Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p16660 Brassica napus
A03p55940 Brassica napus
A09p27060 Brassica napus
Aa31LG9G10420 Aethionema arabicum
Aa31sc16G60 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.98 Anthoceros agrestis
Actinidia05247 Actinidia chinensis
Actinidia13552 Actinidia chinensis
Ah.12g058090 Amaranthus hybridus
AL6G46890 Arabidopsis lyrata
AL7G27760 Arabidopsis lyrata
Aqoxy7G00601 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1JF53G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5Y868I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9Q6FU5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GV0M2E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HKN7YH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KQG6X4 Arachis hypogaea
AT4G12060 Arabidopsis thaliana
AT4G25370 Arabidopsis thaliana
ATR0733G005 Amborella trichopoda
Atru.chr1.630 Acer truncatum
Atru.chr9.1465_Atru.chr9.1466 Acer truncatum
AUR62010525 Chenopodium quinoa
AUR62016099 Chenopodium quinoa
AUR62017370 Chenopodium quinoa
AUR62035047 Chenopodium quinoa
AUR62043457 Chenopodium quinoa
BcaB01g01716 Brassica carinata
BcaC04g21200 Brassica carinata
BcaC06g32816 Brassica carinata
BcaC08g43391 Brassica carinata
BcaC09g50784 Brassica carinata
BolC1t02015H Brassica oleracea
BolC6t35846H Brassica oleracea
BolC7t45911H Brassica oleracea
BolC9t56282H Brassica oleracea
BraA01t01620Z Brassica rapa
BraA03t14666Z Brassica rapa
BraA09t38277Z Brassica rapa
C01p20880 Brassica napus
C06p07580 Brassica napus
C07p54250 Brassica napus
C09p34390 Brassica napus
CAN.G630.51 Capsicum annuum
CAN.G916.1 Capsicum annuum
CANSAT21G0916 Cannabis sativa
CARHR232780 Cardamine hirsuta
CARHR254170 Cardamine hirsuta
Carub.0006s3118 Capsella rubella
Carub.0007s1564 Capsella rubella
Ca_06685_v3 Cicer arietinum L.
Ca_26391_v3 Cicer arietinum L.
Ca_26392_v3 Cicer arietinum L.
CBR_g51930 Chara braunii
Cc02_g03870 Coffea canephora
Cc08_g13440 Coffea canephora
CDE04G0245 Ceratophyllum demersum
CDE12G0368 Ceratophyllum demersum
CDE12G0690 Ceratophyllum demersum
Cfa008232 Carpinus fangiana
Cfa012036 Carpinus fangiana
Ciclev10005783m.g Citrus clementina
Ciclev10021970m.g Citrus clementina
CiPaw.04G063400 Carya illinoinensis
CiPaw.11G145800 Carya illinoinensis
ClCG03G013130 Citrullus lanatus
ClCG05G007500 Citrullus lanatus
COL.COLO4_14183 Corchorus olitorius
COL.COLO4_23846 Corchorus olitorius
Cpa.g.sc3.268 Carica papaya
CsaV3_3G016360 Cucumis sativus L.
CSS0011191 Camellia sinensis var. sinensis
CSS0032928 Camellia sinensis var. sinensis
DCAR_008445 Daucus carota
Dinv22933 Davidia involucrata
Dinv38969 Davidia involucrata
Duzib068G0384 Durio zibethinus
Duzib205G2025 Durio zibethinus
ECA238G1944 Erigeron canadensis
EL10Ac3g05790 Beta vulgaris
EL10Ac5g12642 Beta vulgaris
Eucgr.A02874 Eucalyptus grandis
Eucgr.E00488 Eucalyptus grandis
FAN01G1434 Fragaria x ananassa
FAN03G1389 Fragaria x ananassa
FAN04G1254 Fragaria x ananassa
FAN04G3155 Fragaria x ananassa
FAN06G2513 Fragaria x ananassa
FAN08G0011 Fragaria x ananassa
FAN10G2472 Fragaria x ananassa
FAN13G3294 Fragaria x ananassa
FAN14G2219 Fragaria x ananassa
FAN14G3024 Fragaria x ananassa
FAN18G0561 Fragaria x ananassa
FAN24G0790 Fragaria x ananassa
FvH4_5g00880 Fragaria vesca
FvH4_7g00050 Fragaria vesca
Glyma.01G212900 Glycine max
Glyma.09G153200 Glycine max
Glyma.09G153300 Glycine max
Glyma.16G204000 Glycine max
Glyma.16G204100 Glycine max
Gohir.A03G011200 Gossypium hirsutum
Gohir.A09G043900 Gossypium hirsutum
Gohir.D03G158700 Gossypium hirsutum
Gohir.D09G045200 Gossypium hirsutum
Gorai.003G167300 Gossypium raimondii
Gorai.006G065200 Gossypium raimondii
GSVIVG01018510001 Vitis vinifera
HanXRQChr06g0164901 Helianthus annuus
HanXRQChr07g0191101 Helianthus annuus
HanXRQChr07g0206291 Helianthus annuus
HanXRQChr14g0461771 Helianthus annuus
