Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p07820 Brassica napus
A09p26330 Brassica napus
Aa31LG9G3060 Aethionema arabicum
Aa31LG9G9810 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1595 Anthoceros agrestis
Actinidia11358 Actinidia chinensis
Actinidia11359 Actinidia chinensis
Actinidia12344 Actinidia chinensis
Actinidia13109 Actinidia chinensis
AL6G47940 Arabidopsis lyrata
AL7G41960 Arabidopsis lyrata
Aqoxy1G03111 Aquilegia oxysepala
Aqoxy5G00181 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0QBZ7D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8ZEA2R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.98KHJ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JD61T2 Arachis hypogaea
AT4G04470 Arabidopsis thaliana
AT4G14305 Arabidopsis thaliana
ATR0736G222 Amborella trichopoda
ATR0794G113 Amborella trichopoda
Atru.chr10.2256 Acer truncatum
Atru.chr4.2000 Acer truncatum
Atru.chr4.2001 Acer truncatum
AUR62002168 Chenopodium quinoa
AUR62012730 Chenopodium quinoa
AUR62015541 Chenopodium quinoa
AUR62021924 Chenopodium quinoa
BcaB01g01806 Brassica carinata
BcaB02g08620 Brassica carinata
BcaC02g09334 Brassica carinata
BcaC04g21291 Brassica carinata
BolC4t25726H Brassica oleracea
BolC9t56185H Brassica oleracea
BraA04t16470Z Brassica rapa
BraA09t38206Z Brassica rapa
C04p41450 Brassica napus
C09p33490 Brassica napus
CAN.G1014.13 Capsicum annuum
CAN.G1234.3 Capsicum annuum
CAN.G404.69 Capsicum annuum
CANSAT56G0660 Cannabis sativa
CANSAT56G2933 Cannabis sativa
CANSAT78G1642 Cannabis sativa
CARHR220490 Cardamine hirsuta
CARHR253040 Cardamine hirsuta
Carub.0006s3226 Capsella rubella
Carub.0007s2799 Capsella rubella
Ca_00675_v3 Cicer arietinum L.
CBR_g23796 Chara braunii
Cc09_g01480 Coffea canephora
CDE02G3041 Ceratophyllum demersum
Cfa000190 Carpinus fangiana
Cfa014749 Carpinus fangiana
Ciclev10006005m.g Citrus clementina
Ciclev10007209m.g Citrus clementina
Ciclev10016857m.g Citrus clementina
CiPaw.01G181100 Carya illinoinensis
CiPaw.02G108900 Carya illinoinensis
CiPaw.09G094900 Carya illinoinensis
ClCG01G021820 Citrullus lanatus
ClCG06G007120 Citrullus lanatus
COL.COLO4_15924 Corchorus olitorius
COL.COLO4_31800 Corchorus olitorius
Cpa.g.c48142 Carica papaya
Cpa.g.sc152.31 Carica papaya
Cpa.g.sc44.41 Carica papaya
Cre12.g550600 Chlamydomonas reinhardtii
CsaV3_2G012630 Cucumis sativus L.
CsaV3_6G048870 Cucumis sativus L.
CSS0007485 Camellia sinensis var. sinensis
CSS0021270 Camellia sinensis var. sinensis
DCAR_024928 Daucus carota
DCAR_028191 Daucus carota
Dinv13915 Davidia involucrata
Dinv29832 Davidia involucrata
Duzib151G0688 Durio zibethinus
Duzib192G0807 Durio zibethinus
Duzib235G1143 Durio zibethinus
ECA248G0713 Erigeron canadensis
EL10Ac3g04975 Beta vulgaris
EL10Ac8g20086 Beta vulgaris
Eucgr.D01349 Eucalyptus grandis
Eucgr.H03015 Eucalyptus grandis
FAN12G1441 Fragaria x ananassa
FAN21G0805 Fragaria x ananassa
FAN22G1503 Fragaria x ananassa
FAN24G0507 Fragaria x ananassa
FAN25G1159 Fragaria x ananassa
FvH4_2g13780 Fragaria vesca
FvH4_3g01800 Fragaria vesca
FvH4_4g04080 Fragaria vesca
Glyma.03G065400 Glycine max
Glyma.09G005100 Glycine max
Glyma.09G005200 Glycine max
Glyma.10G183500 Glycine max
Glyma.15G109800 Glycine max
Glyma.20G015800 Glycine max
Glyma.20G206800 Glycine max
Gohir.A05G171800 Gossypium hirsutum
Gohir.A09G228500 Gossypium hirsutum
Gohir.D05G174900 Gossypium hirsutum
Gohir.D09G229600 Gossypium hirsutum
Gorai.006G252300 Gossypium raimondii
Gorai.009G180200 Gossypium raimondii
GSVIVG01010431001 Vitis vinifera
GSVIVG01011542001 Vitis vinifera
GSVIVG01012695001 Vitis vinifera
GSVIVG01027860001 Vitis vinifera
HanXRQChr01g0004141 Helianthus annuus
HanXRQChr17g0538861 Helianthus annuus
HanXRQChr17g0552611 Helianthus annuus
Haze_06824 Corylus avellana
Haze_11424 Corylus avellana
Hma1.2p1_0112F.1_g054410 Hydrangea macrophylla
