Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p30680 Brassica napus
A09p02340 Brassica napus
Aa31LG5G2570 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis
Actinidia00064 Actinidia chinensis
Actinidia00717 Actinidia chinensis
Actinidia24302 Actinidia chinensis
Ah.08g212800 Amaranthus hybridus
Ah.13g066590 Amaranthus hybridus
AL6G49910 Arabidopsis lyrata
Aqoxy2G03169 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GS8BAY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IJ9A14 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L02NVW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQT8RJ Arachis hypogaea
AT4G03020 Arabidopsis thaliana
ATR0487G001 Amborella trichopoda
Atru.chr4.2718 Acer truncatum
Atru.chr5.1311 Acer truncatum
AUR62018095 Chenopodium quinoa
AUR62034587 Chenopodium quinoa
AUR62036682 Chenopodium quinoa
AUR62043984 Chenopodium quinoa
BcaB01g01931 Brassica carinata
BcaB01g01989 Brassica carinata
BcaB01g02497 Brassica carinata
BcaB03g16109 Brassica carinata
BcaB05g23678 Brassica carinata
BcaC01g06713 Brassica carinata
BcaC03g16193 Brassica carinata
BolC2t09991H Brassica oleracea
BolC3t16030H Brassica oleracea
BolC9t53176H Brassica oleracea
BraA03t12247Z Brassica rapa
BraA09t35883Z Brassica rapa
C02p39760 Brassica napus
C03p37380 Brassica napus
C09p02460 Brassica napus
CANSAT25G0199 Cannabis sativa
CARHR251410 Cardamine hirsuta
Carub.0006s3403 Capsella rubella
Ca_10386_v3 Cicer arietinum L.
Ca_13454_v3 Cicer arietinum L.
Ca_30647_v3 Cicer arietinum L.
CBR_g28650 Chara braunii
CBR_g29307 Chara braunii
CBR_g45243 Chara braunii
Cc01_g19980 Coffea canephora
Cc03_g02600 Coffea canephora
CDE11G1221 Ceratophyllum demersum
Cfa006063 Carpinus fangiana
Cfa022524 Carpinus fangiana
Ciclev10004883m.g Citrus clementina
Ciclev10019830m.g Citrus clementina
CiPaw.02G088200 Carya illinoinensis
CiPaw.07G097500 Carya illinoinensis
CiPaw.08G101600 Carya illinoinensis
ClCG09G006670 Citrullus lanatus
COL.COLO4_08058 Corchorus olitorius
Cpa.g.sc447.3 Carica papaya
Cpa.g.sc731.3 Carica papaya
Cre05.g234500 Chlamydomonas reinhardtii
CsaV3_7G028430 Cucumis sativus L.
CSS0008772 Camellia sinensis var. sinensis
CSS0026757 Camellia sinensis var. sinensis
CSS0035453 Camellia sinensis var. sinensis
CSS0050262 Camellia sinensis var. sinensis
DCAR_012445 Daucus carota
DCAR_018378 Daucus carota
DCAR_027121 Daucus carota
Dinv32978 Davidia involucrata
Dinv44447 Davidia involucrata
Duzib138G0064 Durio zibethinus
Duzib151G0875 Durio zibethinus
ECA246G5035 Erigeron canadensis
ECA247G2129 Erigeron canadensis
EL10Ac7g17154 Beta vulgaris
EL10As18g24155 Beta vulgaris
EL10As18g24156 Beta vulgaris
Eucgr.B01219 Eucalyptus grandis
Eucgr.B01222 Eucalyptus grandis
Eucgr.B01223 Eucalyptus grandis
Eucgr.K03421 Eucalyptus grandis
FAN07G0959 Fragaria x ananassa
FAN15G0819 Fragaria x ananassa
FAN20G0627 Fragaria x ananassa
FAN22G0904 Fragaria x ananassa
FAN24G1325 Fragaria x ananassa
FAN27G0162 Fragaria x ananassa
FvH4_2g24350 Fragaria vesca
FvH4_4g16870 Fragaria vesca
Glyma.02G151002 Glycine max
Glyma.10G023000 Glycine max
Glyma.13G213100 Glycine max
Glyma.15G099700 Glycine max
Gohir.A08G071300 Gossypium hirsutum
Gohir.A10G104400 Gossypium hirsutum
Gohir.A12G007500 Gossypium hirsutum
Gohir.D08G079400 Gossypium hirsutum
Gohir.D10G164300 Gossypium hirsutum
Gohir.D12G006900 Gossypium hirsutum
Gorai.004G084500 Gossypium raimondii
Gorai.008G007100 Gossypium raimondii
Gorai.011G183400 Gossypium raimondii
GSVIVG01011041001 Vitis vinifera
GSVIVG01020960001 Vitis vinifera
HanXRQChr00c0537g0575611 Helianthus annuus
HanXRQChr03g0070771 Helianthus annuus
HanXRQChr09g0256871 Helianthus annuus
HanXRQChr10g0283101 Helianthus annuus
HanXRQChr15g0466521 Helianthus annuus
Haze_01030 Corylus avellana
Haze_04787 Corylus avellana
Haze_27091 Corylus avellana
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla
