Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p00100 Brassica napus
Aa31LG10G17170 Aethionema arabicum
Aa31LG10G17180 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2433 Anthoceros agrestis
Actinidia19960 Actinidia chinensis
Actinidia21825 Actinidia chinensis
Actinidia24940 Actinidia chinensis
Ah.11g050240 Amaranthus hybridus
AL1G52600 Arabidopsis lyrata
AL5G46180 Arabidopsis lyrata
AL5G46190 Arabidopsis lyrata
Aqoxy7G03495 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea
AT3G63320 Arabidopsis thaliana
AT3G63340 Arabidopsis thaliana
ATR0665G490 Amborella trichopoda
Atru.chr5.1516 Acer truncatum
Atru.chr5.1517 Acer truncatum
AUR62011976 Chenopodium quinoa
AUR62025055 Chenopodium quinoa
AUR62032285 Chenopodium quinoa
AUR62032286 Chenopodium quinoa
BcaB02g08065 Brassica carinata
BolC4t24522H Brassica oleracea
BraA04t15730Z Brassica rapa
C04p29910 Brassica napus
CAN.G337.25 Capsicum annuum
CAN.G337.27 Capsicum annuum
CAN.G380.7 Capsicum annuum
CAN.G771.8 Capsicum annuum
CAN.G771.9 Capsicum annuum
CANSAT25G2944 Cannabis sativa
CARHR291630 Cardamine hirsuta
Carub.0005s2998 Capsella rubella
Ca_09731_v3 Cicer arietinum L.
CBR_g2972 Chara braunii
Cc01_g19030 Coffea canephora
Cc01_g19040 Coffea canephora
CDE05G0153 Ceratophyllum demersum
Cfa006195 Carpinus fangiana
Cfa006196 Carpinus fangiana
Ciclev10018605m.g Citrus clementina
Ciclev10023714m.g Citrus clementina
CiPaw.07G087100 Carya illinoinensis
CiPaw.08G108900 Carya illinoinensis
ClCG07G000490 Citrullus lanatus
COL.COLO4_09194 Corchorus olitorius
Cpa.g.sc52.114 Carica papaya
Cpa.g.sc52.115 Carica papaya
Cre01.g008150 Chlamydomonas reinhardtii
CsaV3_2G013890 Cucumis sativus L.
CSS0006820 Camellia sinensis var. sinensis
CSS0009751 Camellia sinensis var. sinensis
CSS0014533 Camellia sinensis var. sinensis
CSS0023156 Camellia sinensis var. sinensis
CSS0028390 Camellia sinensis var. sinensis
CSS0030988 Camellia sinensis var. sinensis
CSS0036045 Camellia sinensis var. sinensis
CSS0037111 Camellia sinensis var. sinensis
CSS0037436 Camellia sinensis var. sinensis
CSS0037859 Camellia sinensis var. sinensis
CSS0041745 Camellia sinensis var. sinensis
CSS0049118 Camellia sinensis var. sinensis
DCAR_012504 Daucus carota
DCAR_012505 Daucus carota
DCAR_012506 Daucus carota
Dinv32887 Davidia involucrata
Duzib114G0118 Durio zibethinus
Duzib211G0299 Durio zibethinus
ECA247G3236 Erigeron canadensis
EL10Ac5g10495 Beta vulgaris
EL10Ac5g10497 Beta vulgaris
Eucgr.K03327 Eucalyptus grandis
FAN15G0470 Fragaria x ananassa
FAN20G1777 Fragaria x ananassa
FAN24G2837 Fragaria x ananassa
FAN27G2040 Fragaria x ananassa
FvH4_2g23010 Fragaria vesca
Glyma.02G144500 Glycine max
Gohir.A08G045205 Gossypium hirsutum
Gohir.D08G055500 Gossypium hirsutum
Gorai.004G056100 Gossypium raimondii
GSVIVG01003115001 Vitis vinifera
GSVIVG01003117001 Vitis vinifera
HanXRQChr09g0240611 Helianthus annuus
HanXRQChr09g0240651 Helianthus annuus
HanXRQChr09g0240681 Helianthus annuus
HanXRQChr09g0240711 Helianthus annuus
HanXRQChr10g0281961 Helianthus annuus
HanXRQChr11g0338821 Helianthus annuus
Haze_04646 Corylus avellana
Haze_04647 Corylus avellana
Haze_04649 Corylus avellana
HPP92_020348 Vanilla planifolia
HPP92_020349 Vanilla planifolia
Hund02862 Selenicereus undatus
Hund02863 Selenicereus undatus
Lalb_Chr21g0306351 Lupinus albus
Lj2C1165G7 Lonicera japonica
Lj2C1165T16 Lonicera japonica
Lj5g0006345 Lotus japonicus
Lsat_1_v5_gn_5_185781 Lactuca sativa
Lsat_1_v5_gn_9_7440 Lactuca sativa
Lsat_1_v5_gn_9_7521 Lactuca sativa
Manes.01G204300 Manihot esculenta
Manes.05G081600 Manihot esculenta
Mapoly0019s0132 Marchantia polymorpha
MBI11_g09455_MAGBIO Magnolia biondii
MD00G1147300 Malus domestica
MD00G1147600 Malus domestica
MD00G1147700 Malus domestica
MD00G1147800 Malus domestica
MD03G1258500 Malus domestica
MD08G1204000 Malus domestica
MD08G1204800 Malus domestica
Medtr1g071370 Medicago truncatula
