Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p25980 Brassica napus
A05p00460 Brassica napus
Aa31LG1G28770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.808 Anthoceros agrestis
Actinidia16850 Actinidia chinensis
Ah.06g188900 Amaranthus hybridus
AL4G47030 Arabidopsis lyrata
Aqoxy2G02233 Aquilegia oxysepala
Aqoxy2G02802 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6077R1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B5R1P0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JXQN87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KJ6PEZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LY6DXQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PTRY8R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QGM0MN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S88MSF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z077FQ Arachis hypogaea
AT2G47470 Arabidopsis thaliana
ATR0706G068 Amborella trichopoda
Atru.chr5.1047 Acer truncatum
AUR62000684 Chenopodium quinoa
AUR62005272 Chenopodium quinoa
BcaB01g03165 Brassica carinata
BcaB02g08769 Brassica carinata
BcaC01g05028 Brassica carinata
BolC3t15449H Brassica oleracea
BolC4t21686H Brassica oleracea
BolC4t25518H Brassica oleracea
BraA03t11815Z Brassica rapa
BraA05t19044Z Brassica rapa
C03p30980 Brassica napus
C04p00410 Brassica napus
C04p39530 Brassica napus
CAN.G1273.1 Capsicum annuum
CANSAT54G0071 Cannabis sativa
CARHR142860 Cardamine hirsuta
Carub.0004s3019 Capsella rubella
Ca_04979_v3 Cicer arietinum L.
Ca_09297_v3 Cicer arietinum L.
Ca_10298_v3 Cicer arietinum L.
Ca_19755_v3 Cicer arietinum L.
CBR_g16054 Chara braunii
CBR_g35008 Chara braunii
CBR_g41277 Chara braunii
CBR_g41286 Chara braunii
CBR_g48210 Chara braunii
CBR_g57127 Chara braunii
Cc00_g18950 Coffea canephora
Cc00_g19780 Coffea canephora
Cc02_g34820 Coffea canephora
Cc09_g08100 Coffea canephora
CDE02G3360 Ceratophyllum demersum
CDE09G1190 Ceratophyllum demersum
Cfa023759 Carpinus fangiana
Ciclev10020618m.g Citrus clementina
CiPaw.07G115400 Carya illinoinensis
CiPaw.08G156600 Carya illinoinensis
ClCG09G005250 Citrullus lanatus
COL.COLO4_23259 Corchorus olitorius
Cpa.g.sc18.9 Carica papaya
Cre01.g033550 Chlamydomonas reinhardtii
Cre02.g098800 Chlamydomonas reinhardtii
Cre16.g692751 Chlamydomonas reinhardtii
CsaV3_7G029820 Cucumis sativus L.
CSS0025736 Camellia sinensis var. sinensis
CSS0028783 Camellia sinensis var. sinensis
DCAR_005415 Daucus carota
DCAR_025272 Daucus carota
DCAR_029360 Daucus carota
Dinv24424 Davidia involucrata
Dinv30871 Davidia involucrata
Duzib133G0744 Durio zibethinus
Duzib138G0226 Durio zibethinus
Duzib211G0560 Durio zibethinus
ECA234G0860 Erigeron canadensis
ECA234G2827 Erigeron canadensis
ECA236G5052 Erigeron canadensis
EL10Ac4g09830 Beta vulgaris
Eucgr.K03531 Eucalyptus grandis
FAN02G4218 Fragaria x ananassa
FAN05G2722 Fragaria x ananassa
FAN09G2340 Fragaria x ananassa
FAN14G0083 Fragaria x ananassa
FvH4_6g07230 Fragaria vesca
Glyma.01G103400 Glycine max
Glyma.02G014000 Glycine max
Glyma.03G232000 Glycine max
Glyma.10G014700 Glycine max
Glyma.14G140200 Glycine max
Glyma.19G229000 Glycine max
Gohir.A07G127500 Gossypium hirsutum
Gohir.A08G118600 Gossypium hirsutum
Gohir.A12G126400 Gossypium hirsutum
Gohir.D07G131800 Gossypium hirsutum
Gohir.D08G139400 Gossypium hirsutum
Gohir.D11G116000 Gossypium hirsutum
Gohir.D12G129900 Gossypium hirsutum
Gorai.001G143100 Gossypium raimondii
Gorai.004G143300 Gossypium raimondii
Gorai.007G124200 Gossypium raimondii
Gorai.008G141100 Gossypium raimondii
GSVIVG01031219001 Vitis vinifera
HanXRQChr10g0299231 Helianthus annuus
Haze_04080 Corylus avellana
Haze_05013 Corylus avellana
Haze_26400 Corylus avellana
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla
Hma1.2p1_0472F.1_g159880 Hydrangea macrophylla
HPP92_015959 Vanilla planifolia
HPP92_015969 Vanilla planifolia
HPP92_015970 Vanilla planifolia
