Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p20460 Brassica napus
A06p16470 Brassica napus
A07p41710 Brassica napus
Aa31LG4G6260 Aethionema arabicum
Aa31LG7G4720 Aethionema arabicum
Actinidia29776 Actinidia chinensis
Ah.00g000510 Amaranthus hybridus
Ah.00g000520 Amaranthus hybridus
Ah.00g000540 Amaranthus hybridus
AL1G33310 Arabidopsis lyrata
AL1G45500 Arabidopsis lyrata
AL2G36190 Arabidopsis lyrata
Aqoxy6G01872 Aquilegia oxysepala
Aqoxy7G02435 Aquilegia oxysepala
Aqoxy7G03020 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7U9B70 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HRR6RE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JK7EPH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V0RRMI Arachis hypogaea
AT1G20380 Arabidopsis thaliana
AT1G76140 Arabidopsis thaliana
ATR0661G331 Amborella trichopoda
Atru.chr13.185 Acer truncatum
Atru.chr13.186 Acer truncatum
AUR62013840 Chenopodium quinoa
AUR62013841 Chenopodium quinoa
AUR62036765 Chenopodium quinoa
AUR62036766 Chenopodium quinoa
BcaB05g24970 Brassica carinata
BcaB07g32043 Brassica carinata
BcaC05g25950 Brassica carinata
BcaC08g47108 Brassica carinata
BcaC08g47287 Brassica carinata
BcaNung05118 Brassica carinata
BolC2t09361H Brassica oleracea
BolC5t29742H Brassica oleracea
BolC5t29745H Brassica oleracea
BolC5t30601H Brassica oleracea
BolC6t40048H Brassica oleracea
BraA02t07076Z Brassica rapa
BraA06t24750Z Brassica rapa
BraA07t31700Z Brassica rapa
C02p33380 Brassica napus
C05p10000 Brassica napus
C05p19000 Brassica napus
C06p50090 Brassica napus
CAN.G197.22 Capsicum annuum
CAN.G311.90 Capsicum annuum
CAN.G68.20 Capsicum annuum
CANSAT25G1753 Cannabis sativa
CARHR020850 Cardamine hirsuta
CARHR069690 Cardamine hirsuta
CARHR199460 Cardamine hirsuta
CARHR199470 Cardamine hirsuta
Carub.0001s1988 Capsella rubella
Carub.0002s2303 Capsella rubella
Ca_13489_v3 Cicer arietinum L.
Ca_15449_v3 Cicer arietinum L.
Cc10_g00950 Coffea canephora
CDE02G1954 Ceratophyllum demersum
CDE04G3477 Ceratophyllum demersum
CDE09G1089 Ceratophyllum demersum
Cfa014028 Carpinus fangiana
Ciclev10000298m.g Citrus clementina
Ciclev10019028m.g Citrus clementina
CiPaw.07G141900 Carya illinoinensis
CiPaw.08G070300 Carya illinoinensis
CiPaw.08G070600 Carya illinoinensis
ClCG05G015270 Citrullus lanatus
COL.COLO4_26055 Corchorus olitorius
COL.COLO4_26056 Corchorus olitorius
Cpa.g.sc26.240 Carica papaya
Cre12.g541800 Chlamydomonas reinhardtii
Cre12.g542100 Chlamydomonas reinhardtii
CsaV3_4G037050 Cucumis sativus L.
CSS0003885 Camellia sinensis var. sinensis
CSS0004181 Camellia sinensis var. sinensis
CSS0019230 Camellia sinensis var. sinensis
CSS0019436 Camellia sinensis var. sinensis
CSS0026231 Camellia sinensis var. sinensis
CSS0037504 Camellia sinensis var. sinensis
CSS0038947 Camellia sinensis var. sinensis
DCAR_009484 Daucus carota
DCAR_016928 Daucus carota
DCAR_020340 Daucus carota
DCAR_023169 Daucus carota
Dinv26536 Davidia involucrata
Dinv39568 Davidia involucrata
Duzib041G0129 Durio zibethinus
Duzib093G0519 Durio zibethinus
Duzib093G0892 Durio zibethinus
Duzib116G0010 Durio zibethinus
ECA232G4710 Erigeron canadensis
ECA233G0230 Erigeron canadensis
EL10Ac1g02031 Beta vulgaris
EL10Ac1g02034 Beta vulgaris
Eucgr.F03531 Eucalyptus grandis
FAN15G2096 Fragaria x ananassa
FAN20G1256 Fragaria x ananassa
FAN27G0357 Fragaria x ananassa
FvH4_2g37820 Fragaria vesca
Glyma.04G019700 Glycine max
Glyma.14G222700 Glycine max
Gohir.A01G108300 Gossypium hirsutum
Gohir.A01G108400 Gossypium hirsutum
Gohir.D01G094666 Gossypium hirsutum
Gohir.D01G094732 Gossypium hirsutum
Gohir.D01G094800 Gossypium hirsutum
Gorai.002G120100 Gossypium raimondii
Gorai.002G120200 Gossypium raimondii
GSVIVG01008711001 Vitis vinifera
HanXRQChr05g0146341 Helianthus annuus
HanXRQChr12g0366621 Helianthus annuus
Haze_22734 Corylus avellana
Haze_26857 Corylus avellana