Hma1.2p1_1651F.1_g295750 Hydrangea macrophylla
HPP92_010630 Vanilla planifolia
HPP92_011799 Vanilla planifolia
HPP92_011800 Vanilla planifolia
Hund05365 Selenicereus undatus
Hund05387 Selenicereus undatus
Hund05388 Selenicereus undatus
Hund20624 Selenicereus undatus
Lalb_Chr02g0142981 Lupinus albus
Lalb_Chr15g0087111 Lupinus albus
Lj2A1220T49 Lonicera japonica
Lj2C1181T11 Lonicera japonica
Lj3C807G13 Lonicera japonica
Lj5g0013799 Lotus japonicus
Lj6g0020034 Lotus japonicus
Lsat_1_v5_gn_3_26160 Lactuca sativa
Lsat_1_v5_gn_9_1680 Lactuca sativa
Manes.03G189300 Manihot esculenta
Manes.05G070800 Manihot esculenta
Mapoly0022s0099 Marchantia polymorpha
MBI19_g13509_MAGBIO Magnolia biondii
MCO09G581 Micromonas commoda
MD03G1273100 Malus domestica
MD11G1294100 Malus domestica
MD13G1176000 Malus domestica
MD16G1177700 Malus domestica
Medtr1g089290 Medicago truncatula
Medtr2g020720 Medicago truncatula
MELO3C015879.2 Cucumis melo
Migut.D00245 Erythranthe guttata
Migut.G00232 Erythranthe guttata
MSTRG.21591 Avicennia marina
Nitab4.5_0000059g0350 Nicotiana tabacum
Nitab4.5_0000295g0130 Nicotiana tabacum
Nitab4.5_0003712g0020 Nicotiana tabacum
Nitab4.5_0004238g0040 Nicotiana tabacum
Nn3g21213 Nelumbo nucifera
Nn4g26096 Nelumbo nucifera
Oeu002690.1 Olea europaea
Oeu002692.1 Olea europaea
Oeu010955.1 Olea europaea
Oeu029288.4 Olea europaea
Os01g0383700 Oryza sativa ssp. japonica
Os05g0144100 Oryza sativa ssp. japonica
Peaxi162Scf00095g00130 Petunia axillaris
Peaxi162Scf00936g00314 Petunia axillaris
PGR031G3438 Punica granatum
PGSC0003DMG400006286 Solanum tuberosum
Phvul.006G159500 Phaseolus vulgaris
Phvul.007G167701 Phaseolus vulgaris
Potri.008G197200 Populus trichocarpa
Potri.010G026800 Populus trichocarpa
Potri.014G136000 Populus trichocarpa
Pp3c10_3720 Physcomitrium patens
Pp3c1_22090 Physcomitrium patens
Pp3c2_19830 Physcomitrium patens
PRCOL_00006152 Prasinoderma coloniale
Prupe.1G145000 Prunus persica
Prupe.8G249600 Prunus persica
Psat0s4007g0080 Pisum sativum
Psat0s4007g0200 Pisum sativum
Psat0s6670g0040 Pisum sativum
Psat1g186360 Pisum sativum
Psat6g169240 Pisum sativum
PSO170G3708 Papaver somniferum
PSO302G0054 Papaver somniferum
QL06p006610 Quercus lobata
QL12p023156 Quercus lobata
RcHm_v2.0_Chr4g0399031 Rosa chinensis
RcHm_v2.0_Chr4g0420461 Rosa chinensis
RcHm_v2.0_Chr5g0070511 Rosa chinensis
RcHm_v2.0_Chr6g0292221 Rosa chinensis
RcHm_v2.0_Chr6g0295231 Rosa chinensis
Rhsim02G0015300 Rhododendron simsii
Rhsim02G0015700 Rhododendron simsii
Rhsim13G0020400 Rhododendron simsii
Sabra08G0163200 Salix brachista
Sabra14G0102500 Salix brachista
SalBow2G2809 Salvia bowleyana
SalBow2G3192 Salvia bowleyana
SalBow3G1294 Salvia bowleyana
Sc19g0004770 Simmondsia chinensis
Sed0001614 Sechium edule
Sed0002847 Sechium edule
SEGI_04850 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05777 Striga asiatica
SGA_v2.0_scaffold142G35668 Striga asiatica
SGA_v2.0_scaffold57G20269 Striga asiatica
SMO340G0288 Selaginella moellendorffii
Solyc01g080690.3 Solanum lycopersicum
Solyc06g008880.3 Solanum lycopersicum
Sopen01g030810 Solanum pennellii
Sopen06g003630 Solanum pennellii
Sp6g03060 Schrenkiella parvula
TAR625G0659 Trochodendron aralioides
TAR633G1494 Trochodendron aralioides
TAR633G1613 Trochodendron aralioides
THA.LOC104801205 Tarenaya hassleriana
THA.LOC104826007 Tarenaya hassleriana
Thecc.01G287200 Theobroma cacao
Thecc.04G274100 Theobroma cacao
Thhalv10028659m.g Eutrema salsugineum
TPR.G16951 Trifolium pratense
TPR.G18034 Trifolium pratense
TPR.G18482 Trifolium pratense
TWI53G1728 Tripterygium wilfordii
TWI59G0608 Tripterygium wilfordii
unitig_749.g14054 Utricularia gibba
vmacro02531 Vaccinium macrocarpon
vmacro15282 Vaccinium macrocarpon
VMungo0540G0646 Vigna mungo
VMungo0720G2731 Vigna mungo
Zm00001eb349670 Zea mays
Zm00001eb354420 Zea mays

User provided reference genes

Program Settings