Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p43820 Brassica napus
A06p32150 Brassica napus
Aa31LG1G16660 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.804 Anthoceros agrestis
Actinidia04409 Actinidia chinensis
Actinidia28043 Actinidia chinensis
Actinidia30837 Actinidia chinensis
Ah.02g126200 Amaranthus hybridus
AL8G42860 Arabidopsis lyrata
Aqoxy5G03029 Aquilegia oxysepala
Aqoxy6G00717 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7RAE92 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.90QG24 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9XWX38 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B0TM90 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FN9T2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IZH4BU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P5X8WX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U0JFG5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZFLJ4E Arachis hypogaea
AT5G65290 Arabidopsis thaliana
ATR0684G114 Amborella trichopoda
ATR0684G162 Amborella trichopoda
Atru.chr3.1345 Acer truncatum
AUR62003263 Chenopodium quinoa
AUR62027205 Chenopodium quinoa
BcaB02g09889 Brassica carinata
BcaC03g18323 Brassica carinata
BolC2t12465H Brassica oleracea
BolC3t18338H Brassica oleracea
BraA02t09307Z Brassica rapa
BraA06t26143Z Brassica rapa
C02p63980 Brassica napus
C03p60790 Brassica napus
CAN.G523.42 Capsicum annuum
CAN.G712.16 Capsicum annuum
CANSAT01G1533 Cannabis sativa
CARHR279240 Cardamine hirsuta
CARHR279250 Cardamine hirsuta
Carub.0008s2617 Capsella rubella
Ca_08989_v3 Cicer arietinum L.
Ca_16510_v3 Cicer arietinum L.
Ca_18366_v3 Cicer arietinum L.
CBR_g24418 Chara braunii
Cc02_g21190 Coffea canephora
Cc02_g21200 Coffea canephora
Cc02_g21210 Coffea canephora
Cc07_g14610 Coffea canephora
CDE10G0600 Ceratophyllum demersum
CDE10G0920 Ceratophyllum demersum
Cfa002601 Carpinus fangiana
Cfa005653 Carpinus fangiana
Cfa005658 Carpinus fangiana
Cfa008444 Carpinus fangiana
Cfa025803 Carpinus fangiana
Ciclev10024998m.g Citrus clementina
CiPaw.03G145700 Carya illinoinensis
CiPaw.05G032800 Carya illinoinensis
ClCG01G018590 Citrullus lanatus
COL.COLO4_27294 Corchorus olitorius
COL.COLO4_32310 Corchorus olitorius
COL.COLO4_32311 Corchorus olitorius
Cpa.g.sc55.75 Carica papaya
Cre10.g453100 Chlamydomonas reinhardtii
CsaV3_6G045250 Cucumis sativus L.
CSS0000411 Camellia sinensis var. sinensis
CSS0001731 Camellia sinensis var. sinensis
CSS0013093 Camellia sinensis var. sinensis
CSS0018204 Camellia sinensis var. sinensis
CSS0029645 Camellia sinensis var. sinensis
CSS0037292 Camellia sinensis var. sinensis
CSS0047331 Camellia sinensis var. sinensis
DCAR_001772 Daucus carota
DCAR_003462 Daucus carota
DCAR_003467 Daucus carota
DCAR_014204 Daucus carota
Dinv09007 Davidia involucrata
Dinv13233 Davidia involucrata
Duzib052G0813 Durio zibethinus
Duzib147G0326 Durio zibethinus
Duzib187G0783 Durio zibethinus
ECA236G2627 Erigeron canadensis
ECA246G2784 Erigeron canadensis
EL10As13g24055 Beta vulgaris
Eucgr.I00540 Eucalyptus grandis
FAN19G2704 Fragaria x ananassa
FAN23G1555 Fragaria x ananassa
FAN26G0078 Fragaria x ananassa
FAN28G1326 Fragaria x ananassa
FvH4_1g20250 Fragaria vesca
Glyma.05G175851 Glycine max
Glyma.08G070500 Glycine max
Glyma.08G133200 Glycine max
Glyma.11G242000 Glycine max
Glyma.12G156000 Glycine max
Glyma.18G015100 Glycine max
Gohir.A03G175300 Gossypium hirsutum
Gohir.A11G204500 Gossypium hirsutum
Gohir.A12G015900 Gossypium hirsutum
Gohir.D02G198900 Gossypium hirsutum
Gohir.D11G218900 Gossypium hirsutum
Gohir.D12G016200 Gossypium hirsutum
Gohir.D12G082300 Gossypium hirsutum
Gorai.005G222800 Gossypium raimondii
Gorai.007G235000 Gossypium raimondii
Gorai.008G016400 Gossypium raimondii
Gorai.008G090800 Gossypium raimondii
GSVIVG01003426001 Vitis vinifera
GSVIVG01003429001 Vitis vinifera
HanXRQChr12g0380961 Helianthus annuus
HanXRQChr13g0420801 Helianthus annuus
Haze_10579 Corylus avellana