Haze_09040 Corylus avellana
Haze_13824 Corylus avellana
Hma1.2p1_0654F.1_g196380 Hydrangea macrophylla
HPP92_014952 Vanilla planifolia
HPP92_014977 Vanilla planifolia
HPP92_020665 Vanilla planifolia
Hund04644 Selenicereus undatus
Hund14668 Selenicereus undatus
Hund29193 Selenicereus undatus
Hund29194 Selenicereus undatus
Hund29836 Selenicereus undatus
Lalb_Chr03g0033091 Lupinus albus
Lalb_Chr16g0379831 Lupinus albus
Lj1A984T85 Lonicera japonica
Lj2A205T63 Lonicera japonica
Lj2g0006653 Lotus japonicus
Lj2g0006969 Lotus japonicus
Lsat_1_v5_gn_2_129680 Lactuca sativa
Lsat_1_v5_gn_3_3161 Lactuca sativa
Manes.02G032400 Manihot esculenta
Manes.06G138200 Manihot esculenta
Mapoly0045s0148 Marchantia polymorpha
MBI04_g32238_MAGBIO Magnolia biondii
MBI11_g22737_MAGBIO Magnolia biondii
MBI11_g46742_MAGBIO Magnolia biondii
MD00G1055600 Malus domestica
MD02G1320000 Malus domestica
MD06G1067100 Malus domestica
MD17G1137600 Malus domestica
Medtr5g011550 Medicago truncatula
Medtr6g461650 Medicago truncatula
MELO3C006835.2 Cucumis melo
Migut.E00995 Erythranthe guttata
Migut.E01138 Erythranthe guttata
Migut.E01140 Erythranthe guttata
Migut.F00426 Erythranthe guttata
MSTRG.1927 Avicennia marina
MSTRG.8799 Avicennia marina
Nitab4.5_0000072g0370 Nicotiana tabacum
Nitab4.5_0000439g0070 Nicotiana tabacum
Nitab4.5_0009404g0020 Nicotiana tabacum
Nitab4.5_0014178g0010 Nicotiana tabacum
Nn1g01209 Nelumbo nucifera
Nn4g26419 Nelumbo nucifera
Nn4g26420 Nelumbo nucifera
Oeu022513.1 Olea europaea
Oeu025549.2 Olea europaea
Oeu042587.1 Olea europaea
Os03g0247000 Oryza sativa ssp. japonica
Peaxi162Scf00192g01014 Petunia axillaris
Peaxi162Scf00271g00047 Petunia axillaris
PGR042G1339 Punica granatum
PGR042G1934 Punica granatum
PGSC0003DMG400003923 Solanum tuberosum
Phvul.002G151400 Phaseolus vulgaris
Phvul.004G127000 Phaseolus vulgaris
Potri.001G115500 Populus trichocarpa
Potri.012G129800 Populus trichocarpa
Potri.015G131700 Populus trichocarpa
Pp3c18_19140 Physcomitrium patens
Pp3c22_8800 Physcomitrium patens
Prupe.2G002100 Prunus persica
Prupe.5G082000 Prunus persica
Psat1g111360 Pisum sativum
Psat2g180000 Pisum sativum
PSO478G4197 Papaver somniferum
PSO782G3254 Papaver somniferum
QL11p028279 Quercus lobata
QL12p015432 Quercus lobata
QL12p015437 Quercus lobata
QL12p039501 Quercus lobata
QL12p039564 Quercus lobata
RcHm_v2.0_Chr1g0313031 Rosa chinensis
RcHm_v2.0_Chr1g0313191 Rosa chinensis
RcHm_v2.0_Chr7g0200491 Rosa chinensis
RcHm_v2.0_Chr7g0200901 Rosa chinensis
Rhsim03G0171900 Rhododendron simsii
Rhsim07G0100500 Rhododendron simsii
Sabra01G0088600 Salix brachista
Sabra12G0097700 Salix brachista
Sabra15G0144700 Salix brachista
SalBow4G2264 Salvia bowleyana
SalBow4G3211 Salvia bowleyana
Sc01g0009100 Simmondsia chinensis
Sed0006203 Sechium edule
Sed0020988 Sechium edule
SEGI_04148 Sequoiadendron giganteum
SEGI_37758 Sequoiadendron giganteum
SGA_v2.0_scaffold486G52380 Striga asiatica
SMO358G0179 Selaginella moellendorffii
Solyc03g007110.3 Solanum lycopersicum
Solyc08g079660.3 Solanum lycopersicum
Sopen03g003100 Solanum pennellii
Sopen08g028020 Solanum pennellii
Sp6g05440 Schrenkiella parvula
Sp7g23390 Schrenkiella parvula
TAR375G1145 Trochodendron aralioides
TAR629G2083 Trochodendron aralioides
TAR636G0670 Trochodendron aralioides
THA.LOC104798714 Tarenaya hassleriana
THA.LOC104806351 Tarenaya hassleriana
Thecc.03G161800 Theobroma cacao
Thecc.03G263700 Theobroma cacao
Thhalv10026111m.g Eutrema salsugineum
Thhalv10028912m.g Eutrema salsugineum
TPR.G10676 Trifolium pratense
TPR.G19562 Trifolium pratense
TWI14G0828 Tripterygium wilfordii
TWI15G1185 Tripterygium wilfordii
vmacro06765 Vaccinium macrocarpon
vmacro11979 Vaccinium macrocarpon
vmacro14033 Vaccinium macrocarpon
VMungo0464G1742 Vigna mungo
VMungo1215G1559 Vigna mungo
Zm00001eb010590 Zea mays
Zm00001eb398660 Zea mays

User provided reference genes

Program Settings