HPP92_016960 Vanilla planifolia
Hund07135 Selenicereus undatus
Hund21746 Selenicereus undatus
Lalb_Chr02g0146691 Lupinus albus
Lalb_Chr06g0166661 Lupinus albus
Lalb_Chr06g0166671 Lupinus albus
Lalb_Chr06g0166781 Lupinus albus
Lalb_Chr21g0309481 Lupinus albus
Lj1g0022270 Lotus japonicus
Lj5A337G17 Lonicera japonica
Lj5g0008352 Lotus japonicus
Lj9C217G8 Lonicera japonica
Lsat_1_v5_gn_5_102801 Lactuca sativa
Lsat_1_v5_gn_7_73501 Lactuca sativa
Lsat_1_v5_gn_9_98021 Lactuca sativa
Manes.05G002000 Manihot esculenta
Manes.09G175600 Manihot esculenta
Mapoly0016s0144 Marchantia polymorpha
Mapoly0095s0015 Marchantia polymorpha
MCO01G582 Micromonas commoda
MCO03G057 Micromonas commoda
MCO09G324 Micromonas commoda
MCO16G478 Micromonas commoda
MD04G1195300 Malus domestica
MD05G1165900 Malus domestica
MD12G1207400 Malus domestica
Medtr1g087520 Medicago truncatula
Medtr7g112040 Medicago truncatula
MELO3C015939.2 Cucumis melo
Migut.N02114 Erythranthe guttata
MSTRG.27951 Avicennia marina
MSTRG.5139 Avicennia marina
Nitab4.5_0000368g0270 Nicotiana tabacum
Nitab4.5_0009033g0020 Nicotiana tabacum
Nn3g21634 Nelumbo nucifera
Nn4g25650 Nelumbo nucifera
Oeu013220.1 Olea europaea
Oeu053701.1 Olea europaea
Oeu064809.1 Olea europaea
Os01g0339900 Oryza sativa ssp. japonica
Os05g0156300 Oryza sativa ssp. japonica
Peaxi162Scf00071g00438 Petunia axillaris
Peaxi162Scf00673g00127 Petunia axillaris
PGR044G1530 Punica granatum
PGSC0003DMG400002779 Solanum tuberosum
Phvul.001G225600 Phaseolus vulgaris
Phvul.007G215900 Phaseolus vulgaris
Potri.002G198300 Populus trichocarpa
Potri.014G122800 Populus trichocarpa
Pp3c4_19910 Physcomitrium patens
PRCOL_00003089 Prasinoderma coloniale
PRCOL_00003838 Prasinoderma coloniale
PRCOL_00003948 Prasinoderma coloniale
PRCOL_00005748 Prasinoderma coloniale
PRCOL_00005944 Prasinoderma coloniale
Prupe.6G315000 Prunus persica
Psat3g013080 Pisum sativum
Psat6g163280 Pisum sativum
PSO210G1046 Papaver somniferum
PSO761G0326 Papaver somniferum
PSO761G0499 Papaver somniferum
QL03p018289 Quercus lobata
QL12p028974 Quercus lobata
RcHm_v2.0_Chr1g0321291 Rosa chinensis
RcHm_v2.0_Chr3g0456861 Rosa chinensis
RcHm_v2.0_Chr6g0255891 Rosa chinensis
Rhsim05G0133600 Rhododendron simsii
Rhsim11G0094000 Rhododendron simsii
Sabra02G0159300 Salix brachista
Sabra14G0091200 Salix brachista
SalBow3G0105 Salvia bowleyana
SalBow7G4351 Salvia bowleyana
Sc09g0002680 Simmondsia chinensis
Sc16g0008930 Simmondsia chinensis
Sed0000157 Sechium edule
Sed0023511 Sechium edule
SEGI_09774 Sequoiadendron giganteum
SEGI_15151 Sequoiadendron giganteum
SGA_v2.0_scaffold80G25880 Striga asiatica
SGA_v2.0_scaffold81G26125 Striga asiatica
SHI12762 Sapria himalayana
SMO201G0065 Selaginella moellendorffii
SMO270G0056 Selaginella moellendorffii
SMO306G0009 Selaginella moellendorffii
Solyc01g100320.3 Solanum lycopersicum
Sopen01g043830 Solanum pennellii
Sp4g29410 Schrenkiella parvula
TAR362G0641 Trochodendron aralioides
TAR365G0113 Trochodendron aralioides
TAR633G1423 Trochodendron aralioides
THA.LOC104802194 Tarenaya hassleriana
THA.LOC104817468 Tarenaya hassleriana
Thecc.01G310600 Theobroma cacao
Thhalv10001515m.g Eutrema salsugineum
TPR.G1663 Trifolium pratense
TPR.G19768 Trifolium pratense
TWI18G0728 Tripterygium wilfordii
TWI56G0814 Tripterygium wilfordii
TWI75G0141 Tripterygium wilfordii
unitig_21.g20026 Utricularia gibba
unitig_26.g10138 Utricularia gibba
vmacro01554 Vaccinium macrocarpon
vmacro19723 Vaccinium macrocarpon
VMungo0251G1886 Vigna mungo
VMungo0331G1919 Vigna mungo
VMungo0540G1080 Vigna mungo
VMungo0647G1826 Vigna mungo
VMungo0720G0399 Vigna mungo
VMungo1127G0034 Vigna mungo
VMungo1383G0101 Vigna mungo
VMungo1383G1934 Vigna mungo
VMungo1383G3526 Vigna mungo
Zm00001eb131360 Zea mays
Zm00001eb235580 Zea mays
Zm00001eb282710 Zea mays
Zm00001eb418520 Zea mays
Zm00001eb418550 Zea mays

User provided reference genes

Program Settings