Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p05520 Brassica napus
A10p27500 Brassica napus
Aa31LG3G17140 Aethionema arabicum
Aa31sc1107G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.294 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1660 Anthoceros agrestis
Actinidia12207 Actinidia chinensis
Actinidia28891 Actinidia chinensis
Actinidia29397 Actinidia chinensis
Actinidia33360 Actinidia chinensis
AL1G18960 Arabidopsis lyrata
AL6G20440 Arabidopsis lyrata
Aqoxy2G04007 Aquilegia oxysepala
Aqoxy6G00491 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5U8RR1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJC05B Arachis hypogaea
AT1G08530 Arabidopsis thaliana
AT5G09995 Arabidopsis thaliana
ATR0561G058 Amborella trichopoda
ATR0564G092 Amborella trichopoda
Atru.chr2.1245 Acer truncatum
Atru.chr4.388 Acer truncatum
AUR62000658 Chenopodium quinoa
AUR62003311 Chenopodium quinoa
AUR62016272 Chenopodium quinoa
BcaB07g34096 Brassica carinata
BcaC04g19357 Brassica carinata
BolC5t29423H Brassica oleracea
BolC9t59518H Brassica oleracea
BraA06t23760Z Brassica rapa
BraA10t44802Z Brassica rapa
C05p06630 Brassica napus
C09p67570 Brassica napus
CANSAT01G0680 Cannabis sativa
CANSAT01G2986 Cannabis sativa
CARHR008430 Cardamine hirsuta
CARHR203320 Cardamine hirsuta
Carub.0001s0789 Capsella rubella
Carub.0006s0845 Capsella rubella
Ca_16890_v3 Cicer arietinum L.
Ca_18953_v3 Cicer arietinum L.
CBR_g41090 Chara braunii
Cc00_g15120 Coffea canephora
Cc07_g14910 Coffea canephora
Cc07_g16080 Coffea canephora
Cc09_g03220 Coffea canephora
CDE05G1582 Ceratophyllum demersum
CDE05G2567 Ceratophyllum demersum
Cfa002747 Carpinus fangiana
Cfa021165 Carpinus fangiana
Ciclev10021599m.g Citrus clementina
Ciclev10027170m.g Citrus clementina
CiPaw.03G134800 Carya illinoinensis
CiPaw.09G139200 Carya illinoinensis
ClCG01G016170 Citrullus lanatus
ClCG07G000990 Citrullus lanatus
COL.COLO4_11018 Corchorus olitorius
Cpa.g.sc196.5 Carica papaya
Cpa.g.sc51.69 Carica papaya
CsaV3_3G022500 Cucumis sativus L.
CsaV3_6G042440 Cucumis sativus L.
CSS0027841 Camellia sinensis var. sinensis
CSS0042568 Camellia sinensis var. sinensis
DCAR_011447 Daucus carota
Dinv03229 Davidia involucrata
Dinv19496 Davidia involucrata
Dinv42701 Davidia involucrata
Duzib128G2066 Durio zibethinus
Duzib147G1014 Durio zibethinus
Duzib177G0745 Durio zibethinus
Duzib187G0667 Durio zibethinus
Duzib187G1676 Durio zibethinus
ECA232G3626 Erigeron canadensis
ECA233G1668 Erigeron canadensis
EL10Ac4g09801 Beta vulgaris
EL10Ac6g14747 Beta vulgaris
Eucgr.H04156 Eucalyptus grandis
Eucgr.H04542 Eucalyptus grandis
Eucgr.I00329 Eucalyptus grandis
Eucgr.L02757 Eucalyptus grandis
FAN15G1600 Fragaria x ananassa
FAN19G1893 Fragaria x ananassa
FAN23G1765 Fragaria x ananassa
FAN24G2383 Fragaria x ananassa
FAN26G2803 Fragaria x ananassa
FAN27G0312 Fragaria x ananassa
FAN28G0264 Fragaria x ananassa
FvH4_1g22170 Fragaria vesca
FvH4_2g21680 Fragaria vesca
Glyma.04G219900 Glycine max
Glyma.06G146000 Glycine max
Glyma.11G108700 Glycine max
Gohir.A02G134700 Gossypium hirsutum
Gohir.A08G218300 Gossypium hirsutum
Gohir.A09G143700 Gossypium hirsutum
Gohir.A11G241100 Gossypium hirsutum
Gohir.D03G045600 Gossypium hirsutum
Gohir.D08G235500 Gossypium hirsutum
Gohir.D11G250500 Gossypium hirsutum
Gorai.003G046700 Gossypium raimondii
Gorai.004G250100 Gossypium raimondii
Gorai.007G268600 Gossypium raimondii
GSVIVG01022218001 Vitis vinifera
GSVIVG01026377001 Vitis vinifera
GSVIVG01034718001 Vitis vinifera
HanXRQChr05g0139071 Helianthus annuus
HanXRQChr09g0254781 Helianthus annuus
Haze_05203 Corylus avellana
Haze_05221 Corylus avellana
Haze_05223 Corylus avellana
Haze_05227 Corylus avellana
Haze_05231 Corylus avellana
Haze_25034 Corylus avellana
Hma1.2p1_0375F.1_g138650 Hydrangea macrophylla
HPP92_016463 Vanilla planifolia
HPP92_021426 Vanilla planifolia
