Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p07760 Brassica napus
A06p46180 Brassica napus
Aa31LG11G13230 Aethionema arabicum
Aa31LG9G6870 Aethionema arabicum
Actinidia05655 Actinidia chinensis
Actinidia25367 Actinidia chinensis
Ah.05g169180 Amaranthus hybridus
Ah.09g237590 Amaranthus hybridus
AL6G27360 Arabidopsis lyrata
AL8G12410 Arabidopsis lyrata
Aqoxy1G00388 Aquilegia oxysepala
Aqoxy3G02934 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A8R8TX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IL2A8L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IYAJ8R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N9VQ32 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T6B6L0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z51W7G Arachis hypogaea
AT5G16420 Arabidopsis thaliana
AT5G46100 Arabidopsis thaliana
ATR0003G004 Amborella trichopoda
ATR0564G055 Amborella trichopoda
ATR0589G124 Amborella trichopoda
ATR0929G003 Amborella trichopoda
ATR0929G004 Amborella trichopoda
ATR1096G023 Amborella trichopoda
Atru.chr10.1787 Acer truncatum
Atru.chr5.721 Acer truncatum
Atru.chr5.725 Acer truncatum
AUR62014868 Chenopodium quinoa
AUR62024804 Chenopodium quinoa
AUR62031074 Chenopodium quinoa
AUR62032416 Chenopodium quinoa
BcaC03g16829 Brassica carinata
BolC2t10753H Brassica oleracea
BolC3t13394H Brassica oleracea
BolC7t43470H Brassica oleracea
BraA03t10103Z Brassica rapa
BraA06t27482Z Brassica rapa
C02p47050 Brassica napus
C03p08980 Brassica napus
C07p29280 Brassica napus
CAN.G1415.6 Capsicum annuum
CAN.G529.58 Capsicum annuum
CANSAT35G1083 Cannabis sativa
CARHR175750 Cardamine hirsuta
CARHR196830 Cardamine hirsuta
Carub.0006s1462 Capsella rubella
Carub.0008s0183 Capsella rubella
Ca_00364_v3 Cicer arietinum L.
Ca_26027_v3 Cicer arietinum L.
Cc02_g13870 Coffea canephora
Cc05_g05060 Coffea canephora
CDE07G1865 Ceratophyllum demersum
CDE09G0204 Ceratophyllum demersum
Cfa000530 Carpinus fangiana
Cfa003765 Carpinus fangiana
Ciclev10015063m.g Citrus clementina
Ciclev10024306m.g Citrus clementina
CiPaw.01G079100 Carya illinoinensis
CiPaw.10G052700 Carya illinoinensis
ClCG03G008000 Citrullus lanatus
ClCG05G013300 Citrullus lanatus
COL.COLO4_31418 Corchorus olitorius
Cpa.g.c29128.3 Carica papaya
Cpa.g.sc8167.1 Carica papaya
CsaV3_1G012580 Cucumis sativus L.
CsaV3_3G027230 Cucumis sativus L.
CSS0003779 Camellia sinensis var. sinensis
CSS0011148 Camellia sinensis var. sinensis
CSS0037924 Camellia sinensis var. sinensis
CSS0040504 Camellia sinensis var. sinensis
CSS0042999 Camellia sinensis var. sinensis
DCAR_006392 Daucus carota
DCAR_007997 Daucus carota
DCAR_020537 Daucus carota
DCAR_022794 Daucus carota
DCAR_027196 Daucus carota
Dinv17357 Davidia involucrata
Dinv32619 Davidia involucrata
Dinv40602 Davidia involucrata
Duzib138G0512 Durio zibethinus
Duzib235G0042 Durio zibethinus
ECA234G3389 Erigeron canadensis
ECA236G0037 Erigeron canadensis
ECA236G1421 Erigeron canadensis
EL10Ac1g01397 Beta vulgaris
EL10Ac8g20438 Beta vulgaris
Eucgr.E00027 Eucalyptus grandis
Eucgr.E03142 Eucalyptus grandis
Eucgr.E03144 Eucalyptus grandis
Eucgr.E03336 Eucalyptus grandis
Eucgr.E03338 Eucalyptus grandis
Eucgr.E03340 Eucalyptus grandis
Eucgr.E03343 Eucalyptus grandis
FAN07G2492 Fragaria x ananassa
FAN11G0723 Fragaria x ananassa
FAN12G1172 Fragaria x ananassa
FAN16G0081 Fragaria x ananassa
FAN17G1471 Fragaria x ananassa
FAN22G0034 Fragaria x ananassa
FAN25G0667 Fragaria x ananassa
FvH4_3g08550 Fragaria vesca
FvH4_4g07830 Fragaria vesca
FvH4_7g08341 Fragaria vesca
Glyma.07G131700 Glycine max
Glyma.13G235200 Glycine max
Gohir.A05G158800 Gossypium hirsutum
Gohir.A07G135800 Gossypium hirsutum
Gohir.D05G161466 Gossypium hirsutum
Gohir.D05G161532 Gossypium hirsutum
Gohir.D07G140800 Gossypium hirsutum
Gorai.001G152700 Gossypium raimondii
Gorai.009G166600 Gossypium raimondii
GSVIVG01011280001 Vitis vinifera
GSVIVG01031218001 Vitis vinifera