Hma1.2p1_0023F.1_g015840 Hydrangea macrophylla
HPP92_022165 Vanilla planifolia
Hund01733 Selenicereus undatus
Hund05137 Selenicereus undatus
Lalb_Chr01g0008451 Lupinus albus
Lalb_Chr23g0265881 Lupinus albus
Lj1g0000170 Lotus japonicus
Lj5g0021247 Lotus japonicus
Lsat_1_v5_gn_1_6780 Lactuca sativa
Lsat_1_v5_gn_8_28160 Lactuca sativa
Lsat_1_v5_gn_9_46621 Lactuca sativa
Manes.05G141200 Manihot esculenta
Manes.18G007901 Manihot esculenta
Mapoly0068s0007 Marchantia polymorpha
MBI05_g34595_MAGBIO Magnolia biondii
MBI05_g35098_MAGBIO Magnolia biondii
MBI08_g05396_MAGBIO Magnolia biondii
MBI09_g47007_MAGBIO Magnolia biondii
MCO03G379 Micromonas commoda
MD08G1005500 Malus domestica
MD15G1004900 Malus domestica
Medtr1g026370 Medicago truncatula
Medtr1g026380 Medicago truncatula
Medtr3g115030 Medicago truncatula
MELO3C017003.2 Cucumis melo
Migut.C00913 Erythranthe guttata
Migut.N03191 Erythranthe guttata
MSTRG.25286 Avicennia marina
MSTRG.25288 Avicennia marina
Nitab4.5_0000337g0180 Nicotiana tabacum
Nitab4.5_0000588g0340 Nicotiana tabacum
Nitab4.5_0010230g0010 Nicotiana tabacum
Nn5g30886 Nelumbo nucifera
Nn6g31847 Nelumbo nucifera
Oeu026115.1 Olea europaea
Oeu026506.1 Olea europaea
Os01g0108200 Oryza sativa ssp. japonica
Os04g0561500 Oryza sativa ssp. japonica
Peaxi162Scf00174g00141 Petunia axillaris
Peaxi162Scf00400g00047 Petunia axillaris
PGR031G2061 Punica granatum
PGSC0003DMG400009892 Solanum tuberosum
PGSC0003DMG400028869 Solanum tuberosum
Phvul.001G001700 Phaseolus vulgaris
Phvul.009G020800 Phaseolus vulgaris
Potri.002G013900 Populus trichocarpa
Potri.002G014000 Populus trichocarpa
Potri.005G247300 Populus trichocarpa
Potri.005G247400 Populus trichocarpa
Pp3c11_10100 Physcomitrium patens
Pp3c18_15390 Physcomitrium patens
Pp3c1_23380 Physcomitrium patens
Pp3c1_430 Physcomitrium patens
Pp3c21_9220 Physcomitrium patens
Pp3c22_7020 Physcomitrium patens
Pp3c2_14350 Physcomitrium patens
PRCOL_00005464 Prasinoderma coloniale
Prupe.1G357500 Prunus persica
Prupe.1G357700 Prunus persica
Psat0s4771g0040 Pisum sativum
Psat5g011040 Pisum sativum
PSO541G0737 Papaver somniferum
PSO675G1935 Papaver somniferum
PSO832G3244 Papaver somniferum
QL02p013494 Quercus lobata
QL02p013501 Quercus lobata
RcHm_v2.0_Chr6g0303891 Rosa chinensis
Rhsim07G0252600 Rhododendron simsii
Sabra02G0010900 Salix brachista
Sabra02G0011000 Salix brachista
Sabra05G0191300 Salix brachista
SalBow6G3393 Salvia bowleyana
SalBow7G1789 Salvia bowleyana
Sc02g0008950 Simmondsia chinensis
Sc26g0004550 Simmondsia chinensis
Sed0023129 Sechium edule
SEGI_02216 Sequoiadendron giganteum
SEGI_13393 Sequoiadendron giganteum
SEGI_22141 Sequoiadendron giganteum
SEGI_23429 Sequoiadendron giganteum
SEGI_25930 Sequoiadendron giganteum
SEGI_26860 Sequoiadendron giganteum
SEGI_32102 Sequoiadendron giganteum
SEGI_38955 Sequoiadendron giganteum
SEGI_39019 Sequoiadendron giganteum
SGA_v2.0_scaffold25G11197 Striga asiatica
SGA_v2.0_scaffold351G49655 Striga asiatica
SHI08026 Sapria himalayana
SMO364G0237 Selaginella moellendorffii
Solyc04g082120.3 Solanum lycopersicum
Solyc08g022070.3 Solanum lycopersicum
Solyc09g066405.1 Solanum lycopersicum
Sopen04g035750 Solanum pennellii
Sopen08g014930 Solanum pennellii
Sp1g18120 Schrenkiella parvula
Sp5g31270 Schrenkiella parvula
TAR625G0913 Trochodendron aralioides
TAR628G0109 Trochodendron aralioides
THA.LOC104811449 Tarenaya hassleriana
THA.LOC104813766 Tarenaya hassleriana
Thecc.08G054400 Theobroma cacao
Thecc.08G054500 Theobroma cacao
Thhalv10006924m.g Eutrema salsugineum
Thhalv10018135m.g Eutrema salsugineum
TPR.G26375 Trifolium pratense
TPR.G38219 Trifolium pratense
TWI56G0461 Tripterygium wilfordii
unitig_747.g21524 Utricularia gibba
vmacro04387 Vaccinium macrocarpon
VMungo0647G2052 Vigna mungo
VMungo1309G1802 Vigna mungo
Zm00001eb074080 Zea mays
Zm00001eb409530 Zea mays

User provided reference genes

Program Settings