HPP92_027146 Vanilla planifolia
Hund03545 Selenicereus undatus
Hund07151 Selenicereus undatus
Lalb_Chr03g0024371 Lupinus albus
Lalb_Chr08g0238901 Lupinus albus
Lj1g0020979 Lotus japonicus
Lj2C51T6 Lonicera japonica
Lj3g0016982 Lotus japonicus
Lsat_1_v5_gn_4_141101 Lactuca sativa
Lsat_1_v5_gn_5_104460 Lactuca sativa
Lsat_1_v5_gn_8_3301 Lactuca sativa
Manes.09G144700 Manihot esculenta
Manes.12G141900 Manihot esculenta
Mapoly0067s0012 Marchantia polymorpha
Mapoly0132s0020 Marchantia polymorpha
MBI05_g36589_MAGBIO Magnolia biondii
MCO11G744 Micromonas commoda
MD01G1018800 Malus domestica
MD05G1199200 Malus domestica
MD10G1185200 Malus domestica
MD15G1333500 Malus domestica
Medtr3g094780 Medicago truncatula
Medtr4g078130 Medicago truncatula
MELO3C007487.2 Cucumis melo
MELO3C012902.2 Cucumis melo
Migut.F02068 Erythranthe guttata
Migut.H02426 Erythranthe guttata
MSTRG.27426 Avicennia marina
MSTRG.9226 Avicennia marina
Nitab4.5_0000344g0060 Nicotiana tabacum
Nitab4.5_0000818g0060 Nicotiana tabacum
Nitab4.5_0003944g0060 Nicotiana tabacum
Nitab4.5_0004246g0050 Nicotiana tabacum
Nn1g07964 Nelumbo nucifera
Nn5g28921 Nelumbo nucifera
Oeu007687.2 Olea europaea
Oeu028528.1 Olea europaea
Os06g0225400 Oryza sativa ssp. japonica
Os12g0430900 Oryza sativa ssp. japonica
Peaxi162Scf00167g00017 Petunia axillaris
Peaxi162Scf00215g00114 Petunia axillaris
PGR004G1910 Punica granatum
PGR004G2214 Punica granatum
PGSC0003DMG400030098 Solanum tuberosum
PGSC0003DMG401023121 Solanum tuberosum
PGSC0003DMG402023121 Solanum tuberosum
Phvul.009G140000 Phaseolus vulgaris
Phvul.011G018900 Phaseolus vulgaris
Potri.007G081800 Populus trichocarpa
Potri.013G052700 Populus trichocarpa
Potri.019G030400 Populus trichocarpa
Pp3c18_21490 Physcomitrium patens
Pp3c19_6090 Physcomitrium patens
Pp3c21_1120 Physcomitrium patens
PRCOL_00005505 Prasinoderma coloniale
Prupe.1G354200 Prunus persica
Prupe.6G174000 Prunus persica
Prupe.8G225000 Prunus persica
Psat5g065560 Pisum sativum
Psat7g170080 Pisum sativum
PSO017G4550 Papaver somniferum
PSO063G0038 Papaver somniferum
PSO210G0972 Papaver somniferum
PSO447G0304 Papaver somniferum
QL02p017328 Quercus lobata
QL05p081668 Quercus lobata
QL06p031359 Quercus lobata
RcHm_v2.0_Chr2g0116241 Rosa chinensis
RcHm_v2.0_Chr6g0288361 Rosa chinensis
Rhsim02G0173800 Rhododendron simsii
Rhsim10G0151200 Rhododendron simsii
Sabra07G0068600 Salix brachista
Sabra19G0037200 Salix brachista
Sabra19G0039700 Salix brachista
SalBow1G2572 Salvia bowleyana
SalBow6G3070 Salvia bowleyana
Sc09g0001740 Simmondsia chinensis
Sc16g0004180 Simmondsia chinensis
Sed0003588 Sechium edule
Sed0012175 Sechium edule
SEGI_02150 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01298 Striga asiatica
SGA_v2.0_scaffold62G21477 Striga asiatica
SMO228G0152 Selaginella moellendorffii
Solyc04g051120.4 Solanum lycopersicum
Solyc05g051770.3 Solanum lycopersicum
Sopen04g022430 Solanum pennellii
Sopen05g030240 Solanum pennellii
Sp1g07190 Schrenkiella parvula
Sp6g33410 Schrenkiella parvula
TAR381G0007 Trochodendron aralioides
TAR633G0234 Trochodendron aralioides
TAR633G0952 Trochodendron aralioides
TAR633G1434 Trochodendron aralioides
THA.LOC104799229 Tarenaya hassleriana
THA.LOC104818479 Tarenaya hassleriana
THA.LOC104821131 Tarenaya hassleriana
Thecc.01G112000 Theobroma cacao
Thecc.05G260600 Theobroma cacao
Thhalv10008466m.g Eutrema salsugineum
Thhalv10014442m.g Eutrema salsugineum
TPR.G127 Trifolium pratense
TPR.G18568 Trifolium pratense
TPR.G19622 Trifolium pratense
TPR.G23722 Trifolium pratense
TWI34G0844 Tripterygium wilfordii
TWI53G0340 Tripterygium wilfordii
TWI74G0568 Tripterygium wilfordii
unitig_736.g22503 Utricularia gibba
unitig_899.g14601 Utricularia gibba
vmacro11037 Vaccinium macrocarpon
vmacro12907 Vaccinium macrocarpon
VMungo1127G1567 Vigna mungo
VMungo1309G0566 Vigna mungo

User provided reference genes

Program Settings