GSVIVG01032691001 Vitis vinifera
HanXRQChr04g0120331 Helianthus annuus
HanXRQChr04g0120401 Helianthus annuus
HanXRQChr11g0346401 Helianthus annuus
Haze_06370 Corylus avellana
Haze_15702 Corylus avellana
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla
HPP92_004444 Vanilla planifolia
HPP92_009975 Vanilla planifolia
Lalb_Chr18g0059371 Lupinus albus
Lalb_Chr19g0125351 Lupinus albus
Lj1g0024766 Lotus japonicus
Lj1P1201T59 Lonicera japonica
Lj4g0020646 Lotus japonicus
Lj6g0015281 Lotus japonicus
Lj7A250T23 Lonicera japonica
Lj7A254T21 Lonicera japonica
Lj7C254T5 Lonicera japonica
Lj7C453T5 Lonicera japonica
Lsat_1_v5_gn_4_51801 Lactuca sativa
Lsat_1_v5_gn_7_4680 Lactuca sativa
Manes.05G019600 Manihot esculenta
Manes.17G049500 Manihot esculenta
MBI04_g06923_MAGBIO Magnolia biondii
MBI04_g11919_MAGBIO Magnolia biondii
MBI11_g00911_MAGBIO Magnolia biondii
MD02G1232100 Malus domestica
MD07G1081300 Malus domestica
MD10G1288900 Malus domestica
Medtr2g014510 Medicago truncatula
Medtr6g055803 Medicago truncatula
Medtr7g060720 Medicago truncatula
MELO3C014863.2 Cucumis melo
MELO3C035724.2 Cucumis melo
Migut.L00552 Erythranthe guttata
Migut.M01106 Erythranthe guttata
Migut.N01566 Erythranthe guttata
MSTRG.28276 Avicennia marina
MSTRG.7361 Avicennia marina
Nitab4.5_0000307g0100 Nicotiana tabacum
Nitab4.5_0001955g0120 Nicotiana tabacum
Nitab4.5_0017998g0010 Nicotiana tabacum
Nn1g06408 Nelumbo nucifera
Nn1g06487 Nelumbo nucifera
Oeu004987.4 Olea europaea
Oeu056521.1 Olea europaea
Os01g0672166 Oryza sativa ssp. japonica
Os06g0125300 Oryza sativa ssp. japonica
Peaxi162Scf00099g00032 Petunia axillaris
PGR083G0469 Punica granatum
PGR083G2565 Punica granatum
PGSC0003DMG400000242 Solanum tuberosum
PGSC0003DMG401031751 Solanum tuberosum
Phvul.008G101200 Phaseolus vulgaris
Phvul.010G102600 Phaseolus vulgaris
Potri.011G057900 Populus trichocarpa
Potri.012G031600 Populus trichocarpa
Prupe.2G106500 Prunus persica
Prupe.4G052800 Prunus persica
Prupe.6G346200 Prunus persica
Psat1g202920 Pisum sativum
Psat3g140560 Pisum sativum
PSO210G3062 Papaver somniferum
PSO832G1556 Papaver somniferum
QL05p042043 Quercus lobata
QL07p003708 Quercus lobata
QL08p046166 Quercus lobata
RcHm_v2.0_Chr1g0340441 Rosa chinensis
RcHm_v2.0_Chr1g0340541 Rosa chinensis
RcHm_v2.0_Chr1g0340661 Rosa chinensis
RcHm_v2.0_Chr1g0340691 Rosa chinensis
RcHm_v2.0_Chr5g0009291 Rosa chinensis
Rhsim07G0001900 Rhododendron simsii
Rhsim13G0180300 Rhododendron simsii
Sabra11G0040100 Salix brachista
Sabra12G0021100 Salix brachista
SalBow4G2308 Salvia bowleyana
Sc09g0006490 Simmondsia chinensis
Sc17g0005920 Simmondsia chinensis
Sed0000822 Sechium edule
Sed0020837 Sechium edule
SEGI_13320 Sequoiadendron giganteum
SEGI_18794 Sequoiadendron giganteum
SEGI_27242 Sequoiadendron giganteum
SGA_v2.0_scaffold22G09659 Striga asiatica
SGA_v2.0_scaffold43G16408 Striga asiatica
SGA_v2.0_scaffold581G53045 Striga asiatica
SHI00257 Sapria himalayana
SHI13050 Sapria himalayana
Solyc01g096210.4 Solanum lycopersicum
Solyc02g077650.2 Solanum lycopersicum
Sopen01g039970 Solanum pennellii
Sopen02g022550 Solanum pennellii
Sopen06g004450 Solanum pennellii
Sp2g10960 Schrenkiella parvula
Sp6g27760 Schrenkiella parvula
TAR624G0606 Trochodendron aralioides
TAR624G1385 Trochodendron aralioides
TAR626G0685 Trochodendron aralioides
TAR636G3678 Trochodendron aralioides
THA.LOC104798403 Tarenaya hassleriana
THA.LOC104798785 Tarenaya hassleriana
Thecc.01G337500 Theobroma cacao
Thecc.06G180800 Theobroma cacao
Thhalv10000872m.g Eutrema salsugineum
Thhalv10013226m.g Eutrema salsugineum
TPR.G11746 Trifolium pratense
TPR.G25962 Trifolium pratense
TWI59G0009 Tripterygium wilfordii
TWI63G1258 Tripterygium wilfordii
vmacro03903 Vaccinium macrocarpon
VMungo0331G1630 Vigna mungo
VMungo1309G1441 Vigna mungo
Zm00001eb269290 Zea mays
Zm00001eb359970 Zea mays

User provided reference genes

Program Settings