Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p08740 Brassica napus
A07p30100 Brassica napus
A07p38920 Brassica napus
A10p14400 Brassica napus
Aa31LG3G12970 Aethionema arabicum
Aa31LG4G3140 Aethionema arabicum
Actinidia21781 Actinidia chinensis
Actinidia25228 Actinidia chinensis
Actinidia39694 Actinidia chinensis
Ah.08g216520 Amaranthus hybridus
Ah.09g231240 Amaranthus hybridus
AL2G32470 Arabidopsis lyrata
AL8G32980 Arabidopsis lyrata
Aqoxy7G01134 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.M6TAZ9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XMQ57C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y3EBK0 Arachis hypogaea
AT1G72790 Arabidopsis thaliana
AT5G57070 Arabidopsis thaliana
ATR0051G030 Amborella trichopoda
Atru.chr1.3809 Acer truncatum
Atru.chr7.1649 Acer truncatum
Atru.chr7.1650 Acer truncatum
AUR62001509 Chenopodium quinoa
AUR62009861 Chenopodium quinoa
BcaB03g15016 Brassica carinata
BcaB03g15682 Brassica carinata
BcaB05g22313 Brassica carinata
BcaB08g36011 Brassica carinata
BcaC03g18570 Brassica carinata
BcaC04g20016 Brassica carinata
BcaC08g45696 Brassica carinata
BcaC08g46719 Brassica carinata
BolC2t07593H Brassica oleracea
BolC6t38574H Brassica oleracea
BolC6t39747H Brassica oleracea
BolC9t57723H Brassica oleracea
BraA02t05944Z Brassica rapa
BraA07t30647Z Brassica rapa
BraA07t31446Z Brassica rapa
BraA10t43532Z Brassica rapa
C02p14670 Brassica napus
C06p34660 Brassica napus
C06p47070 Brassica napus
C09p48760 Brassica napus
CAN.G862.19 Capsicum annuum
CANSAT56G0839 Cannabis sativa
CANSAT56G1186 Cannabis sativa
CANSAT56G1782 Cannabis sativa
CANSAT56G2784 Cannabis sativa
CANSAT56G3219 Cannabis sativa
CANSAT56G3867 Cannabis sativa
CARHR065700 Cardamine hirsuta
CARHR270830 Cardamine hirsuta
Carub.0002s1963 Capsella rubella
Carub.0008s1758 Capsella rubella
Ca_01228_v3 Cicer arietinum L.
Ca_13141_v3 Cicer arietinum L.
Ca_23353_v3 Cicer arietinum L.
Cc04_g01580 Coffea canephora
Cc06_g11810 Coffea canephora
Cfa003043 Carpinus fangiana
Cfa003552 Carpinus fangiana
Ciclev10025206m.g Citrus clementina
CiPaw.01G221600 Carya illinoinensis
CiPaw.02G137600 Carya illinoinensis
ClCG03G015340 Citrullus lanatus
ClCG09G000850 Citrullus lanatus
COL.COLO4_18154 Corchorus olitorius
COL.COLO4_30709 Corchorus olitorius
Cpa.g.sc25.89 Carica papaya
Cpa.g.sc28.113 Carica papaya
CsaV3_7G034620 Cucumis sativus L.
CSS0017595 Camellia sinensis var. sinensis
CSS0025029 Camellia sinensis var. sinensis
DCAR_010501 Daucus carota
DCAR_026400 Daucus carota
Dinv04085 Davidia involucrata
Dinv30367 Davidia involucrata
Dinv36799 Davidia involucrata
Dinv42353 Davidia involucrata
Duzib150G1106 Durio zibethinus
Duzib168G1660 Durio zibethinus
Duzib235G1000 Durio zibethinus
ECA234G1793 Erigeron canadensis
EL10Ac7g16382 Beta vulgaris
Eucgr.C01191 Eucalyptus grandis
Eucgr.F03168 Eucalyptus grandis
FAN05G1863 Fragaria x ananassa
FAN09G3175 Fragaria x ananassa
FAN19G1307 Fragaria x ananassa
FAN23G3008 Fragaria x ananassa
FAN26G0763 Fragaria x ananassa
FAN26G3271 Fragaria x ananassa
FAN28G0926 Fragaria x ananassa
FvH4_1g08080 Fragaria vesca
FvH4_6g34220 Fragaria vesca
Glyma.07G035200 Glycine max
Glyma.09G067000 Glycine max
Glyma.13G347200 Glycine max
Glyma.15G026900 Glycine max
Glyma.15G172900 Glycine max
Glyma.16G004550 Glycine max
Gohir.A05G032200 Gossypium hirsutum
Gohir.A05G406600 Gossypium hirsutum
Gohir.A08G245700 Gossypium hirsutum
Gohir.A10G057200 Gossypium hirsutum
Gohir.D04G009000 Gossypium hirsutum
Gohir.D05G033600 Gossypium hirsutum
Gohir.D08G266700 Gossypium hirsutum
Gorai.004G284500 Gossypium raimondii
Gorai.009G034000 Gossypium raimondii
Gorai.011G063000 Gossypium raimondii
Gorai.012G010800 Gossypium raimondii
GSVIVG01016820001 Vitis vinifera
HanXRQChr09g0276641 Helianthus annuus
HanXRQChr10g0312311 Helianthus annuus