Hma1.2p1_0298F.1_g117700 Hydrangea macrophylla
HPP92_005247 Vanilla planifolia
HPP92_028135 Vanilla planifolia
Hund03059 Selenicereus undatus
Hund11912 Selenicereus undatus
Hund23450 Selenicereus undatus
Lalb_Chr18g0056511 Lupinus albus
Lalb_Chr21g0312191 Lupinus albus
Lj1A1232G88 Lonicera japonica
Lj5g0003004 Lotus japonicus
Lj6A627T16 Lonicera japonica
Lj6g0022460 Lotus japonicus
Lsat_1_v5_gn_1_129780 Lactuca sativa
Manes.15G043600 Manihot esculenta
Manes.17G025700 Manihot esculenta
Mapoly0046s0007 Marchantia polymorpha
MBI07_g31315_MAGBIO Magnolia biondii
MBI10_g18937_MAGBIO Magnolia biondii
MBI18_g23121_MAGBIO Magnolia biondii
MD05G1349300 Malus domestica
MD10G1323900 Malus domestica
MD13G1217400 Malus domestica
Medtr1g075540 Medicago truncatula
Medtr2g023850 Medicago truncatula
MELO3C007405.2 Cucumis melo
MELO3C023014.2 Cucumis melo
Migut.H01577 Erythranthe guttata
Migut.M01337 Erythranthe guttata
MSTRG.14636 Avicennia marina
Nitab4.5_0000900g0040 Nicotiana tabacum
Nitab4.5_0002333g0100 Nicotiana tabacum
Nitab4.5_0002695g0110 Nicotiana tabacum
Nitab4.5_0004700g0010 Nicotiana tabacum
Nitab4.5_0007963g0070 Nicotiana tabacum
Nitab4.5_0009577g0020 Nicotiana tabacum
Nn1g02850 Nelumbo nucifera
Nn1g07196 Nelumbo nucifera
Nn3g19726 Nelumbo nucifera
Oeu040338.1 Olea europaea
Oeu055244.1 Olea europaea
Os02g0226000 Oryza sativa ssp. japonica
Os08g0566900 Oryza sativa ssp. japonica
Peaxi162Scf00131g01118 Petunia axillaris
Peaxi162Scf00306g00087 Petunia axillaris
Peaxi162Scf00579g00318 Petunia axillaris
PGR004G0773 Punica granatum
PGR004G1699 Punica granatum
PGSC0003DMG400016295 Solanum tuberosum
PGSC0003DMG400016472 Solanum tuberosum
PGSC0003DMG401005074 Solanum tuberosum
Phvul.006G148300 Phaseolus vulgaris
Phvul.010G072949 Phaseolus vulgaris
Potri.004G008700 Populus trichocarpa
Potri.004G009201 Populus trichocarpa
Potri.010G068900 Populus trichocarpa
Potri.011G007100 Populus trichocarpa
Pp3c12_11600 Physcomitrium patens
Pp3c4_8190 Physcomitrium patens
Pp3c4_8250 Physcomitrium patens
Prupe.1G044000 Prunus persica
Prupe.4G018300 Prunus persica
Prupe.4G049900 Prunus persica
Psat1g179240 Pisum sativum
Psat6g124200 Pisum sativum
Psat6g124240 Pisum sativum
PSO675G9249 Papaver somniferum
PSO832G3829 Papaver somniferum
QL05p000280 Quercus lobata
QL05p072583 Quercus lobata
QL05p072617 Quercus lobata
QL06p019899 Quercus lobata
RcHm_v2.0_Chr4g0394471 Rosa chinensis
RcHm_v2.0_Chr5g0002631 Rosa chinensis
Rhsim02G0041900 Rhododendron simsii
Rhsim02G0105800 Rhododendron simsii
Sabra08G0129400 Salix brachista
Sabra11G0006200 Salix brachista
Sabra11G0009800 Salix brachista
SalBow8G2361 Salvia bowleyana
Sc24g0000230 Simmondsia chinensis
Sed0013412 Sechium edule
Sed0015621 Sechium edule
Sed0019923 Sechium edule
SEGI_39887 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01905 Striga asiatica
SGA_v2.0_scaffold7G03811 Striga asiatica
SMO367G1300 Selaginella moellendorffii
Solyc02g080820.3 Solanum lycopersicum
Solyc03g031600.3 Solanum lycopersicum
Solyc06g053550.3 Solanum lycopersicum
Sopen02g025510 Solanum pennellii
Sopen06g018640 Solanum pennellii
Sp6g04430 Schrenkiella parvula
TAR362G1161 Trochodendron aralioides
TAR624G0707 Trochodendron aralioides
TAR626G1541 Trochodendron aralioides
TAR633G2733 Trochodendron aralioides
THA.LOC104813372 Tarenaya hassleriana
THA.LOC104822235 Tarenaya hassleriana
Thecc.04G259600 Theobroma cacao
Thecc.06G224100 Theobroma cacao
Thhalv10026334m.g Eutrema salsugineum
Thhalv10028993m.g Eutrema salsugineum
TPR.G21895 Trifolium pratense
TWI09G0025 Tripterygium wilfordii
TWI38G0567 Tripterygium wilfordii
TWI38G1501 Tripterygium wilfordii
TWI53G1337 Tripterygium wilfordii
vmacro15460 Vaccinium macrocarpon
vmacro15797 Vaccinium macrocarpon
VMungo0540G2013 Vigna mungo
VMungo0720G1524 Vigna mungo
Zm00001eb175590 Zea mays
Zm00001eb239740 Zea mays

User provided reference genes

Program Settings