MELO3C014325.2 Cucumis melo
Migut.D00359 Erythranthe guttata
Migut.D00361 Erythranthe guttata
MSTRG.18266 Avicennia marina
MSTRG.21529 Avicennia marina
Nitab4.5_0000172g2190 Nicotiana tabacum
Nitab4.5_0000459g0030 Nicotiana tabacum
Nitab4.5_0001044g0020 Nicotiana tabacum
Nitab4.5_0002266g0120 Nicotiana tabacum
Nitab4.5_0002380g0050 Nicotiana tabacum
Nitab4.5_0003775g0010 Nicotiana tabacum
Nitab4.5_0003775g0030 Nicotiana tabacum
Nitab4.5_0004086g0050 Nicotiana tabacum
Nitab4.5_0007786g0010 Nicotiana tabacum
Nitab4.5_0013316g0010 Nicotiana tabacum
Nn1g00098 Nelumbo nucifera
Nn1g02454 Nelumbo nucifera
Oeu025764.3 Olea europaea
Oeu036121.1 Olea europaea
Oeu047219.2 Olea europaea
Oeu052360.1 Olea europaea
Os01g0728400 Oryza sativa ssp. japonica
Os11g0586100 Oryza sativa ssp. japonica
Peaxi162Scf00230g00019 Petunia axillaris
Peaxi162Scf00288g01310 Petunia axillaris
Peaxi162Scf00608g00921 Petunia axillaris
Peaxi162Scf00732g00115 Petunia axillaris
Peaxi162Scf00732g00137 Petunia axillaris
PGR019G0005 Punica granatum
PGR044G1058 Punica granatum
PGR044G2467 Punica granatum
PGSC0003DMG400022196 Solanum tuberosum
PGSC0003DMG400030387 Solanum tuberosum
PGSC0003DMG401019311 Solanum tuberosum
PGSC0003DMG402020059 Solanum tuberosum
Phvul.007G174700 Phaseolus vulgaris
Potri.005G214500 Populus trichocarpa
Potri.005G214650 Populus trichocarpa
Pp3c16_17820 Physcomitrium patens
PRCOL_00004918 Prasinoderma coloniale
Prupe.8G235000 Prunus persica
Psat0s4150g0200 Pisum sativum
Psat3g126520 Pisum sativum
Psat6g059080 Pisum sativum
Psat7g210040 Pisum sativum
PSO832G1612 Papaver somniferum
QL05p067089 Quercus lobata
QL05p073569 Quercus lobata
QL05p073579 Quercus lobata
QL05p073824 Quercus lobata
QL05p073831 Quercus lobata
QL05p073939 Quercus lobata
QL11p027988 Quercus lobata
QL12p042043 Quercus lobata
QL12p042048 Quercus lobata
QL12p042063 Quercus lobata
RcHm_v2.0_Chr3g0479641 Rosa chinensis
RcHm_v2.0_Chr6g0290051 Rosa chinensis
Rhsim01G0068300 Rhododendron simsii
Rhsim01G0068400 Rhododendron simsii
Rhsim01G0272200 Rhododendron simsii
Rhsim10G0181700 Rhododendron simsii
Rhsim13G0028600 Rhododendron simsii
Rhsim13G0147400 Rhododendron simsii
Rhsim13G0147500 Rhododendron simsii
Sabra05G0163900 Salix brachista
Sabra05G0164000 Salix brachista
SalBow4G0275 Salvia bowleyana
SalBow4G0873 Salvia bowleyana
Sc17g0001190 Simmondsia chinensis
Sc17g0001200 Simmondsia chinensis
Sed0003144 Sechium edule
SEGI_21440 Sequoiadendron giganteum
SEGI_39175 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00529 Striga asiatica
SGA_v2.0_scaffold1G00532 Striga asiatica
SMO238G0016 Selaginella moellendorffii
SMO356G0077 Selaginella moellendorffii
Solyc06g082690.1 Solanum lycopersicum
Solyc06g082700.1 Solanum lycopersicum
Solyc06g084110.1 Solanum lycopersicum
Solyc09g065650.3 Solanum lycopersicum
Sopen06g035490 Solanum pennellii
Sopen09g027400 Solanum pennellii
Sp5g00200 Schrenkiella parvula
Sp5g00210 Schrenkiella parvula
TAR362G0937 Trochodendron aralioides
TAR365G0266 Trochodendron aralioides
TAR365G0943 Trochodendron aralioides
THA.LOC104809895 Tarenaya hassleriana
THA.LOC104813803 Tarenaya hassleriana
Thecc.01G272000 Theobroma cacao
Thhalv10005760m.g Eutrema salsugineum
TPR.G16975 Trifolium pratense
TPR.G25694 Trifolium pratense
TPR.G25700 Trifolium pratense
TWI12G0259 Tripterygium wilfordii
TWI60G0894 Tripterygium wilfordii
TWI60G1134 Tripterygium wilfordii
TWI60G1634 Tripterygium wilfordii
unitig_0.g137 Utricularia gibba
unitig_0.g139 Utricularia gibba
unitig_0.g140 Utricularia gibba
vmacro02611 Vaccinium macrocarpon
vmacro02612 Vaccinium macrocarpon
vmacro14890 Vaccinium macrocarpon
vmacro19549 Vaccinium macrocarpon
VMungo0720G0840 Vigna mungo
Zm00001eb114480 Zea mays
Zm00001eb114500 Zea mays
Zm00001eb114510 Zea mays
Zm00001eb114650 Zea mays
Zm00001eb114680 Zea mays

User provided reference genes

Program Settings