HanXRQChr10g0319551 Helianthus annuus
HanXRQChr12g0353971 Helianthus annuus
Haze_11182 Corylus avellana
Haze_16002 Corylus avellana
Haze_25953 Corylus avellana
Hma1.2p1_0291F.1_g115380 Hydrangea macrophylla
HPP92_009729 Vanilla planifolia
Lalb_Chr11g0074441 Lupinus albus
Lalb_Chr14g0372651 Lupinus albus
Lalb_Chr22g0351971 Lupinus albus
Lj3g0001848 Lotus japonicus
Lj3g0002362 Lotus japonicus
Lj5C40T31 Lonicera japonica
Lj6g0008206 Lotus japonicus
Lj7A681T61 Lonicera japonica
Lsat_1_v5_gn_4_94980 Lactuca sativa
Lsat_1_v5_gn_5_135640 Lactuca sativa
Lsat_1_v5_gn_5_141561 Lactuca sativa
Lsat_1_v5_gn_8_86220 Lactuca sativa
Manes.03G037400 Manihot esculenta
Manes.04G142400 Manihot esculenta
Manes.11G022900 Manihot esculenta
Manes.16G098800 Manihot esculenta
MBI11_g07526_MAGBIO Magnolia biondii
MD02G1085400 Malus domestica
MD09G1187300 Malus domestica
MD15G1212500 Malus domestica
MD17G1172100 Malus domestica
Medtr2g040580 Medicago truncatula
Medtr2g099520 Medicago truncatula
Medtr8g018800 Medicago truncatula
MELO3C015498.2 Cucumis melo
MELO3C024371.2 Cucumis melo
Migut.I01054 Erythranthe guttata
Migut.J00559 Erythranthe guttata
MSTRG.19484 Avicennia marina
MSTRG.22561 Avicennia marina
Nitab4.5_0000024g0020 Nicotiana tabacum
Nitab4.5_0002079g0050 Nicotiana tabacum
Nitab4.5_0002842g0010 Nicotiana tabacum
Nitab4.5_0009623g0010 Nicotiana tabacum
Nitab4.5_0009641g0030 Nicotiana tabacum
Nitab4.5_0009954g0010 Nicotiana tabacum
Nn1g01651 Nelumbo nucifera
Nn6g35558 Nelumbo nucifera
Nn8g38758 Nelumbo nucifera
Oeu000424.1 Olea europaea
Oeu010824.1 Olea europaea
Oeu010825.1 Olea europaea
Oeu033213.1 Olea europaea
Peaxi162Scf00038g00176 Petunia axillaris
Peaxi162Scf00353g00001 Petunia axillaris
PGR119G1307 Punica granatum
PGR142G1322 Punica granatum
PGSC0003DMG400002572 Solanum tuberosum
PGSC0003DMG400016079 Solanum tuberosum
PGSC0003DMG400027652 Solanum tuberosum
Phvul.005G156400 Phaseolus vulgaris
Phvul.009G229500 Phaseolus vulgaris
Phvul.010G134400 Phaseolus vulgaris
Potri.001G198900 Populus trichocarpa
Potri.006G145900 Populus trichocarpa
Prupe.3G044600 Prunus persica
Prupe.7G204200 Prunus persica
Psat1g133200 Pisum sativum
Psat4g184520 Pisum sativum
Psat5g291120 Pisum sativum
PSO063G7146 Papaver somniferum
PSO832G1389 Papaver somniferum
QL02p061749 Quercus lobata
QL05p009393 Quercus lobata
QL05p009417 Quercus lobata
RcHm_v2.0_Chr2g0094141 Rosa chinensis
RcHm_v2.0_Chr2g0144551 Rosa chinensis
Rhsim05G0013900 Rhododendron simsii
Rhsim08G0236500 Rhododendron simsii
Sabra01G0154900 Salix brachista
Sabra01G0156000 Salix brachista
Sabra06G0115500 Salix brachista
SalBow6G1014 Salvia bowleyana
SalBow6G1492 Salvia bowleyana
Sc08g0008690 Simmondsia chinensis
Sc12g0010430 Simmondsia chinensis
Sed0003823 Sechium edule
Sed0004132 Sechium edule
Sed0016575 Sechium edule
SGA_v2.0_scaffold122G33351 Striga asiatica
SGA_v2.0_scaffold97G29155 Striga asiatica
Solyc03g121890.1 Solanum lycopersicum
Solyc07g041070.3 Solanum lycopersicum
Sopen03g040710 Solanum pennellii
Sopen07g020330 Solanum pennellii
Sp5g27840 Schrenkiella parvula
Sp6g18790 Schrenkiella parvula
TAR413G0002 Trochodendron aralioides
THA.LOC104811758 Tarenaya hassleriana
THA.LOC104813497 Tarenaya hassleriana
Thecc.06G116400 Theobroma cacao
Thecc.09G082700 Theobroma cacao
Thhalv10013114m.g Eutrema salsugineum
Thhalv10019633m.g Eutrema salsugineum
TPR.G18092 Trifolium pratense
TPR.G6547 Trifolium pratense
TPR.G9778 Trifolium pratense
TWI34G1727 Tripterygium wilfordii
TWI63G1002 Tripterygium wilfordii
TWI79G0795 Tripterygium wilfordii
unitig_88.g27588 Utricularia gibba
unitig_88.g27589 Utricularia gibba
vmacro22222 Vaccinium macrocarpon
VMungo0331G1268 Vigna mungo
VMungo1080G1287 Vigna mungo
VMungo1309G0156 Vigna mungo

User provided reference genes

Program Settings