Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02380 Brassica napus
A05p03250 Brassica napus
A05p03320 Brassica napus
A07p24330 Brassica napus
A09p51290 Brassica napus
A09p51300 Brassica napus
A09p51310 Brassica napus
Aa31LG1G24550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.567 Anthoceros agrestis
Actinidia11186 Actinidia chinensis
Actinidia12819 Actinidia chinensis
Actinidia35423 Actinidia chinensis
Ah.01g004780 Amaranthus hybridus
AL4G41400 Arabidopsis lyrata
AL5G40510 Arabidopsis lyrata
AL5G40520 Arabidopsis lyrata
Aqoxy1G01921 Aquilegia oxysepala
Aqoxy4G00197 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6YST69 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7JY60E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7SJ9JV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H9U4YS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HZ88QK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PCJG5Z Arachis hypogaea
AT2G42790 Arabidopsis thaliana
AT3G58740 Arabidopsis thaliana
AT3G58750 Arabidopsis thaliana
ATR0213G001 Amborella trichopoda
Atru.chr6.3557 Acer truncatum
AUR62024005 Chenopodium quinoa
AUR62036394 Chenopodium quinoa
BcaB02g07501 Brassica carinata
BcaC02g10027 Brassica carinata
BcaC07g40223 Brassica carinata
BcaC07g40224 Brassica carinata
BcaC07g40293 Brassica carinata
BolC4t22025H Brassica oleracea
BolC4t24943H Brassica oleracea
BolC6t37735H Brassica oleracea
BolC8t51005H Brassica oleracea
BolC8t51006H Brassica oleracea
BolC8t51008H Brassica oleracea
BraA04t15967Z Brassica rapa
BraA05t19314Z Brassica rapa
BraA07t30079Z Brassica rapa
BraA09t40570Z Brassica rapa
BraA09t40571Z Brassica rapa
BraA09t40572Z Brassica rapa
BraA09t41560Z Brassica rapa
C04p03890 Brassica napus
C04p33750 Brassica napus
C06p25730 Brassica napus
C08p34070 Brassica napus
C08p34080 Brassica napus
C08p34090 Brassica napus
CAN.G1481.11 Capsicum annuum
CAN.G1481.12 Capsicum annuum
CAN.G486.12 Capsicum annuum
CAN.G486.13 Capsicum annuum
CARHR137870 Cardamine hirsuta
CARHR169120 Cardamine hirsuta
CARHR169130 Cardamine hirsuta
CARHR169140 Cardamine hirsuta
Carub.0004s2523 Capsella rubella
Carub.0005s2553 Capsella rubella
Carub.0005s2554 Capsella rubella
Ca_06295_v3 Cicer arietinum L.
Ca_14627_v3 Cicer arietinum L.
Ca_30924_v3 Cicer arietinum L.
Ca_31297_v3 Cicer arietinum L.
CBR_g4482 Chara braunii
Cc05_g09160 Coffea canephora
CDE10G0579 Ceratophyllum demersum
CDE10G1091 Ceratophyllum demersum
Cfa021389 Carpinus fangiana
Ciclev10014944m.g Citrus clementina
CiPaw.03G195600 Carya illinoinensis
CiPaw.04G135400 Carya illinoinensis
ClCG02G018250 Citrullus lanatus
COL.COLO4_30244 Corchorus olitorius
COL.COLO4_33706 Corchorus olitorius
Cpa.g.sc50.64 Carica papaya
Cre03.g149100 Chlamydomonas reinhardtii
Cre07.g327350 Chlamydomonas reinhardtii
CsaV3_6G015630 Cucumis sativus L.
CSS0027416 Camellia sinensis var. sinensis
CSS0034735 Camellia sinensis var. sinensis
DCAR_009786 Daucus carota
DCAR_009788 Daucus carota
DCAR_009790 Daucus carota
DCAR_012665 Daucus carota
Dinv12715 Davidia involucrata
Dinv26515 Davidia involucrata
Duzib147G1628 Durio zibethinus
ECA233G2966 Erigeron canadensis
EL10Ac9g21023 Beta vulgaris
Eucgr.A01955 Eucalyptus grandis
FAN05G0272 Fragaria x ananassa
FAN09G0397 Fragaria x ananassa
FvH4_6g37750 Fragaria vesca
Glyma.02G288500 Glycine max
Glyma.08G311200 Glycine max
Glyma.14G026400 Glycine max
Glyma.18G104400 Glycine max
Gohir.A05G172050 Gossypium hirsutum
Gohir.A05G278733 Gossypium hirsutum
Gohir.A06G095902 Gossypium hirsutum
Gohir.A07G037766 Gossypium hirsutum
Gohir.A10G071666 Gossypium hirsutum
Gohir.A11G059700 Gossypium hirsutum
Gohir.A13G067766 Gossypium hirsutum
Gohir.D01G097233 Gossypium hirsutum
Gohir.D10G172551 Gossypium hirsutum
Gohir.D11G063800 Gossypium hirsutum
Gohir.D13G151952 Gossypium hirsutum
Gorai.001G142600 Gossypium raimondii
