracea
BolC9t56021H Brassica oleracea
BraA06t24164Z Brassica rapa
BraA06t27196Z Brassica rapa
BraA09t38060Z Brassica rapa
C02p51790 Brassica napus
C05p11460 Brassica napus
C09p31660 Brassica napus
CANSAT64G2528 Cannabis sativa
CANSAT80G0192 Cannabis sativa
CARHR146220 Cardamine hirsuta
Carub.0001s1338 Capsella rubella
Carub.0005s0297 Capsella rubella
Ca_05068_v3 Cicer arietinum L.
Cc04_g08270 Coffea canephora
Cc11_g11550 Coffea canephora
CDE02G2647 Ceratophyllum demersum
CDE05G3645 Ceratophyllum demersum
CDE10G0152 Ceratophyllum demersum
CDE10G0686 Ceratophyllum demersum
Ciclev10021731m.g Citrus clementina
Ciclev10031644m.g Citrus clementina
CiPaw.05G121600 Carya illinoinensis
CiPaw.06G095000 Carya illinoinensis
CiPaw.16G080200 Carya illinoinensis
ClCG05G023550 Citrullus lanatus
ClCG08G010610 Citrullus lanatus
COL.COLO4_27507 Corchorus olitorius
COL.COLO4_27800 Corchorus olitorius
Cpa.g.sc1.169 Carica papaya
CsaV3_5G033470 Cucumis sativus L.
CsaV3_6G033910 Cucumis sativus L.
CSS0010060 Camellia sinensis var. sinensis
CSS0010260 Camellia sinensis var. sinensis
CSS0030291 Camellia sinensis var. sinensis
DCAR_030058 Daucus carota
Dinv15582 Davidia involucrata
Dinv34020 Davidia involucrata
Dinv38641 Davidia involucrata
Duzib084G0521 Durio zibethinus
Duzib205G1035 Durio zibethinus
Duzib248G1661 Durio zibethinus
Duzib251G0179 Durio zibethinus
ECA232G3214 Erigeron canadensis
ECA233G1104 Erigeron canadensis
ECA234G4845 Erigeron canadensis
ECA246G4035 Erigeron canadensis
EL10Ac6g14672 Beta vulgaris
Eucgr.B03118 Eucalyptus grandis
Eucgr.G02421 Eucalyptus grandis
FAN07G1412 Fragaria x ananassa
FAN12G3072 Fragaria x ananassa
FAN13G2721 Fragaria x ananassa
FAN17G1716 Fragaria x ananassa
FAN18G0971 Fragaria x ananassa
FAN22G0063 Fragaria x ananassa
FvH4_4g29290 Fragaria vesca
FvH4_5g13400 Fragaria vesca
Glyma.01G064900 Glycine max
Glyma.02G122700 Glycine max
Glyma.08G270400 Glycine max
Gohir.A03G106600 Gossypium hirsutum
Gohir.A07G058700 Gossypium hirsutum
Gohir.A08G091150 Gossypium hirsutum
Gohir.A12G159500 Gossypium hirsutum
Gohir.A13G088100 Gossypium hirsutum
Gohir.D02G131800 Gossypium hirsutum
Gohir.D07G063600 Gossypium hirsutum
Gohir.D12G162800 Gossypium hirsutum
Gohir.D13G085500 Gossypium hirsutum
Gorai.001G067100 Gossypium raimondii
Gorai.005G147700 Gossypium raimondii
Gorai.008G175400 Gossypium raimondii
Gorai.013G097400 Gossypium raimondii
GSVIVG01008155001 Vitis vinifera
GSVIVG01010102001 Vitis vinifera
HanXRQChr08g0215591 Helianthus annuus
HanXRQChr12g0365071 Helianthus annuus
HanXRQChr15g0475601 Helianthus annuus
HanXRQChr16g0528681 Helianthus annuus
HanXRQChr17g0568661 Helianthus annuus
Haze_11858 Corylus avellana
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla
HPP92_015551 Vanilla planifolia
HPP92_018243 Vanilla planifolia
Hund09959 Selenicereus undatus
Lalb_Chr04g0255461 Lupinus albus
Lalb_Chr10g0099151 Lupinus albus
Lalb_Chr10g0099161 Lupinus albus
Lalb_Chr17g0341461 Lupinus albus
Lj2g0017874 Lotus japonicus
Lj3A1027T87 Lonicera japonica
Lj6A773T133 Lonicera japonica
Lsat_1_v5_gn_3_105000 Lactuca sativa
Lsat_1_v5_gn_8_37061 Lactuca sativa
Manes.06G079500 Manihot esculenta
Manes.14G090300 Manihot esculenta
MBI14_g31150_MAGBIO Magnolia biondii
MBI15_g05001_MAGBIO Magnolia biondii