Haze_24852 Corylus avellana
Hma1.2p1_0019F.1_g013790 Hydrangea macrophylla
Hma1.2p1_0784F.1_g217160 Hydrangea macrophylla
Hma1.2p1_0784F.1_g217165 Hydrangea macrophylla
HPP92_011190 Vanilla planifolia
HPP92_011196 Vanilla planifolia
Hund14102 Selenicereus undatus
Hund16554 Selenicereus undatus
Hund16555 Selenicereus undatus
Lalb_Chr05g0217601 Lupinus albus
Lalb_Chr07g0185321 Lupinus albus
Lalb_Chr11g0075461 Lupinus albus
Lj2A540G45 Lonicera japonica
Lj4g0023349 Lotus japonicus
Lj4g0024063 Lotus japonicus
Lj5A234T86 Lonicera japonica
Lj6g0000592 Lotus japonicus
Lsat_1_v5_gn_5_44481 Lactuca sativa
Lsat_1_v5_gn_5_45321 Lactuca sativa
Lsat_1_v5_gn_7_82321 Lactuca sativa
Lsat_1_v5_gn_9_116840 Lactuca sativa
Manes.12G130000 Manihot esculenta
Manes.13G096600 Manihot esculenta
Mapoly0140s0040 Marchantia polymorpha
MBI02_g33225_MAGBIO Magnolia biondii
MBI06_g22321_MAGBIO Magnolia biondii
MCO16G560 Micromonas commoda
MD01G1035600 Malus domestica
MD15G1320200 Malus domestica
Medtr3g086840 Medicago truncatula
Medtr4g094110 Medicago truncatula
Medtr8g089925 Medicago truncatula
MELO3C007738.2 Cucumis melo
Migut.L00160 Erythranthe guttata
MSTRG.15725 Avicennia marina
MSTRG.3756 Avicennia marina
Nitab4.5_0000128g0230 Nicotiana tabacum
Nitab4.5_0000863g0110 Nicotiana tabacum
Nitab4.5_0003959g0040 Nicotiana tabacum
Nitab4.5_0012818g0020 Nicotiana tabacum
Nn1g05454 Nelumbo nucifera
Nn5g30003 Nelumbo nucifera
Oeu012395.2 Olea europaea
Oeu019238.1 Olea europaea
Oeu032367.1 Olea europaea
Oeu032368.1 Olea europaea
Os02g0758100 Oryza sativa ssp. japonica
Os06g0218900 Oryza sativa ssp. japonica
Peaxi162Scf00044g01218 Petunia axillaris
Peaxi162Scf01060g00143 Petunia axillaris
PGR004G1126 Punica granatum
PGSC0003DMG400012573 Solanum tuberosum
PGSC0003DMG400016802 Solanum tuberosum
Phvul.002G210800 Phaseolus vulgaris
Phvul.002G260900 Phaseolus vulgaris
Potri.005G072100 Populus trichocarpa
Potri.007G096900 Populus trichocarpa
Pp3c11_13000 Physcomitrium patens
Pp3c1_14780 Physcomitrium patens
PRCOL_00001902 Prasinoderma coloniale
PRCOL_00003268 Prasinoderma coloniale
Prupe.6G193100 Prunus persica
Psat5g090840 Pisum sativum
Psat7g056400 Pisum sativum
Psat7g100360 Pisum sativum
PSO210G4835 Papaver somniferum
QL06p048139 Quercus lobata
QL11p022902 Quercus lobata
RcHm_v2.0_Chr2g0112391 Rosa chinensis
Rhsim01G0126400 Rhododendron simsii
Rhsim01G0127500 Rhododendron simsii
Rhsim05G0104000 Rhododendron simsii
Rhsim08G0013400 Rhododendron simsii
Sabra05G0059000 Salix brachista
Sabra07G0080200 Salix brachista
SalBow5G0007 Salvia bowleyana
SalBow5G0708 Salvia bowleyana
SalBow5G4959 Salvia bowleyana
Sc03g0000160 Simmondsia chinensis
Sed0022187 Sechium edule
Sed0027008 Sechium edule
SEGI_02381 Sequoiadendron giganteum
SEGI_02839 Sequoiadendron giganteum
SEGI_30052 Sequoiadendron giganteum
SGA_v2.0_scaffold335G49098 Striga asiatica
SHI21929 Sapria himalayana
SHI21930 Sapria himalayana
SHI21931 Sapria himalayana
SHI21932 Sapria himalayana
SHI21933 Sapria himalayana
SMO144G0094 Selaginella moellendorffii
Solyc01g105510.3 Solanum lycopersicum
Solyc05g051490.3 Solanum lycopersicum
Sopen01g047980 Solanum pennellii
Sopen05g029900 Solanum pennellii
Sp2g28400 Schrenkiella parvula
TAR625G1497 Trochodendron aralioides
TAR628G0470 Trochodendron aralioides
THA.LOC104798827 Tarenaya hassleriana
THA.LOC104807168 Tarenaya hassleriana
Thecc.01G095700 Theobroma cacao
Thecc.02G134100 Theobroma cacao
Thhalv10003703m.g Eutrema salsugineum
TPR.G16016 Trifolium pratense
TPR.G2848 Trifolium pratense
TPR.G6243 Trifolium pratense
TWI53G0751 Tripterygium wilfordii
TWI74G1411 Tripterygium wilfordii
unitig_61.g26059 Utricularia gibba
unitig_748.g8484 Utricularia gibba
vmacro18579 Vaccinium macrocarpon
vmacro19944 Vaccinium macrocarpon
VMungo0251G0124 Vigna mungo
VMungo0251G0868 Vigna mungo
VMungo0251G3475 Vigna mungo
Zm00001eb193930 Zea mays
Zm00001eb255460 Zea mays
Zm00001eb279320 Zea mays

User provided reference genes

Program Settings