Gorai.006G047100 Gossypium raimondii
Gorai.007G069000 Gossypium raimondii
GSVIVG01000817001 Vitis vinifera
GSVIVG01037029001 Vitis vinifera
HanXRQChr12g0367491 Helianthus annuus
HanXRQChr13g0386841 Helianthus annuus
Haze_13470 Corylus avellana
Haze_26743 Corylus avellana
Hma1.2p1_0178F.1_g078210 Hydrangea macrophylla
HPP92_006375 Vanilla planifolia
Hund00825 Selenicereus undatus
Lalb_Chr04g0248661 Lupinus albus
Lalb_Chr10g0106821 Lupinus albus
Lj1A586T32 Lonicera japonica
Lj6g0001020 Lotus japonicus
LjContig00310g0022930 Lotus japonicus
Lsat_1_v5_gn_8_31881 Lactuca sativa
Manes.01G129000 Manihot esculenta
Manes.02G086900 Manihot esculenta
Mapoly0091s0007 Marchantia polymorpha
Mapoly0111s0039 Marchantia polymorpha
MBI06_g08524_MAGBIO Magnolia biondii
MBI07_g00476_MAGBIO Magnolia biondii
MBI16_g03133_MAGBIO Magnolia biondii
MCO02G216 Micromonas commoda
MCO05G529 Micromonas commoda
MD09G1156400 Malus domestica
MD17G1142900 Malus domestica
Medtr3g048920 Medicago truncatula
Medtr5g091930 Medicago truncatula
MELO3C019711.2 Cucumis melo
Migut.M00216 Erythranthe guttata
MSTRG.14300 Avicennia marina
MSTRG.6769 Avicennia marina
Nitab4.5_0005521g0030 Nicotiana tabacum
Nitab4.5_0010286g0010 Nicotiana tabacum
Nn3g21011 Nelumbo nucifera
Oeu006149.1 Olea europaea
Oeu020938.2 Olea europaea
Oeu026478.3 Olea europaea
Os02g0232400 Oryza sativa ssp. japonica
Peaxi162Scf00154g00814 Petunia axillaris
Peaxi162Scf00807g00038 Petunia axillaris
PGR042G3476 Punica granatum
PGSC0003DMG400007797 Solanum tuberosum
PGSC0003DMG400017338 Solanum tuberosum
Phvul.006G035500 Phaseolus vulgaris
Potri.014G141900 Populus trichocarpa
Potri.016G089300 Populus trichocarpa
Pp3c12_7740 Physcomitrium patens
Pp3c20_18190 Physcomitrium patens
Pp3c23_9030 Physcomitrium patens
PRCOL_00002388 Prasinoderma coloniale
PRCOL_00003102 Prasinoderma coloniale
PRCOL_00005692 Prasinoderma coloniale
Prupe.3G169400 Prunus persica
Psat0s4248g0040 Pisum sativum
PSO170G1739 Papaver somniferum
PSO528G0280 Papaver somniferum
QL07p013989 Quercus lobata
QL08p043421 Quercus lobata
RcHm_v2.0_Chr2g0133621 Rosa chinensis
RcHm_v2.0_Chr2g0137361 Rosa chinensis
RcHm_v2.0_Chr2g0143111 Rosa chinensis
RcHm_v2.0_Chr2g0150811 Rosa chinensis
RcHm_v2.0_Chr4g0410741 Rosa chinensis
RcHm_v2.0_Chr7g0233461 Rosa chinensis
Rhsim06G0122300 Rhododendron simsii
Sabra14G0107100 Salix brachista
Sabra16G0095100 Salix brachista
Sabra16G0095300 Salix brachista
SalBow7G3009 Salvia bowleyana
SalBow7G3774 Salvia bowleyana
SalBow7G4649 Salvia bowleyana
SalBow7G4855 Salvia bowleyana
Sc12g0003790 Simmondsia chinensis
Sed0011166 Sechium edule
Sed0013377 Sechium edule
SGA_v2.0_scaffold538G52785 Striga asiatica
SGA_v2.0_scaffold9G04895 Striga asiatica
SMO115G0146 Selaginella moellendorffii
SMO115G0153 Selaginella moellendorffii
SMO118G0533 Selaginella moellendorffii
SMO367G0491 Selaginella moellendorffii
Solyc07g055840.3 Solanum lycopersicum
Solyc12g011000.2 Solanum lycopersicum
Sopen07g029210 Solanum pennellii
Sopen12g006360 Solanum pennellii
Sp4g24910 Schrenkiella parvula
Sp5g04090 Schrenkiella parvula
Sp5g04100 Schrenkiella parvula
Sp5g04110 Schrenkiella parvula
TAR626G0830 Trochodendron aralioides
TAR627G0638 Trochodendron aralioides
TAR629G1040 Trochodendron aralioides
THA.LOC104802267 Tarenaya hassleriana
THA.LOC104803095 Tarenaya hassleriana
THA.LOC104803170 Tarenaya hassleriana
Thecc.01G158700 Theobroma cacao
Thhalv10005906m.g Eutrema salsugineum
Thhalv10006483m.g Eutrema salsugineum
Thhalv10016536m.g Eutrema salsugineum
TPR.G12698 Trifolium pratense
TPR.G13562 Trifolium pratense
TPR.G20717 Trifolium pratense
TWI14G0060 Tripterygium wilfordii
unitig_746.g26658 Utricularia gibba
vmacro12432 Vaccinium macrocarpon
vmacro12433 Vaccinium macrocarpon
VMungo0540G1035 Vigna mungo
VMungo0647G1404 Vigna mungo
Zm00001eb239300 Zea mays

User provided reference genes

Program Settings