MBI15_g31908_MAGBIO Magnolia biondii
MD06G1205800 Malus domestica
MD13G1056500 Malus domestica
MD14G1216700 Malus domestica
MD16G1055400 Malus domestica
Medtr5g047930 Medicago truncatula
MELO3C011401.2 Cucumis melo
MELO3C012167.2 Cucumis melo
Migut.E00253 Erythranthe guttata
Migut.L01161 Erythranthe guttata
MSTRG.13475 Avicennia marina
MSTRG.7727 Avicennia marina
MSTRG.780 Avicennia marina
MSTRG.781 Avicennia marina
Nitab4.5_0000027g0390 Nicotiana tabacum
Nitab4.5_0001071g0040 Nicotiana tabacum
Nitab4.5_0001196g0010 Nicotiana tabacum
Nitab4.5_0002491g0030 Nicotiana tabacum
Nitab4.5_0003339g0090 Nicotiana tabacum
Nitab4.5_0009153g0010 Nicotiana tabacum
Nn4g23540 Nelumbo nucifera
Oeu001651.1 Olea europaea
Oeu003749.3 Olea europaea
Oeu021806.1 Olea europaea
Oeu024157.1 Olea europaea
Oeu055083.2 Olea europaea
Oeu062245.1 Olea europaea
Os02g0582100 Oryza sativa ssp. japonica
Os04g0467100 Oryza sativa ssp. japonica
Peaxi162Scf00026g00314 Petunia axillaris
Peaxi162Scf00188g01025 Petunia axillaris
PGR102G2660 Punica granatum
PGR119G1479 Punica granatum
PGSC0003DMG400001936 Solanum tuberosum
PGSC0003DMG400025716 Solanum tuberosum
PGSC0003DMG400025718 Solanum tuberosum
Phvul.003G038300 Phaseolus vulgaris
Phvul.003G280500 Phaseolus vulgaris
Potri.008G111800 Populus trichocarpa
Potri.010G138100 Populus trichocarpa
Potri.015G048400 Populus trichocarpa
Prupe.1G293500 Prunus persica
Prupe.5G210100 Prunus persica
Psat2g085960 Pisum sativum
PSO017G6048 Papaver somniferum
PSO063G1603 Papaver somniferum
PSO478G4016 Papaver somniferum
PSO782G5508 Papaver somniferum
QL09p016426 Quercus lobata
RcHm_v2.0_Chr4g0437341 Rosa chinensis
RcHm_v2.0_Chr7g0183741 Rosa chinensis
Rhsim09G0122100 Rhododendron simsii
Rhsim12G0071300 Rhododendron simsii
Sabra08G0084400 Salix brachista
Sabra10G0106400 Salix brachista
Sabra15G0078800 Salix brachista
Sc04g0007330 Simmondsia chinensis
Sc11g0002650 Simmondsia chinensis
Sed0001557 Sechium edule
Sed0016639 Sechium edule
Sed0017206 Sechium edule
SEGI_14421 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07826 Striga asiatica
SGA_v2.0_scaffold287G47189 Striga asiatica
SGA_v2.0_scaffold59G20657 Striga asiatica
SMO228G0022 Selaginella moellendorffii
Solyc01g010140.1 Solanum lycopersicum
Solyc04g005290.3 Solanum lycopersicum
Solyc05g011830.4 Solanum lycopersicum
Sopen01g005700 Solanum pennellii
Sopen04g001270 Solanum pennellii
Sopen05g006590 Solanum pennellii
Sp2g14630 Schrenkiella parvula
TAR374G0527 Trochodendron aralioides
TAR622G0187 Trochodendron aralioides
THA.LOC104801838 Tarenaya hassleriana
THA.LOC104805213 Tarenaya hassleriana
THA.LOC104824052 Tarenaya hassleriana
Thecc.02G322700 Theobroma cacao
Thecc.03G108500 Theobroma cacao
Thhalv10004181m.g Eutrema salsugineum
Thhalv10008913m.g Eutrema salsugineum
TPR.G38556 Trifolium pratense
TWI31G1177 Tripterygium wilfordii
TWI79G0747 Tripterygium wilfordii
unitig_22.g5562 Utricularia gibba
unitig_52.g17161 Utricularia gibba
unitig_62.g23701 Utricularia gibba
unitig_699.g19905 Utricularia gibba
unitig_8.g3969 Utricularia gibba
vmacro01298 Vaccinium macrocarpon
vmacro10474 Vaccinium macrocarpon
VMungo0251G3127 Vigna mungo
VMungo1215G0401 Vigna mungo
Zm00001eb245390 Zea mays

User provided reference genes

Program Settings